Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2090

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2089 and Pf1N1B4_2090 are separated by 271 nucleotidesPf1N1B4_2090 and Pf1N1B4_2091 are separated by 17 nucleotides Pf1N1B4_2089 - Sigma-54 dependent transcriptional regulator, at 2,394,216 to 2,395,733 _2089 Pf1N1B4_2090 - FIG00959590: hypothetical protein, at 2,396,005 to 2,396,145 _2090 Pf1N1B4_2091 - Uncharacterized protein ImpI/VasC, at 2,396,163 to 2,397,359 _2091 Position (kb) 2396 2397Strain fitness (log2 ratio) -2 -1 0 1 2at 2395.275 kb on + strand, within Pf1N1B4_2089at 2395.275 kb on + strand, within Pf1N1B4_2089at 2395.275 kb on + strand, within Pf1N1B4_2089at 2395.275 kb on + strand, within Pf1N1B4_2089at 2395.275 kb on + strand, within Pf1N1B4_2089at 2395.275 kb on + strand, within Pf1N1B4_2089at 2395.276 kb on - strand, within Pf1N1B4_2089at 2395.276 kb on - strand, within Pf1N1B4_2089at 2395.276 kb on - strand, within Pf1N1B4_2089at 2395.276 kb on - strand, within Pf1N1B4_2089at 2395.827 kb on + strandat 2395.827 kb on + strandat 2395.914 kb on + strandat 2395.944 kb on + strandat 2396.051 kb on + strand, within Pf1N1B4_2090at 2396.052 kb on - strand, within Pf1N1B4_2090at 2396.080 kb on + strandat 2396.080 kb on + strand, within Pf1N1B4_2090at 2396.081 kb on - strand, within Pf1N1B4_2090at 2396.086 kb on + strand, within Pf1N1B4_2090at 2396.086 kb on + strand, within Pf1N1B4_2090at 2396.086 kb on + strand, within Pf1N1B4_2090at 2396.087 kb on - strand, within Pf1N1B4_2090at 2396.087 kb on - strand, within Pf1N1B4_2090at 2396.087 kb on - strand, within Pf1N1B4_2090at 2396.087 kb on - strand, within Pf1N1B4_2090at 2396.102 kb on - strand, within Pf1N1B4_2090at 2396.156 kb on + strandat 2396.156 kb on + strandat 2396.156 kb on + strandat 2396.156 kb on + strandat 2396.157 kb on - strandat 2396.443 kb on - strand, within Pf1N1B4_2091at 2396.443 kb on - strand, within Pf1N1B4_2091at 2396.602 kb on - strand, within Pf1N1B4_2091

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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2,395,275 + Pf1N1B4_2089 0.70 -0.4
2,395,275 + Pf1N1B4_2089 0.70 +0.7
2,395,275 + Pf1N1B4_2089 0.70 +0.2
2,395,275 + Pf1N1B4_2089 0.70 -0.4
2,395,275 + Pf1N1B4_2089 0.70 -0.3
2,395,275 + Pf1N1B4_2089 0.70 +0.7
2,395,276 - Pf1N1B4_2089 0.70 -0.1
2,395,276 - Pf1N1B4_2089 0.70 -0.3
2,395,276 - Pf1N1B4_2089 0.70 +1.0
2,395,276 - Pf1N1B4_2089 0.70 +1.9
2,395,827 + -0.3
2,395,827 + +0.2
2,395,914 + +0.7
2,395,944 + -2.4
2,396,051 + Pf1N1B4_2090 0.33 -1.0
2,396,052 - Pf1N1B4_2090 0.33 +1.7
2,396,080 + +1.7
2,396,080 + Pf1N1B4_2090 0.53 +0.3
2,396,081 - Pf1N1B4_2090 0.54 -1.1
2,396,086 + Pf1N1B4_2090 0.57 -0.8
2,396,086 + Pf1N1B4_2090 0.57 -1.2
2,396,086 + Pf1N1B4_2090 0.57 +0.5
2,396,087 - Pf1N1B4_2090 0.58 +0.5
2,396,087 - Pf1N1B4_2090 0.58 -0.8
2,396,087 - Pf1N1B4_2090 0.58 -1.8
2,396,087 - Pf1N1B4_2090 0.58 +0.2
2,396,102 - Pf1N1B4_2090 0.69 -1.3
2,396,156 + -1.7
2,396,156 + -0.8
2,396,156 + -0.6
2,396,156 + -0.6
2,396,157 - -0.8
2,396,443 - Pf1N1B4_2091 0.23 +1.4
2,396,443 - Pf1N1B4_2091 0.23 -0.6
2,396,602 - Pf1N1B4_2091 0.37 +1.7

Or see this region's nucleotide sequence