Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2089 and Pf1N1B4_2090 are separated by 271 nucleotides Pf1N1B4_2090 and Pf1N1B4_2091 are separated by 17 nucleotides
Pf1N1B4_2089 - Sigma-54 dependent transcriptional regulator, at 2,394,216 to 2,395,733
_2089
Pf1N1B4_2090 - FIG00959590: hypothetical protein, at 2,396,005 to 2,396,145
_2090
Pf1N1B4_2091 - Uncharacterized protein ImpI/VasC, at 2,396,163 to 2,397,359
_2091
Position (kb)
2396
2397 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2395.275 kb on + strand, within Pf1N1B4_2089 at 2395.275 kb on + strand, within Pf1N1B4_2089 at 2395.275 kb on + strand, within Pf1N1B4_2089 at 2395.275 kb on + strand, within Pf1N1B4_2089 at 2395.275 kb on + strand, within Pf1N1B4_2089 at 2395.275 kb on + strand, within Pf1N1B4_2089 at 2395.276 kb on - strand, within Pf1N1B4_2089 at 2395.276 kb on - strand, within Pf1N1B4_2089 at 2395.276 kb on - strand, within Pf1N1B4_2089 at 2395.276 kb on - strand, within Pf1N1B4_2089 at 2395.827 kb on + strand at 2395.827 kb on + strand at 2395.914 kb on + strand at 2395.944 kb on + strand at 2396.051 kb on + strand, within Pf1N1B4_2090 at 2396.052 kb on - strand, within Pf1N1B4_2090 at 2396.080 kb on + strand at 2396.080 kb on + strand, within Pf1N1B4_2090 at 2396.081 kb on - strand, within Pf1N1B4_2090 at 2396.086 kb on + strand, within Pf1N1B4_2090 at 2396.086 kb on + strand, within Pf1N1B4_2090 at 2396.086 kb on + strand, within Pf1N1B4_2090 at 2396.087 kb on - strand, within Pf1N1B4_2090 at 2396.087 kb on - strand, within Pf1N1B4_2090 at 2396.087 kb on - strand, within Pf1N1B4_2090 at 2396.087 kb on - strand, within Pf1N1B4_2090 at 2396.102 kb on - strand, within Pf1N1B4_2090 at 2396.156 kb on + strand at 2396.156 kb on + strand at 2396.156 kb on + strand at 2396.156 kb on + strand at 2396.157 kb on - strand at 2396.443 kb on - strand, within Pf1N1B4_2091 at 2396.443 kb on - strand, within Pf1N1B4_2091 at 2396.602 kb on - strand, within Pf1N1B4_2091
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 2,395,275 + Pf1N1B4_2089 0.70 -0.4 2,395,275 + Pf1N1B4_2089 0.70 +0.7 2,395,275 + Pf1N1B4_2089 0.70 +0.2 2,395,275 + Pf1N1B4_2089 0.70 -0.4 2,395,275 + Pf1N1B4_2089 0.70 -0.3 2,395,275 + Pf1N1B4_2089 0.70 +0.7 2,395,276 - Pf1N1B4_2089 0.70 -0.1 2,395,276 - Pf1N1B4_2089 0.70 -0.3 2,395,276 - Pf1N1B4_2089 0.70 +1.0 2,395,276 - Pf1N1B4_2089 0.70 +1.9 2,395,827 + -0.3 2,395,827 + +0.2 2,395,914 + +0.7 2,395,944 + -2.4 2,396,051 + Pf1N1B4_2090 0.33 -1.0 2,396,052 - Pf1N1B4_2090 0.33 +1.7 2,396,080 + +1.7 2,396,080 + Pf1N1B4_2090 0.53 +0.3 2,396,081 - Pf1N1B4_2090 0.54 -1.1 2,396,086 + Pf1N1B4_2090 0.57 -0.8 2,396,086 + Pf1N1B4_2090 0.57 -1.2 2,396,086 + Pf1N1B4_2090 0.57 +0.5 2,396,087 - Pf1N1B4_2090 0.58 +0.5 2,396,087 - Pf1N1B4_2090 0.58 -0.8 2,396,087 - Pf1N1B4_2090 0.58 -1.8 2,396,087 - Pf1N1B4_2090 0.58 +0.2 2,396,102 - Pf1N1B4_2090 0.69 -1.3 2,396,156 + -1.7 2,396,156 + -0.8 2,396,156 + -0.6 2,396,156 + -0.6 2,396,157 - -0.8 2,396,443 - Pf1N1B4_2091 0.23 +1.4 2,396,443 - Pf1N1B4_2091 0.23 -0.6 2,396,602 - Pf1N1B4_2091 0.37 +1.7
Or see this region's nucleotide sequence