Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2682 and Pf1N1B4_2683 overlap by 1 nucleotides Pf1N1B4_2683 and Pf1N1B4_2684 are separated by 10 nucleotides Pf1N1B4_2684 and Pf1N1B4_2685 are separated by 415 nucleotides
Pf1N1B4_2682 - Antiholin-like protein LrgA, at 3,020,051 to 3,020,410
_2682
Pf1N1B4_2683 - LrgA-associated membrane protein LrgB, at 3,020,410 to 3,021,126
_2683
Pf1N1B4_2684 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 3,021,137 to 3,021,727
_2684
Pf1N1B4_2685 - hypothetical protein, at 3,022,143 to 3,022,721
_2685
Position (kb)
3021
3022 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3020.276 kb on + strand, within Pf1N1B4_2682 at 3020.276 kb on + strand, within Pf1N1B4_2682 at 3020.277 kb on - strand, within Pf1N1B4_2682 at 3020.277 kb on - strand, within Pf1N1B4_2682 at 3020.475 kb on + strand at 3020.475 kb on + strand at 3020.475 kb on + strand at 3020.475 kb on + strand at 3020.476 kb on - strand at 3020.476 kb on - strand at 3020.476 kb on - strand at 3020.488 kb on + strand, within Pf1N1B4_2683 at 3020.488 kb on + strand, within Pf1N1B4_2683 at 3020.509 kb on + strand, within Pf1N1B4_2683 at 3020.510 kb on - strand, within Pf1N1B4_2683 at 3020.631 kb on + strand, within Pf1N1B4_2683 at 3020.631 kb on + strand, within Pf1N1B4_2683 at 3020.631 kb on + strand, within Pf1N1B4_2683 at 3020.632 kb on - strand, within Pf1N1B4_2683 at 3020.632 kb on - strand, within Pf1N1B4_2683 at 3020.674 kb on + strand, within Pf1N1B4_2683 at 3020.674 kb on + strand, within Pf1N1B4_2683 at 3020.675 kb on - strand, within Pf1N1B4_2683 at 3020.718 kb on + strand, within Pf1N1B4_2683 at 3020.718 kb on + strand, within Pf1N1B4_2683 at 3020.718 kb on + strand, within Pf1N1B4_2683 at 3020.719 kb on - strand, within Pf1N1B4_2683 at 3020.721 kb on + strand, within Pf1N1B4_2683 at 3020.722 kb on - strand, within Pf1N1B4_2683 at 3020.722 kb on - strand, within Pf1N1B4_2683 at 3020.732 kb on + strand, within Pf1N1B4_2683 at 3021.136 kb on + strand at 3021.136 kb on + strand at 3021.137 kb on - strand at 3021.608 kb on + strand, within Pf1N1B4_2684 at 3021.639 kb on + strand, within Pf1N1B4_2684 at 3021.639 kb on + strand, within Pf1N1B4_2684 at 3021.639 kb on + strand at 3021.640 kb on + strand, within Pf1N1B4_2684 at 3021.640 kb on - strand, within Pf1N1B4_2684 at 3021.640 kb on - strand, within Pf1N1B4_2684 at 3021.726 kb on - strand at 3021.731 kb on + strand at 3021.731 kb on + strand at 3021.732 kb on - strand at 3021.825 kb on + strand at 3021.826 kb on - strand at 3021.826 kb on - strand at 3021.826 kb on - strand at 3021.826 kb on - strand at 3021.848 kb on - strand at 3021.850 kb on - strand at 3021.850 kb on - strand at 3021.898 kb on + strand at 3021.933 kb on - strand at 3021.954 kb on + strand at 3022.065 kb on + strand at 3022.065 kb on + strand at 3022.066 kb on - strand at 3022.066 kb on - strand at 3022.067 kb on + strand at 3022.067 kb on + strand at 3022.072 kb on + strand at 3022.185 kb on + strand at 3022.232 kb on + strand, within Pf1N1B4_2685 at 3022.233 kb on - strand, within Pf1N1B4_2685 at 3022.310 kb on + strand, within Pf1N1B4_2685 at 3022.310 kb on + strand, within Pf1N1B4_2685 at 3022.311 kb on - strand, within Pf1N1B4_2685 at 3022.380 kb on + strand, within Pf1N1B4_2685 at 3022.381 kb on - strand, within Pf1N1B4_2685 at 3022.455 kb on + strand, within Pf1N1B4_2685 at 3022.455 kb on + strand, within Pf1N1B4_2685 at 3022.455 kb on + strand, within Pf1N1B4_2685 at 3022.456 kb on - strand, within Pf1N1B4_2685 at 3022.457 kb on + strand, within Pf1N1B4_2685 at 3022.458 kb on - strand, within Pf1N1B4_2685 at 3022.496 kb on + strand, within Pf1N1B4_2685 at 3022.496 kb on + strand, within Pf1N1B4_2685 at 3022.496 kb on + strand, within Pf1N1B4_2685 at 3022.497 kb on - strand, within Pf1N1B4_2685 at 3022.497 kb on - strand, within Pf1N1B4_2685 at 3022.497 kb on - strand, within Pf1N1B4_2685 at 3022.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 3,020,276 + Pf1N1B4_2682 0.62 -1.4 3,020,276 + Pf1N1B4_2682 0.62 -1.3 3,020,277 - Pf1N1B4_2682 0.63 -1.3 3,020,277 - Pf1N1B4_2682 0.63 +0.5 3,020,475 + -0.1 3,020,475 + +0.4 3,020,475 + -0.9 3,020,475 + -0.9 3,020,476 - +0.5 3,020,476 - +0.5 3,020,476 - -0.8 3,020,488 + Pf1N1B4_2683 0.11 -0.7 3,020,488 + Pf1N1B4_2683 0.11 +0.8 3,020,509 + Pf1N1B4_2683 0.14 -1.8 3,020,510 - Pf1N1B4_2683 0.14 -0.9 3,020,631 + Pf1N1B4_2683 0.31 -1.5 3,020,631 + Pf1N1B4_2683 0.31 -0.1 3,020,631 + Pf1N1B4_2683 0.31 -1.3 3,020,632 - Pf1N1B4_2683 0.31 +1.1 3,020,632 - Pf1N1B4_2683 0.31 -0.5 3,020,674 + Pf1N1B4_2683 0.37 -0.3 3,020,674 + Pf1N1B4_2683 0.37 +1.5 3,020,675 - Pf1N1B4_2683 0.37 -0.0 3,020,718 + Pf1N1B4_2683 0.43 +2.1 3,020,718 + Pf1N1B4_2683 0.43 +1.1 3,020,718 + Pf1N1B4_2683 0.43 -1.3 3,020,719 - Pf1N1B4_2683 0.43 -0.6 3,020,721 + Pf1N1B4_2683 0.43 +0.5 3,020,722 - Pf1N1B4_2683 0.44 -1.6 3,020,722 - Pf1N1B4_2683 0.44 -0.5 3,020,732 + Pf1N1B4_2683 0.45 +0.7 3,021,136 + +0.5 3,021,136 + +0.2 3,021,137 - +0.3 3,021,608 + Pf1N1B4_2684 0.80 -2.4 3,021,639 + Pf1N1B4_2684 0.85 -1.7 3,021,639 + Pf1N1B4_2684 0.85 -1.1 3,021,639 + +0.9 3,021,640 + Pf1N1B4_2684 0.85 -0.6 3,021,640 - Pf1N1B4_2684 0.85 +0.5 3,021,640 - Pf1N1B4_2684 0.85 +0.5 3,021,726 - -0.8 3,021,731 + +1.5 3,021,731 + +0.5 3,021,732 - +0.4 3,021,825 + +0.5 3,021,826 - +0.1 3,021,826 - -0.8 3,021,826 - +0.1 3,021,826 - -1.1 3,021,848 - +0.3 3,021,850 - +0.6 3,021,850 - +1.1 3,021,898 + +0.9 3,021,933 - +0.2 3,021,954 + +0.5 3,022,065 + +0.3 3,022,065 + +0.8 3,022,066 - +0.8 3,022,066 - -1.3 3,022,067 + -0.3 3,022,067 + +0.5 3,022,072 + -0.1 3,022,185 + -0.1 3,022,232 + Pf1N1B4_2685 0.15 +0.4 3,022,233 - Pf1N1B4_2685 0.16 -0.1 3,022,310 + Pf1N1B4_2685 0.29 -0.1 3,022,310 + Pf1N1B4_2685 0.29 -0.4 3,022,311 - Pf1N1B4_2685 0.29 -0.1 3,022,380 + Pf1N1B4_2685 0.41 +0.5 3,022,381 - Pf1N1B4_2685 0.41 -0.3 3,022,455 + Pf1N1B4_2685 0.54 +0.5 3,022,455 + Pf1N1B4_2685 0.54 +0.7 3,022,455 + Pf1N1B4_2685 0.54 +1.5 3,022,456 - Pf1N1B4_2685 0.54 -1.5 3,022,457 + Pf1N1B4_2685 0.54 -0.7 3,022,458 - Pf1N1B4_2685 0.54 -1.3 3,022,496 + Pf1N1B4_2685 0.61 -0.4 3,022,496 + Pf1N1B4_2685 0.61 +0.5 3,022,496 + Pf1N1B4_2685 0.61 -0.4 3,022,497 - Pf1N1B4_2685 0.61 +0.9 3,022,497 - Pf1N1B4_2685 0.61 -0.9 3,022,497 - Pf1N1B4_2685 0.61 -0.1 3,022,698 - +0.3
Or see this region's nucleotide sequence