Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4992 and Pf1N1B4_4993 are separated by 140 nucleotides Pf1N1B4_4993 and Pf1N1B4_4994 are separated by 168 nucleotides
Pf1N1B4_4992 - Dienelactone hydrolase and related enzymes, at 5,538,604 to 5,539,563
_4992
Pf1N1B4_4993 - Arabinose efflux permease, at 5,539,704 to 5,540,849
_4993
Pf1N1B4_4994 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 5,541,018 to 5,542,349
_4994
Position (kb) 5539
5540
5541 Strain fitness (log2 ratio) -2
-1
0
1 at 5538.797 kb on - strand, within Pf1N1B4_4992 at 5538.901 kb on + strand, within Pf1N1B4_4992 at 5539.033 kb on - strand at 5539.061 kb on - strand, within Pf1N1B4_4992 at 5539.061 kb on - strand, within Pf1N1B4_4992 at 5539.061 kb on - strand at 5539.061 kb on - strand at 5539.238 kb on - strand at 5539.343 kb on - strand, within Pf1N1B4_4992 at 5539.343 kb on - strand, within Pf1N1B4_4992 at 5539.436 kb on - strand, within Pf1N1B4_4992 at 5539.436 kb on - strand, within Pf1N1B4_4992 at 5539.633 kb on - strand at 5539.636 kb on - strand at 5539.679 kb on + strand at 5539.679 kb on + strand at 5539.781 kb on - strand at 5539.914 kb on - strand, within Pf1N1B4_4993 at 5539.953 kb on + strand, within Pf1N1B4_4993 at 5539.954 kb on - strand, within Pf1N1B4_4993 at 5539.996 kb on + strand, within Pf1N1B4_4993 at 5540.198 kb on - strand, within Pf1N1B4_4993 at 5540.343 kb on + strand, within Pf1N1B4_4993 at 5540.950 kb on + strand at 5541.208 kb on - strand, within Pf1N1B4_4994 at 5541.208 kb on - strand, within Pf1N1B4_4994 at 5541.208 kb on - strand, within Pf1N1B4_4994 at 5541.283 kb on - strand, within Pf1N1B4_4994 at 5541.288 kb on + strand, within Pf1N1B4_4994 at 5541.289 kb on - strand, within Pf1N1B4_4994 at 5541.593 kb on + strand, within Pf1N1B4_4994 at 5541.596 kb on + strand, within Pf1N1B4_4994 at 5541.596 kb on + strand, within Pf1N1B4_4994 at 5541.597 kb on - strand, within Pf1N1B4_4994 at 5541.612 kb on - strand, within Pf1N1B4_4994 at 5541.729 kb on + strand, within Pf1N1B4_4994 at 5541.811 kb on - strand at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand at 5541.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 5,538,797 - Pf1N1B4_4992 0.20 -0.1 5,538,901 + Pf1N1B4_4992 0.31 +0.2 5,539,033 - +1.3 5,539,061 - Pf1N1B4_4992 0.48 +1.6 5,539,061 - Pf1N1B4_4992 0.48 -2.1 5,539,061 - +0.0 5,539,061 - +1.3 5,539,238 - -0.8 5,539,343 - Pf1N1B4_4992 0.77 +0.6 5,539,343 - Pf1N1B4_4992 0.77 +0.3 5,539,436 - Pf1N1B4_4992 0.87 +0.9 5,539,436 - Pf1N1B4_4992 0.87 -0.4 5,539,633 - -0.2 5,539,636 - -0.5 5,539,679 + +0.3 5,539,679 + -0.6 5,539,781 - -0.5 5,539,914 - Pf1N1B4_4993 0.18 -0.8 5,539,953 + Pf1N1B4_4993 0.22 -1.2 5,539,954 - Pf1N1B4_4993 0.22 -0.0 5,539,996 + Pf1N1B4_4993 0.25 -2.1 5,540,198 - Pf1N1B4_4993 0.43 -0.5 5,540,343 + Pf1N1B4_4993 0.56 -1.3 5,540,950 + -0.5 5,541,208 - Pf1N1B4_4994 0.14 -0.6 5,541,208 - Pf1N1B4_4994 0.14 -1.2 5,541,208 - Pf1N1B4_4994 0.14 -0.2 5,541,283 - Pf1N1B4_4994 0.20 +0.2 5,541,288 + Pf1N1B4_4994 0.20 +0.4 5,541,289 - Pf1N1B4_4994 0.20 -1.6 5,541,593 + Pf1N1B4_4994 0.43 -0.6 5,541,596 + Pf1N1B4_4994 0.43 -1.1 5,541,596 + Pf1N1B4_4994 0.43 -1.6 5,541,597 - Pf1N1B4_4994 0.43 -2.2 5,541,612 - Pf1N1B4_4994 0.45 +0.2 5,541,729 + Pf1N1B4_4994 0.53 -0.2 5,541,811 - -0.8 5,541,818 + Pf1N1B4_4994 0.60 -0.6 5,541,818 + Pf1N1B4_4994 0.60 -0.8 5,541,818 + Pf1N1B4_4994 0.60 -2.4 5,541,818 + Pf1N1B4_4994 0.60 +0.4 5,541,818 + Pf1N1B4_4994 0.60 +0.0 5,541,818 + Pf1N1B4_4994 0.60 +0.8 5,541,818 + Pf1N1B4_4994 0.60 -2.2 5,541,818 + Pf1N1B4_4994 0.60 -0.8 5,541,818 + Pf1N1B4_4994 0.60 +0.1 5,541,819 - Pf1N1B4_4994 0.60 -0.8 5,541,819 - Pf1N1B4_4994 0.60 +0.9 5,541,819 - Pf1N1B4_4994 0.60 -0.5 5,541,819 - Pf1N1B4_4994 0.60 -0.6 5,541,819 - -0.6 5,541,819 - +0.8
Or see this region's nucleotide sequence