Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1946

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1945 and Pf1N1B4_1946 are separated by 204 nucleotidesPf1N1B4_1946 and Pf1N1B4_1947 are separated by 1 nucleotides Pf1N1B4_1945 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 2,225,060 to 2,226,427 _1945 Pf1N1B4_1946 - Transcriptional regulator of glmS gene, DeoR family, at 2,226,632 to 2,227,408 _1946 Pf1N1B4_1947 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 2,227,410 to 2,229,242 _1947 Position (kb) 2226 2227 2228Strain fitness (log2 ratio) -2 -1 0 1at 2226.430 kb on + strandat 2226.496 kb on - strandat 2226.860 kb on + strand, within Pf1N1B4_1946at 2226.860 kb on + strand, within Pf1N1B4_1946at 2226.860 kb on + strand, within Pf1N1B4_1946at 2227.001 kb on + strand, within Pf1N1B4_1946at 2227.001 kb on + strand, within Pf1N1B4_1946at 2227.001 kb on + strand, within Pf1N1B4_1946at 2227.001 kb on + strand, within Pf1N1B4_1946at 2227.110 kb on + strand, within Pf1N1B4_1946at 2227.110 kb on + strand, within Pf1N1B4_1946at 2227.113 kb on + strand, within Pf1N1B4_1946at 2227.121 kb on + strand, within Pf1N1B4_1946at 2227.121 kb on + strand, within Pf1N1B4_1946at 2227.137 kb on + strand, within Pf1N1B4_1946at 2227.137 kb on + strand, within Pf1N1B4_1946at 2227.137 kb on + strand, within Pf1N1B4_1946at 2227.309 kb on + strand, within Pf1N1B4_1946at 2227.318 kb on + strand, within Pf1N1B4_1946at 2227.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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2,226,430 + -1.8
2,226,496 - +0.2
2,226,860 + Pf1N1B4_1946 0.29 +0.0
2,226,860 + Pf1N1B4_1946 0.29 -0.7
2,226,860 + Pf1N1B4_1946 0.29 -1.2
2,227,001 + Pf1N1B4_1946 0.47 -0.7
2,227,001 + Pf1N1B4_1946 0.47 -0.5
2,227,001 + Pf1N1B4_1946 0.47 -0.2
2,227,001 + Pf1N1B4_1946 0.47 -0.6
2,227,110 + Pf1N1B4_1946 0.62 +0.8
2,227,110 + Pf1N1B4_1946 0.62 -1.6
2,227,113 + Pf1N1B4_1946 0.62 +0.5
2,227,121 + Pf1N1B4_1946 0.63 -0.2
2,227,121 + Pf1N1B4_1946 0.63 -1.2
2,227,137 + Pf1N1B4_1946 0.65 -1.4
2,227,137 + Pf1N1B4_1946 0.65 -1.4
2,227,137 + Pf1N1B4_1946 0.65 -1.0
2,227,309 + Pf1N1B4_1946 0.87 +0.6
2,227,318 + Pf1N1B4_1946 0.88 -0.2
2,227,372 + -1.2

Or see this region's nucleotide sequence