Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2684

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2682 and Pf1N1B4_2683 overlap by 1 nucleotidesPf1N1B4_2683 and Pf1N1B4_2684 are separated by 10 nucleotidesPf1N1B4_2684 and Pf1N1B4_2685 are separated by 415 nucleotides Pf1N1B4_2682 - Antiholin-like protein LrgA, at 3,020,051 to 3,020,410 _2682 Pf1N1B4_2683 - LrgA-associated membrane protein LrgB, at 3,020,410 to 3,021,126 _2683 Pf1N1B4_2684 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 3,021,137 to 3,021,727 _2684 Pf1N1B4_2685 - hypothetical protein, at 3,022,143 to 3,022,721 _2685 Position (kb) 3021 3022Strain fitness (log2 ratio) -2 -1 0 1 2at 3020.276 kb on + strand, within Pf1N1B4_2682at 3020.276 kb on + strand, within Pf1N1B4_2682at 3020.277 kb on - strand, within Pf1N1B4_2682at 3020.277 kb on - strand, within Pf1N1B4_2682at 3020.475 kb on + strandat 3020.475 kb on + strandat 3020.475 kb on + strandat 3020.475 kb on + strandat 3020.476 kb on - strandat 3020.476 kb on - strandat 3020.476 kb on - strandat 3020.488 kb on + strand, within Pf1N1B4_2683at 3020.488 kb on + strand, within Pf1N1B4_2683at 3020.509 kb on + strand, within Pf1N1B4_2683at 3020.510 kb on - strand, within Pf1N1B4_2683at 3020.631 kb on + strand, within Pf1N1B4_2683at 3020.631 kb on + strand, within Pf1N1B4_2683at 3020.631 kb on + strand, within Pf1N1B4_2683at 3020.632 kb on - strand, within Pf1N1B4_2683at 3020.632 kb on - strand, within Pf1N1B4_2683at 3020.674 kb on + strand, within Pf1N1B4_2683at 3020.674 kb on + strand, within Pf1N1B4_2683at 3020.675 kb on - strand, within Pf1N1B4_2683at 3020.718 kb on + strand, within Pf1N1B4_2683at 3020.718 kb on + strand, within Pf1N1B4_2683at 3020.718 kb on + strand, within Pf1N1B4_2683at 3020.719 kb on - strand, within Pf1N1B4_2683at 3020.721 kb on + strand, within Pf1N1B4_2683at 3020.722 kb on - strand, within Pf1N1B4_2683at 3020.722 kb on - strand, within Pf1N1B4_2683at 3020.732 kb on + strand, within Pf1N1B4_2683at 3021.136 kb on + strandat 3021.136 kb on + strandat 3021.137 kb on - strandat 3021.608 kb on + strand, within Pf1N1B4_2684at 3021.639 kb on + strand, within Pf1N1B4_2684at 3021.639 kb on + strand, within Pf1N1B4_2684at 3021.639 kb on + strandat 3021.640 kb on + strand, within Pf1N1B4_2684at 3021.640 kb on - strand, within Pf1N1B4_2684at 3021.640 kb on - strand, within Pf1N1B4_2684at 3021.726 kb on - strandat 3021.731 kb on + strandat 3021.731 kb on + strandat 3021.732 kb on - strandat 3021.825 kb on + strandat 3021.826 kb on - strandat 3021.826 kb on - strandat 3021.826 kb on - strandat 3021.826 kb on - strandat 3021.848 kb on - strandat 3021.850 kb on - strandat 3021.850 kb on - strandat 3021.898 kb on + strandat 3021.933 kb on - strandat 3021.954 kb on + strandat 3022.065 kb on + strandat 3022.065 kb on + strandat 3022.066 kb on - strandat 3022.066 kb on - strandat 3022.067 kb on + strandat 3022.067 kb on + strandat 3022.072 kb on + strandat 3022.185 kb on + strandat 3022.232 kb on + strand, within Pf1N1B4_2685at 3022.233 kb on - strand, within Pf1N1B4_2685at 3022.310 kb on + strand, within Pf1N1B4_2685at 3022.310 kb on + strand, within Pf1N1B4_2685at 3022.311 kb on - strand, within Pf1N1B4_2685at 3022.380 kb on + strand, within Pf1N1B4_2685at 3022.381 kb on - strand, within Pf1N1B4_2685at 3022.455 kb on + strand, within Pf1N1B4_2685at 3022.455 kb on + strand, within Pf1N1B4_2685at 3022.455 kb on + strand, within Pf1N1B4_2685at 3022.456 kb on - strand, within Pf1N1B4_2685at 3022.457 kb on + strand, within Pf1N1B4_2685at 3022.458 kb on - strand, within Pf1N1B4_2685at 3022.496 kb on + strand, within Pf1N1B4_2685at 3022.496 kb on + strand, within Pf1N1B4_2685at 3022.496 kb on + strand, within Pf1N1B4_2685at 3022.497 kb on - strand, within Pf1N1B4_2685at 3022.497 kb on - strand, within Pf1N1B4_2685at 3022.497 kb on - strand, within Pf1N1B4_2685at 3022.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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3,020,276 + Pf1N1B4_2682 0.62 -1.4
3,020,276 + Pf1N1B4_2682 0.62 -1.3
3,020,277 - Pf1N1B4_2682 0.63 -1.3
3,020,277 - Pf1N1B4_2682 0.63 +0.5
3,020,475 + -0.1
3,020,475 + +0.4
3,020,475 + -0.9
3,020,475 + -0.9
3,020,476 - +0.5
3,020,476 - +0.5
3,020,476 - -0.8
3,020,488 + Pf1N1B4_2683 0.11 -0.7
3,020,488 + Pf1N1B4_2683 0.11 +0.8
3,020,509 + Pf1N1B4_2683 0.14 -1.8
3,020,510 - Pf1N1B4_2683 0.14 -0.9
3,020,631 + Pf1N1B4_2683 0.31 -1.5
3,020,631 + Pf1N1B4_2683 0.31 -0.1
3,020,631 + Pf1N1B4_2683 0.31 -1.3
3,020,632 - Pf1N1B4_2683 0.31 +1.1
3,020,632 - Pf1N1B4_2683 0.31 -0.5
3,020,674 + Pf1N1B4_2683 0.37 -0.3
3,020,674 + Pf1N1B4_2683 0.37 +1.5
3,020,675 - Pf1N1B4_2683 0.37 -0.0
3,020,718 + Pf1N1B4_2683 0.43 +2.1
3,020,718 + Pf1N1B4_2683 0.43 +1.1
3,020,718 + Pf1N1B4_2683 0.43 -1.3
3,020,719 - Pf1N1B4_2683 0.43 -0.6
3,020,721 + Pf1N1B4_2683 0.43 +0.5
3,020,722 - Pf1N1B4_2683 0.44 -1.6
3,020,722 - Pf1N1B4_2683 0.44 -0.5
3,020,732 + Pf1N1B4_2683 0.45 +0.7
3,021,136 + +0.5
3,021,136 + +0.2
3,021,137 - +0.3
3,021,608 + Pf1N1B4_2684 0.80 -2.4
3,021,639 + Pf1N1B4_2684 0.85 -1.7
3,021,639 + Pf1N1B4_2684 0.85 -1.1
3,021,639 + +0.9
3,021,640 + Pf1N1B4_2684 0.85 -0.6
3,021,640 - Pf1N1B4_2684 0.85 +0.5
3,021,640 - Pf1N1B4_2684 0.85 +0.5
3,021,726 - -0.8
3,021,731 + +1.5
3,021,731 + +0.5
3,021,732 - +0.4
3,021,825 + +0.5
3,021,826 - +0.1
3,021,826 - -0.8
3,021,826 - +0.1
3,021,826 - -1.1
3,021,848 - +0.3
3,021,850 - +0.6
3,021,850 - +1.1
3,021,898 + +0.9
3,021,933 - +0.2
3,021,954 + +0.5
3,022,065 + +0.3
3,022,065 + +0.8
3,022,066 - +0.8
3,022,066 - -1.3
3,022,067 + -0.3
3,022,067 + +0.5
3,022,072 + -0.1
3,022,185 + -0.1
3,022,232 + Pf1N1B4_2685 0.15 +0.4
3,022,233 - Pf1N1B4_2685 0.16 -0.1
3,022,310 + Pf1N1B4_2685 0.29 -0.1
3,022,310 + Pf1N1B4_2685 0.29 -0.4
3,022,311 - Pf1N1B4_2685 0.29 -0.1
3,022,380 + Pf1N1B4_2685 0.41 +0.5
3,022,381 - Pf1N1B4_2685 0.41 -0.3
3,022,455 + Pf1N1B4_2685 0.54 +0.5
3,022,455 + Pf1N1B4_2685 0.54 +0.7
3,022,455 + Pf1N1B4_2685 0.54 +1.5
3,022,456 - Pf1N1B4_2685 0.54 -1.5
3,022,457 + Pf1N1B4_2685 0.54 -0.7
3,022,458 - Pf1N1B4_2685 0.54 -1.3
3,022,496 + Pf1N1B4_2685 0.61 -0.4
3,022,496 + Pf1N1B4_2685 0.61 +0.5
3,022,496 + Pf1N1B4_2685 0.61 -0.4
3,022,497 - Pf1N1B4_2685 0.61 +0.9
3,022,497 - Pf1N1B4_2685 0.61 -0.9
3,022,497 - Pf1N1B4_2685 0.61 -0.1
3,022,698 - +0.3

Or see this region's nucleotide sequence