Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1945 and Pf1N1B4_1946 are separated by 204 nucleotides Pf1N1B4_1946 and Pf1N1B4_1947 are separated by 1 nucleotides
Pf1N1B4_1945 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 2,225,060 to 2,226,427
_1945
Pf1N1B4_1946 - Transcriptional regulator of glmS gene, DeoR family, at 2,226,632 to 2,227,408
_1946
Pf1N1B4_1947 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 2,227,410 to 2,229,242
_1947
Position (kb)
2226
2227
2228 Strain fitness (log2 ratio)
-2
-1
0
1 at 2226.430 kb on + strand at 2226.496 kb on - strand at 2226.860 kb on + strand, within Pf1N1B4_1946 at 2226.860 kb on + strand, within Pf1N1B4_1946 at 2226.860 kb on + strand, within Pf1N1B4_1946 at 2227.001 kb on + strand, within Pf1N1B4_1946 at 2227.001 kb on + strand, within Pf1N1B4_1946 at 2227.001 kb on + strand, within Pf1N1B4_1946 at 2227.001 kb on + strand, within Pf1N1B4_1946 at 2227.110 kb on + strand, within Pf1N1B4_1946 at 2227.110 kb on + strand, within Pf1N1B4_1946 at 2227.113 kb on + strand, within Pf1N1B4_1946 at 2227.121 kb on + strand, within Pf1N1B4_1946 at 2227.121 kb on + strand, within Pf1N1B4_1946 at 2227.137 kb on + strand, within Pf1N1B4_1946 at 2227.137 kb on + strand, within Pf1N1B4_1946 at 2227.137 kb on + strand, within Pf1N1B4_1946 at 2227.309 kb on + strand, within Pf1N1B4_1946 at 2227.318 kb on + strand, within Pf1N1B4_1946 at 2227.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 2,226,430 + -1.8 2,226,496 - +0.2 2,226,860 + Pf1N1B4_1946 0.29 +0.0 2,226,860 + Pf1N1B4_1946 0.29 -0.7 2,226,860 + Pf1N1B4_1946 0.29 -1.2 2,227,001 + Pf1N1B4_1946 0.47 -0.7 2,227,001 + Pf1N1B4_1946 0.47 -0.5 2,227,001 + Pf1N1B4_1946 0.47 -0.2 2,227,001 + Pf1N1B4_1946 0.47 -0.6 2,227,110 + Pf1N1B4_1946 0.62 +0.8 2,227,110 + Pf1N1B4_1946 0.62 -1.6 2,227,113 + Pf1N1B4_1946 0.62 +0.5 2,227,121 + Pf1N1B4_1946 0.63 -0.2 2,227,121 + Pf1N1B4_1946 0.63 -1.2 2,227,137 + Pf1N1B4_1946 0.65 -1.4 2,227,137 + Pf1N1B4_1946 0.65 -1.4 2,227,137 + Pf1N1B4_1946 0.65 -1.0 2,227,309 + Pf1N1B4_1946 0.87 +0.6 2,227,318 + Pf1N1B4_1946 0.88 -0.2 2,227,372 + -1.2
Or see this region's nucleotide sequence