Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2144 and Pf1N1B4_2145 overlap by 29 nucleotides Pf1N1B4_2145 and Pf1N1B4_2146 are separated by 97 nucleotides
Pf1N1B4_2144 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 2,454,539 to 2,455,843
_2144
Pf1N1B4_2145 - Translation initiation inhibitor, at 2,455,815 to 2,456,168
_2145
Pf1N1B4_2146 - Alanine racemase (EC 5.1.1.1), at 2,456,266 to 2,457,339
_2146
Position (kb)
2455
2456
2457 Strain fitness (log2 ratio)
-2
-1
0
1 at 2454.878 kb on + strand, within Pf1N1B4_2144 at 2454.927 kb on - strand, within Pf1N1B4_2144 at 2455.283 kb on + strand, within Pf1N1B4_2144 at 2455.283 kb on + strand, within Pf1N1B4_2144 at 2455.305 kb on - strand, within Pf1N1B4_2144 at 2455.305 kb on - strand, within Pf1N1B4_2144 at 2455.349 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.430 kb on + strand, within Pf1N1B4_2144 at 2455.431 kb on - strand, within Pf1N1B4_2144 at 2455.431 kb on - strand, within Pf1N1B4_2144 at 2455.431 kb on - strand, within Pf1N1B4_2144 at 2455.431 kb on - strand, within Pf1N1B4_2144 at 2455.431 kb on - strand, within Pf1N1B4_2144 at 2455.431 kb on - strand, within Pf1N1B4_2144 at 2455.432 kb on + strand, within Pf1N1B4_2144 at 2455.432 kb on + strand, within Pf1N1B4_2144 at 2455.432 kb on + strand, within Pf1N1B4_2144 at 2455.432 kb on + strand, within Pf1N1B4_2144 at 2455.432 kb on + strand, within Pf1N1B4_2144 at 2455.433 kb on - strand, within Pf1N1B4_2144 at 2455.433 kb on - strand, within Pf1N1B4_2144 at 2455.433 kb on - strand, within Pf1N1B4_2144 at 2455.774 kb on + strand at 2455.774 kb on + strand at 2455.874 kb on + strand, within Pf1N1B4_2145 at 2456.013 kb on + strand, within Pf1N1B4_2145 at 2456.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 2,454,878 + Pf1N1B4_2144 0.26 +0.7 2,454,927 - Pf1N1B4_2144 0.30 -0.6 2,455,283 + Pf1N1B4_2144 0.57 -1.1 2,455,283 + Pf1N1B4_2144 0.57 -0.7 2,455,305 - Pf1N1B4_2144 0.59 +0.1 2,455,305 - Pf1N1B4_2144 0.59 -0.3 2,455,349 + Pf1N1B4_2144 0.62 +0.7 2,455,430 + Pf1N1B4_2144 0.68 -1.1 2,455,430 + Pf1N1B4_2144 0.68 -0.3 2,455,430 + Pf1N1B4_2144 0.68 +0.1 2,455,430 + Pf1N1B4_2144 0.68 +0.7 2,455,430 + Pf1N1B4_2144 0.68 +0.4 2,455,430 + Pf1N1B4_2144 0.68 -1.4 2,455,430 + Pf1N1B4_2144 0.68 +0.6 2,455,430 + Pf1N1B4_2144 0.68 -1.6 2,455,430 + Pf1N1B4_2144 0.68 -0.7 2,455,430 + Pf1N1B4_2144 0.68 -0.2 2,455,430 + Pf1N1B4_2144 0.68 -0.3 2,455,430 + Pf1N1B4_2144 0.68 -0.3 2,455,430 + Pf1N1B4_2144 0.68 -0.6 2,455,430 + Pf1N1B4_2144 0.68 +0.6 2,455,430 + Pf1N1B4_2144 0.68 -1.3 2,455,430 + Pf1N1B4_2144 0.68 -0.4 2,455,430 + Pf1N1B4_2144 0.68 +1.1 2,455,430 + Pf1N1B4_2144 0.68 -0.1 2,455,430 + Pf1N1B4_2144 0.68 -0.6 2,455,430 + Pf1N1B4_2144 0.68 -0.4 2,455,430 + Pf1N1B4_2144 0.68 +0.5 2,455,430 + Pf1N1B4_2144 0.68 +0.1 2,455,430 + Pf1N1B4_2144 0.68 -0.7 2,455,430 + Pf1N1B4_2144 0.68 +0.4 2,455,431 - Pf1N1B4_2144 0.68 +1.7 2,455,431 - Pf1N1B4_2144 0.68 -1.7 2,455,431 - Pf1N1B4_2144 0.68 -0.9 2,455,431 - Pf1N1B4_2144 0.68 +0.9 2,455,431 - Pf1N1B4_2144 0.68 -1.3 2,455,431 - Pf1N1B4_2144 0.68 +0.1 2,455,432 + Pf1N1B4_2144 0.68 +0.4 2,455,432 + Pf1N1B4_2144 0.68 -1.9 2,455,432 + Pf1N1B4_2144 0.68 +0.1 2,455,432 + Pf1N1B4_2144 0.68 -0.6 2,455,432 + Pf1N1B4_2144 0.68 -0.5 2,455,433 - Pf1N1B4_2144 0.69 -1.3 2,455,433 - Pf1N1B4_2144 0.69 -0.1 2,455,433 - Pf1N1B4_2144 0.69 -0.9 2,455,774 + +1.2 2,455,774 + +0.5 2,455,874 + Pf1N1B4_2145 0.17 -1.7 2,456,013 + Pf1N1B4_2145 0.56 -0.6 2,456,251 + -0.3
Or see this region's nucleotide sequence