Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4421 and Pf1N1B4_4422 are separated by 252 nucleotides Pf1N1B4_4422 and Pf1N1B4_4423 are separated by 64 nucleotides Pf1N1B4_4423 and Pf1N1B4_4424 overlap by 4 nucleotides
Pf1N1B4_4421 - LysR family transcriptional regulator lrhA, at 4,881,475 to 4,882,335
_4421
Pf1N1B4_4422 - ABC transporter amino acid-binding protein, at 4,882,588 to 4,883,430
_4422
Pf1N1B4_4423 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,883,495 to 4,884,346
_4423
Pf1N1B4_4424 - D-2-hydroxyglutarate dehydrogenase, at 4,884,343 to 4,885,767
_4424
Position (kb) 4882
4883
4884 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4881.698 kb on + strand, within Pf1N1B4_4421 at 4881.698 kb on + strand, within Pf1N1B4_4421 at 4882.049 kb on - strand, within Pf1N1B4_4421 at 4882.049 kb on - strand, within Pf1N1B4_4421 at 4882.304 kb on - strand at 4882.357 kb on + strand at 4882.358 kb on - strand at 4882.730 kb on + strand, within Pf1N1B4_4422 at 4882.731 kb on - strand, within Pf1N1B4_4422 at 4882.967 kb on - strand, within Pf1N1B4_4422 at 4883.066 kb on - strand, within Pf1N1B4_4422 at 4883.850 kb on - strand, within Pf1N1B4_4423 at 4884.091 kb on + strand, within Pf1N1B4_4423 at 4884.091 kb on + strand, within Pf1N1B4_4423 at 4884.091 kb on + strand, within Pf1N1B4_4423 at 4884.092 kb on - strand, within Pf1N1B4_4423 at 4884.092 kb on - strand, within Pf1N1B4_4423 at 4884.092 kb on - strand, within Pf1N1B4_4423 at 4884.092 kb on - strand, within Pf1N1B4_4423 at 4884.092 kb on - strand, within Pf1N1B4_4423
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 4,881,698 + Pf1N1B4_4421 0.26 -1.1 4,881,698 + Pf1N1B4_4421 0.26 +0.1 4,882,049 - Pf1N1B4_4421 0.67 -1.7 4,882,049 - Pf1N1B4_4421 0.67 -2.0 4,882,304 - +1.4 4,882,357 + +0.1 4,882,358 - -2.1 4,882,730 + Pf1N1B4_4422 0.17 +0.9 4,882,731 - Pf1N1B4_4422 0.17 +2.0 4,882,967 - Pf1N1B4_4422 0.45 +0.7 4,883,066 - Pf1N1B4_4422 0.57 -0.1 4,883,850 - Pf1N1B4_4423 0.42 +0.5 4,884,091 + Pf1N1B4_4423 0.70 -1.5 4,884,091 + Pf1N1B4_4423 0.70 +0.9 4,884,091 + Pf1N1B4_4423 0.70 +0.3 4,884,092 - Pf1N1B4_4423 0.70 -0.1 4,884,092 - Pf1N1B4_4423 0.70 -0.1 4,884,092 - Pf1N1B4_4423 0.70 +0.4 4,884,092 - Pf1N1B4_4423 0.70 -1.5 4,884,092 - Pf1N1B4_4423 0.70 -0.1
Or see this region's nucleotide sequence