Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2234

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2233 and Pf1N1B4_2234 are separated by 404 nucleotidesPf1N1B4_2234 and Pf1N1B4_2235 are separated by 50 nucleotidesPf1N1B4_2235 and Pf1N1B4_2236 are separated by 269 nucleotides Pf1N1B4_2233 - Ferric iron ABC transporter, permease protein, at 2,545,311 to 2,546,894 _2233 Pf1N1B4_2234 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 2,547,299 to 2,548,132 _2234 Pf1N1B4_2235 - Glycine cleavage system H protein, at 2,548,183 to 2,548,569 _2235 Pf1N1B4_2236 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 2,548,839 to 2,551,712 _2236 Position (kb) 2547 2548 2549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2546.427 kb on + strand, within Pf1N1B4_2233at 2546.428 kb on - strandat 2546.523 kb on + strand, within Pf1N1B4_2233at 2546.524 kb on - strand, within Pf1N1B4_2233at 2546.609 kb on + strand, within Pf1N1B4_2233at 2546.610 kb on - strand, within Pf1N1B4_2233at 2546.649 kb on + strand, within Pf1N1B4_2233at 2546.649 kb on + strand, within Pf1N1B4_2233at 2546.649 kb on + strand, within Pf1N1B4_2233at 2546.650 kb on - strand, within Pf1N1B4_2233at 2546.650 kb on - strand, within Pf1N1B4_2233at 2546.892 kb on + strandat 2546.892 kb on + strandat 2546.905 kb on + strandat 2546.906 kb on - strandat 2546.906 kb on - strandat 2546.918 kb on + strandat 2546.918 kb on + strandat 2546.918 kb on + strandat 2546.919 kb on - strandat 2547.063 kb on - strandat 2547.073 kb on - strandat 2547.073 kb on - strandat 2547.196 kb on + strandat 2547.252 kb on - strandat 2547.255 kb on + strandat 2547.256 kb on - strandat 2547.303 kb on - strandat 2547.303 kb on - strandat 2547.354 kb on - strandat 2547.563 kb on + strand, within Pf1N1B4_2234at 2547.564 kb on - strand, within Pf1N1B4_2234at 2547.691 kb on + strand, within Pf1N1B4_2234at 2547.692 kb on - strand, within Pf1N1B4_2234at 2547.879 kb on + strand, within Pf1N1B4_2234at 2547.879 kb on + strand, within Pf1N1B4_2234at 2547.982 kb on + strand, within Pf1N1B4_2234at 2547.983 kb on - strand, within Pf1N1B4_2234at 2547.983 kb on - strand, within Pf1N1B4_2234at 2547.983 kb on - strand, within Pf1N1B4_2234at 2547.983 kb on - strand, within Pf1N1B4_2234at 2547.994 kb on + strand, within Pf1N1B4_2234at 2547.994 kb on + strand, within Pf1N1B4_2234at 2547.994 kb on + strand, within Pf1N1B4_2234at 2548.001 kb on - strand, within Pf1N1B4_2234at 2548.027 kb on - strand, within Pf1N1B4_2234at 2548.131 kb on - strandat 2548.238 kb on + strand, within Pf1N1B4_2235at 2548.238 kb on + strand, within Pf1N1B4_2235at 2548.239 kb on - strand, within Pf1N1B4_2235at 2548.239 kb on - strand, within Pf1N1B4_2235at 2548.266 kb on + strand, within Pf1N1B4_2235at 2548.266 kb on + strand, within Pf1N1B4_2235at 2548.266 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.301 kb on + strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.302 kb on - strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.393 kb on + strand, within Pf1N1B4_2235at 2548.394 kb on - strand, within Pf1N1B4_2235at 2548.394 kb on - strand, within Pf1N1B4_2235at 2548.394 kb on - strand, within Pf1N1B4_2235at 2548.471 kb on + strand, within Pf1N1B4_2235at 2548.471 kb on + strand, within Pf1N1B4_2235at 2548.471 kb on + strand, within Pf1N1B4_2235at 2548.471 kb on + strand, within Pf1N1B4_2235at 2548.471 kb on + strand, within Pf1N1B4_2235at 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.546 kb on + strandat 2548.547 kb on - strandat 2548.547 kb on - strandat 2548.547 kb on - strandat 2548.567 kb on + strandat 2548.568 kb on - strandat 2548.582 kb on - strandat 2548.642 kb on + strandat 2548.642 kb on + strandat 2548.643 kb on - strandat 2548.643 kb on - strandat 2548.689 kb on + strandat 2548.689 kb on + strandat 2548.689 kb on + strandat 2548.690 kb on - strandat 2548.691 kb on + strandat 2548.691 kb on + strandat 2548.692 kb on - strandat 2548.692 kb on - strandat 2548.739 kb on + strandat 2548.739 kb on + strandat 2548.739 kb on + strandat 2548.739 kb on + strandat 2548.739 kb on + strandat 2548.782 kb on + strandat 2548.783 kb on - strandat 2548.880 kb on + strandat 2548.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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2,546,427 + Pf1N1B4_2233 0.70 -0.4
2,546,428 - +0.7
2,546,523 + Pf1N1B4_2233 0.77 +1.2
2,546,524 - Pf1N1B4_2233 0.77 -1.0
2,546,609 + Pf1N1B4_2233 0.82 -1.1
2,546,610 - Pf1N1B4_2233 0.82 -0.3
2,546,649 + Pf1N1B4_2233 0.84 +1.0
2,546,649 + Pf1N1B4_2233 0.84 +1.7
2,546,649 + Pf1N1B4_2233 0.84 +1.7
2,546,650 - Pf1N1B4_2233 0.85 -0.3
2,546,650 - Pf1N1B4_2233 0.85 +0.1
2,546,892 + -1.8
2,546,892 + -0.3
2,546,905 + +1.3
2,546,906 - -0.6
2,546,906 - -0.6
2,546,918 + +0.0
2,546,918 + +0.0
2,546,918 + -0.6
2,546,919 - +0.7
2,547,063 - +1.7
2,547,073 - +1.1
2,547,073 - -0.9
2,547,196 + -1.4
2,547,252 - +0.1
2,547,255 + -0.3
2,547,256 - +0.5
2,547,303 - -0.6
2,547,303 - +1.3
2,547,354 - -0.8
2,547,563 + Pf1N1B4_2234 0.32 -1.9
2,547,564 - Pf1N1B4_2234 0.32 +0.1
2,547,691 + Pf1N1B4_2234 0.47 -0.1
2,547,692 - Pf1N1B4_2234 0.47 -2.2
2,547,879 + Pf1N1B4_2234 0.70 -1.0
2,547,879 + Pf1N1B4_2234 0.70 -1.3
2,547,982 + Pf1N1B4_2234 0.82 +0.2
2,547,983 - Pf1N1B4_2234 0.82 +0.5
2,547,983 - Pf1N1B4_2234 0.82 +1.0
2,547,983 - Pf1N1B4_2234 0.82 +0.4
2,547,983 - Pf1N1B4_2234 0.82 -2.2
2,547,994 + Pf1N1B4_2234 0.83 -0.5
2,547,994 + Pf1N1B4_2234 0.83 -0.4
2,547,994 + Pf1N1B4_2234 0.83 +0.2
2,548,001 - Pf1N1B4_2234 0.84 -1.2
2,548,027 - Pf1N1B4_2234 0.87 -1.5
2,548,131 - +0.4
2,548,238 + Pf1N1B4_2235 0.14 +2.3
2,548,238 + Pf1N1B4_2235 0.14 -1.9
2,548,239 - Pf1N1B4_2235 0.14 -1.0
2,548,239 - Pf1N1B4_2235 0.14 -0.3
2,548,266 + Pf1N1B4_2235 0.21 -1.3
2,548,266 + Pf1N1B4_2235 0.21 -0.2
2,548,266 + Pf1N1B4_2235 0.21 -1.5
2,548,301 + Pf1N1B4_2235 0.30 -0.1
2,548,301 + Pf1N1B4_2235 0.30 +1.0
2,548,301 + Pf1N1B4_2235 0.30 +1.1
2,548,301 + Pf1N1B4_2235 0.30 -0.2
2,548,301 + Pf1N1B4_2235 0.30 +0.3
2,548,301 + Pf1N1B4_2235 0.30 -1.1
2,548,301 + Pf1N1B4_2235 0.30 -1.0
2,548,301 + Pf1N1B4_2235 0.30 +0.6
2,548,301 + Pf1N1B4_2235 0.30 -1.8
2,548,301 + Pf1N1B4_2235 0.30 -0.4
2,548,301 + Pf1N1B4_2235 0.30 +1.1
2,548,301 + Pf1N1B4_2235 0.30 -0.5
2,548,301 + Pf1N1B4_2235 0.30 +1.7
2,548,301 + Pf1N1B4_2235 0.30 -0.9
2,548,301 + Pf1N1B4_2235 0.30 -0.9
2,548,301 + Pf1N1B4_2235 0.30 +0.0
2,548,301 + Pf1N1B4_2235 0.30 +0.3
2,548,301 + Pf1N1B4_2235 0.30 +0.9
2,548,301 + Pf1N1B4_2235 0.30 +0.7
2,548,301 + Pf1N1B4_2235 0.30 -0.3
2,548,301 + Pf1N1B4_2235 0.30 -1.5
2,548,301 + Pf1N1B4_2235 0.30 +2.3
2,548,301 + Pf1N1B4_2235 0.30 +0.3
2,548,301 + Pf1N1B4_2235 0.30 +0.9
2,548,301 + Pf1N1B4_2235 0.30 -0.7
2,548,301 + Pf1N1B4_2235 0.30 -1.6
2,548,301 + Pf1N1B4_2235 0.30 +0.9
2,548,302 - Pf1N1B4_2235 0.31 +1.0
2,548,302 - Pf1N1B4_2235 0.31 +0.7
2,548,302 - Pf1N1B4_2235 0.31 -1.8
2,548,302 - Pf1N1B4_2235 0.31 -0.5
2,548,302 - Pf1N1B4_2235 0.31 +1.3
2,548,302 - Pf1N1B4_2235 0.31 -1.7
2,548,302 - Pf1N1B4_2235 0.31 +0.1
2,548,393 + Pf1N1B4_2235 0.54 +0.8
2,548,393 + Pf1N1B4_2235 0.54 +0.7
2,548,393 + Pf1N1B4_2235 0.54 -0.3
2,548,393 + Pf1N1B4_2235 0.54 +1.0
2,548,393 + Pf1N1B4_2235 0.54 +0.4
2,548,393 + Pf1N1B4_2235 0.54 +0.3
2,548,393 + Pf1N1B4_2235 0.54 -0.1
2,548,393 + Pf1N1B4_2235 0.54 +0.4
2,548,393 + Pf1N1B4_2235 0.54 +1.7
2,548,393 + Pf1N1B4_2235 0.54 -0.6
2,548,393 + Pf1N1B4_2235 0.54 +0.1
2,548,393 + Pf1N1B4_2235 0.54 -1.3
2,548,394 - Pf1N1B4_2235 0.55 -0.9
2,548,394 - Pf1N1B4_2235 0.55 -1.5
2,548,394 - Pf1N1B4_2235 0.55 -0.1
2,548,471 + Pf1N1B4_2235 0.74 -0.3
2,548,471 + Pf1N1B4_2235 0.74 +0.6
2,548,471 + Pf1N1B4_2235 0.74 +0.7
2,548,471 + Pf1N1B4_2235 0.74 +1.1
2,548,471 + Pf1N1B4_2235 0.74 +0.9
2,548,546 + -1.0
2,548,546 + +1.7
2,548,546 + -0.2
2,548,546 + -0.9
2,548,546 + +1.3
2,548,546 + +1.3
2,548,546 + -0.6
2,548,546 + -0.7
2,548,546 + -1.6
2,548,547 - -0.6
2,548,547 - -0.5
2,548,547 - -0.4
2,548,567 + -0.4
2,548,568 - -0.8
2,548,582 - +0.0
2,548,642 + -0.6
2,548,642 + +0.0
2,548,643 - +1.3
2,548,643 - +0.3
2,548,689 + -0.3
2,548,689 + +3.3
2,548,689 + -0.7
2,548,690 - +1.0
2,548,691 + -0.6
2,548,691 + -0.1
2,548,692 - -0.1
2,548,692 - +1.7
2,548,739 + +0.2
2,548,739 + +0.7
2,548,739 + +3.7
2,548,739 + +1.0
2,548,739 + +0.6
2,548,782 + +0.1
2,548,783 - +1.3
2,548,880 + -0.3
2,548,880 + +0.1

Or see this region's nucleotide sequence