Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4045 and Pf1N1B4_4046 are separated by 86 nucleotides Pf1N1B4_4046 and Pf1N1B4_4047 are separated by 127 nucleotides Pf1N1B4_4047 and Pf1N1B4_4048 overlap by 4 nucleotides
Pf1N1B4_4045 - FIG002776: hypothetical protein, at 4,497,082 to 4,498,251
_4045
Pf1N1B4_4046 - Adenylosuccinate lyase (EC 4.3.2.2), at 4,498,338 to 4,499,708
_4046
Pf1N1B4_4047 - FIG002903: a protein of unknown function perhaps involved in purine metabolism, at 4,499,836 to 4,500,459
_4047
Pf1N1B4_4048 - tRNA-specific 2-thiouridylase MnmA, at 4,500,456 to 4,501,589
_4048
Position (kb)
4498
4499
4500 Strain fitness (log2 ratio)
-2
-1
0
1 at 4497.839 kb on + strand, within Pf1N1B4_4045 at 4499.795 kb on - strand at 4499.795 kb on - strand at 4499.795 kb on - strand at 4499.811 kb on + strand at 4499.821 kb on + strand at 4499.868 kb on + strand at 4499.950 kb on + strand at 4499.954 kb on - strand, within Pf1N1B4_4047 at 4499.954 kb on - strand, within Pf1N1B4_4047 at 4499.954 kb on - strand, within Pf1N1B4_4047 at 4500.053 kb on + strand, within Pf1N1B4_4047 at 4500.053 kb on + strand, within Pf1N1B4_4047 at 4500.054 kb on - strand, within Pf1N1B4_4047 at 4500.054 kb on - strand, within Pf1N1B4_4047 at 4500.054 kb on - strand, within Pf1N1B4_4047 at 4500.299 kb on + strand, within Pf1N1B4_4047 at 4500.299 kb on + strand, within Pf1N1B4_4047 at 4500.299 kb on + strand, within Pf1N1B4_4047 at 4500.300 kb on - strand, within Pf1N1B4_4047 at 4500.300 kb on - strand, within Pf1N1B4_4047
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 4,497,839 + Pf1N1B4_4045 0.65 +0.8 4,499,795 - -1.0 4,499,795 - +0.7 4,499,795 - +0.8 4,499,811 + -2.0 4,499,821 + -0.0 4,499,868 + +0.2 4,499,950 + -0.2 4,499,954 - Pf1N1B4_4047 0.19 +0.4 4,499,954 - Pf1N1B4_4047 0.19 -0.2 4,499,954 - Pf1N1B4_4047 0.19 +1.0 4,500,053 + Pf1N1B4_4047 0.35 +0.8 4,500,053 + Pf1N1B4_4047 0.35 -0.3 4,500,054 - Pf1N1B4_4047 0.35 +1.6 4,500,054 - Pf1N1B4_4047 0.35 -0.2 4,500,054 - Pf1N1B4_4047 0.35 +0.0 4,500,299 + Pf1N1B4_4047 0.74 +0.4 4,500,299 + Pf1N1B4_4047 0.74 +1.7 4,500,299 + Pf1N1B4_4047 0.74 +1.0 4,500,300 - Pf1N1B4_4047 0.74 -0.5 4,500,300 - Pf1N1B4_4047 0.74 +0.5
Or see this region's nucleotide sequence