Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_488 and Pf1N1B4_489 are separated by 91 nucleotides Pf1N1B4_489 and Pf1N1B4_490 are separated by 466 nucleotides
Pf1N1B4_488 - Cyn operon transcriptional activator, at 580,025 to 580,972
_488
Pf1N1B4_489 - hypothetical protein possibly connected to lactam utilization and allophanate hydrolase, at 581,064 to 581,867
_489
Pf1N1B4_490 - hypothetical protein, at 582,334 to 582,507
_490
Position (kb) 581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 580.118 kb on - strand at 580.224 kb on - strand, within Pf1N1B4_488 at 580.509 kb on - strand, within Pf1N1B4_488 at 580.544 kb on + strand, within Pf1N1B4_488 at 580.545 kb on - strand, within Pf1N1B4_488 at 580.545 kb on - strand, within Pf1N1B4_488 at 580.545 kb on - strand, within Pf1N1B4_488 at 580.545 kb on - strand, within Pf1N1B4_488 at 580.545 kb on - strand, within Pf1N1B4_488 at 580.556 kb on + strand, within Pf1N1B4_488 at 580.629 kb on + strand, within Pf1N1B4_488 at 580.629 kb on + strand, within Pf1N1B4_488 at 580.629 kb on + strand, within Pf1N1B4_488 at 580.630 kb on - strand, within Pf1N1B4_488 at 580.630 kb on - strand, within Pf1N1B4_488 at 580.630 kb on - strand, within Pf1N1B4_488 at 580.970 kb on + strand at 580.971 kb on - strand at 580.971 kb on - strand at 580.978 kb on - strand at 580.978 kb on - strand at 580.978 kb on - strand at 580.978 kb on - strand at 581.145 kb on + strand, within Pf1N1B4_489 at 581.146 kb on - strand, within Pf1N1B4_489 at 581.355 kb on + strand, within Pf1N1B4_489 at 581.518 kb on - strand, within Pf1N1B4_489 at 581.518 kb on - strand, within Pf1N1B4_489 at 581.518 kb on - strand, within Pf1N1B4_489 at 581.520 kb on - strand, within Pf1N1B4_489 at 581.530 kb on + strand, within Pf1N1B4_489 at 581.530 kb on + strand at 581.530 kb on + strand, within Pf1N1B4_489 at 581.530 kb on + strand, within Pf1N1B4_489 at 581.531 kb on - strand at 581.531 kb on - strand, within Pf1N1B4_489 at 581.531 kb on - strand, within Pf1N1B4_489 at 581.531 kb on - strand, within Pf1N1B4_489 at 581.531 kb on - strand at 581.531 kb on - strand, within Pf1N1B4_489 at 581.785 kb on + strand, within Pf1N1B4_489 at 581.786 kb on - strand, within Pf1N1B4_489 at 581.894 kb on - strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.980 kb on + strand at 581.981 kb on - strand at 581.981 kb on - strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 582.072 kb on + strand at 582.073 kb on - strand at 582.120 kb on - strand at 582.120 kb on - strand at 582.158 kb on - strand at 582.158 kb on - strand at 582.159 kb on + strand at 582.159 kb on + strand at 582.160 kb on - strand at 582.160 kb on - strand at 582.160 kb on - strand at 582.160 kb on - strand at 582.271 kb on + strand at 582.271 kb on + strand at 582.272 kb on - strand at 582.319 kb on - strand at 582.319 kb on - strand at 582.440 kb on + strand, within Pf1N1B4_490 at 582.440 kb on + strand, within Pf1N1B4_490 at 582.440 kb on + strand, within Pf1N1B4_490 at 582.441 kb on - strand, within Pf1N1B4_490 at 582.441 kb on - strand, within Pf1N1B4_490 at 582.466 kb on + strand, within Pf1N1B4_490 at 582.466 kb on + strand, within Pf1N1B4_490 at 582.480 kb on + strand, within Pf1N1B4_490 at 582.480 kb on + strand, within Pf1N1B4_490 at 582.505 kb on + strand at 582.505 kb on + strand at 582.505 kb on + strand at 582.506 kb on - strand at 582.506 kb on - strand at 582.506 kb on - strand at 582.511 kb on + strand at 582.512 kb on - strand at 582.512 kb on - strand at 582.525 kb on + strand at 582.525 kb on + strand at 582.537 kb on + strand at 582.537 kb on + strand at 582.537 kb on + strand at 582.537 kb on + strand at 582.538 kb on - strand at 582.538 kb on - strand at 582.538 kb on - strand at 582.564 kb on + strand at 582.565 kb on - strand at 582.588 kb on + strand at 582.588 kb on + strand at 582.640 kb on + strand at 582.640 kb on + strand at 582.641 kb on - strand at 582.641 kb on - strand at 582.641 kb on - strand at 582.691 kb on - strand at 582.811 kb on + strand at 582.812 kb on - strand at 582.812 kb on - strand at 582.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 580,118 - +0.2 580,224 - Pf1N1B4_488 0.21 +0.2 580,509 - Pf1N1B4_488 0.51 -0.8 580,544 + Pf1N1B4_488 0.55 +1.7 580,545 - Pf1N1B4_488 0.55 +1.2 580,545 - Pf1N1B4_488 0.55 +0.2 580,545 - Pf1N1B4_488 0.55 -0.9 580,545 - Pf1N1B4_488 0.55 -1.8 580,545 - Pf1N1B4_488 0.55 +0.5 580,556 + Pf1N1B4_488 0.56 -0.4 580,629 + Pf1N1B4_488 0.64 -0.4 580,629 + Pf1N1B4_488 0.64 +0.6 580,629 + Pf1N1B4_488 0.64 +0.8 580,630 - Pf1N1B4_488 0.64 +0.3 580,630 - Pf1N1B4_488 0.64 -0.6 580,630 - Pf1N1B4_488 0.64 -0.4 580,970 + +0.8 580,971 - +0.7 580,971 - -1.1 580,978 - -1.4 580,978 - -1.5 580,978 - -1.1 580,978 - +0.5 581,145 + Pf1N1B4_489 0.10 -1.1 581,146 - Pf1N1B4_489 0.10 -0.4 581,355 + Pf1N1B4_489 0.36 -1.4 581,518 - Pf1N1B4_489 0.56 -0.4 581,518 - Pf1N1B4_489 0.56 -0.8 581,518 - Pf1N1B4_489 0.56 -0.8 581,520 - Pf1N1B4_489 0.57 +0.6 581,530 + Pf1N1B4_489 0.58 -0.6 581,530 + +0.2 581,530 + Pf1N1B4_489 0.58 -1.4 581,530 + Pf1N1B4_489 0.58 +0.0 581,531 - -0.8 581,531 - Pf1N1B4_489 0.58 +0.2 581,531 - Pf1N1B4_489 0.58 -0.2 581,531 - Pf1N1B4_489 0.58 -0.5 581,531 - +0.2 581,531 - Pf1N1B4_489 0.58 -0.6 581,785 + Pf1N1B4_489 0.90 -0.9 581,786 - Pf1N1B4_489 0.90 -1.2 581,894 - -1.6 581,966 + +1.0 581,966 + +0.4 581,980 + +2.2 581,981 - -1.9 581,981 - +0.2 581,984 + +1.2 581,984 + -1.6 581,984 + -0.4 581,984 + +0.0 581,984 + +0.6 581,985 - +1.6 581,985 - -2.4 581,985 - -0.8 581,985 - -1.4 581,985 - -0.4 581,985 - -1.9 581,985 - -0.2 582,072 + -0.6 582,073 - +0.0 582,120 - +1.0 582,120 - +0.2 582,158 - +1.2 582,158 - +0.5 582,159 + +0.4 582,159 + -1.1 582,160 - +0.1 582,160 - -1.0 582,160 - +1.1 582,160 - +0.6 582,271 + +0.1 582,271 + +0.6 582,272 - +0.6 582,319 - +0.9 582,319 - +1.2 582,440 + Pf1N1B4_490 0.61 -1.4 582,440 + Pf1N1B4_490 0.61 +1.8 582,440 + Pf1N1B4_490 0.61 -0.8 582,441 - Pf1N1B4_490 0.61 -1.6 582,441 - Pf1N1B4_490 0.61 +0.1 582,466 + Pf1N1B4_490 0.76 -0.8 582,466 + Pf1N1B4_490 0.76 -0.6 582,480 + Pf1N1B4_490 0.84 +0.4 582,480 + Pf1N1B4_490 0.84 -0.6 582,505 + -1.4 582,505 + +0.5 582,505 + +0.5 582,506 - -0.1 582,506 - -0.9 582,506 - -1.6 582,511 + +1.2 582,512 - +1.4 582,512 - -1.0 582,525 + +0.2 582,525 + -0.5 582,537 + +0.8 582,537 + -0.9 582,537 + -1.7 582,537 + -0.9 582,538 - -0.8 582,538 - -0.5 582,538 - +0.2 582,564 + -1.6 582,565 - -0.8 582,588 + +0.7 582,588 + +0.4 582,640 + +0.1 582,640 + -0.6 582,641 - -0.1 582,641 - +0.3 582,641 - -0.4 582,691 - -1.1 582,811 + -2.4 582,812 - +0.6 582,812 - -0.4 582,835 + -0.9
Or see this region's nucleotide sequence