Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2145

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2144 and Pf1N1B4_2145 overlap by 29 nucleotidesPf1N1B4_2145 and Pf1N1B4_2146 are separated by 97 nucleotides Pf1N1B4_2144 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 2,454,539 to 2,455,843 _2144 Pf1N1B4_2145 - Translation initiation inhibitor, at 2,455,815 to 2,456,168 _2145 Pf1N1B4_2146 - Alanine racemase (EC 5.1.1.1), at 2,456,266 to 2,457,339 _2146 Position (kb) 2455 2456 2457Strain fitness (log2 ratio) -2 -1 0 1at 2454.878 kb on + strand, within Pf1N1B4_2144at 2454.927 kb on - strand, within Pf1N1B4_2144at 2455.283 kb on + strand, within Pf1N1B4_2144at 2455.283 kb on + strand, within Pf1N1B4_2144at 2455.305 kb on - strand, within Pf1N1B4_2144at 2455.305 kb on - strand, within Pf1N1B4_2144at 2455.349 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.430 kb on + strand, within Pf1N1B4_2144at 2455.431 kb on - strand, within Pf1N1B4_2144at 2455.431 kb on - strand, within Pf1N1B4_2144at 2455.431 kb on - strand, within Pf1N1B4_2144at 2455.431 kb on - strand, within Pf1N1B4_2144at 2455.431 kb on - strand, within Pf1N1B4_2144at 2455.431 kb on - strand, within Pf1N1B4_2144at 2455.432 kb on + strand, within Pf1N1B4_2144at 2455.432 kb on + strand, within Pf1N1B4_2144at 2455.432 kb on + strand, within Pf1N1B4_2144at 2455.432 kb on + strand, within Pf1N1B4_2144at 2455.432 kb on + strand, within Pf1N1B4_2144at 2455.433 kb on - strand, within Pf1N1B4_2144at 2455.433 kb on - strand, within Pf1N1B4_2144at 2455.433 kb on - strand, within Pf1N1B4_2144at 2455.774 kb on + strandat 2455.774 kb on + strandat 2455.874 kb on + strand, within Pf1N1B4_2145at 2456.013 kb on + strand, within Pf1N1B4_2145at 2456.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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2,454,878 + Pf1N1B4_2144 0.26 +0.7
2,454,927 - Pf1N1B4_2144 0.30 -0.6
2,455,283 + Pf1N1B4_2144 0.57 -1.1
2,455,283 + Pf1N1B4_2144 0.57 -0.7
2,455,305 - Pf1N1B4_2144 0.59 +0.1
2,455,305 - Pf1N1B4_2144 0.59 -0.3
2,455,349 + Pf1N1B4_2144 0.62 +0.7
2,455,430 + Pf1N1B4_2144 0.68 -1.1
2,455,430 + Pf1N1B4_2144 0.68 -0.3
2,455,430 + Pf1N1B4_2144 0.68 +0.1
2,455,430 + Pf1N1B4_2144 0.68 +0.7
2,455,430 + Pf1N1B4_2144 0.68 +0.4
2,455,430 + Pf1N1B4_2144 0.68 -1.4
2,455,430 + Pf1N1B4_2144 0.68 +0.6
2,455,430 + Pf1N1B4_2144 0.68 -1.6
2,455,430 + Pf1N1B4_2144 0.68 -0.7
2,455,430 + Pf1N1B4_2144 0.68 -0.2
2,455,430 + Pf1N1B4_2144 0.68 -0.3
2,455,430 + Pf1N1B4_2144 0.68 -0.3
2,455,430 + Pf1N1B4_2144 0.68 -0.6
2,455,430 + Pf1N1B4_2144 0.68 +0.6
2,455,430 + Pf1N1B4_2144 0.68 -1.3
2,455,430 + Pf1N1B4_2144 0.68 -0.4
2,455,430 + Pf1N1B4_2144 0.68 +1.1
2,455,430 + Pf1N1B4_2144 0.68 -0.1
2,455,430 + Pf1N1B4_2144 0.68 -0.6
2,455,430 + Pf1N1B4_2144 0.68 -0.4
2,455,430 + Pf1N1B4_2144 0.68 +0.5
2,455,430 + Pf1N1B4_2144 0.68 +0.1
2,455,430 + Pf1N1B4_2144 0.68 -0.7
2,455,430 + Pf1N1B4_2144 0.68 +0.4
2,455,431 - Pf1N1B4_2144 0.68 +1.7
2,455,431 - Pf1N1B4_2144 0.68 -1.7
2,455,431 - Pf1N1B4_2144 0.68 -0.9
2,455,431 - Pf1N1B4_2144 0.68 +0.9
2,455,431 - Pf1N1B4_2144 0.68 -1.3
2,455,431 - Pf1N1B4_2144 0.68 +0.1
2,455,432 + Pf1N1B4_2144 0.68 +0.4
2,455,432 + Pf1N1B4_2144 0.68 -1.9
2,455,432 + Pf1N1B4_2144 0.68 +0.1
2,455,432 + Pf1N1B4_2144 0.68 -0.6
2,455,432 + Pf1N1B4_2144 0.68 -0.5
2,455,433 - Pf1N1B4_2144 0.69 -1.3
2,455,433 - Pf1N1B4_2144 0.69 -0.1
2,455,433 - Pf1N1B4_2144 0.69 -0.9
2,455,774 + +1.2
2,455,774 + +0.5
2,455,874 + Pf1N1B4_2145 0.17 -1.7
2,456,013 + Pf1N1B4_2145 0.56 -0.6
2,456,251 + -0.3

Or see this region's nucleotide sequence