Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1001

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1000 and Pf1N1B4_1001 are separated by 56 nucleotidesPf1N1B4_1001 and Pf1N1B4_1002 are separated by 286 nucleotides Pf1N1B4_1000 - Inner membrane component of tripartite multidrug resistance system, at 1,133,055 to 1,135,343 _1000 Pf1N1B4_1001 - Outer membrane component of tripartite multidrug resistance system, at 1,135,400 to 1,136,899 _1001 Pf1N1B4_1002 - LysR family transcriptional regulator QseA, at 1,137,186 to 1,138,154 _1002 Position (kb) 1135 1136 1137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1134.480 kb on - strand, within Pf1N1B4_1000at 1134.685 kb on + strand, within Pf1N1B4_1000at 1134.685 kb on + strand, within Pf1N1B4_1000at 1134.686 kb on - strand, within Pf1N1B4_1000at 1134.686 kb on - strand, within Pf1N1B4_1000at 1134.686 kb on - strand, within Pf1N1B4_1000at 1134.848 kb on + strand, within Pf1N1B4_1000at 1134.849 kb on - strand, within Pf1N1B4_1000at 1134.862 kb on - strand, within Pf1N1B4_1000at 1135.062 kb on - strand, within Pf1N1B4_1000at 1135.162 kb on + strandat 1135.225 kb on + strandat 1135.225 kb on + strandat 1135.226 kb on - strandat 1135.588 kb on - strand, within Pf1N1B4_1001at 1135.588 kb on - strand, within Pf1N1B4_1001at 1135.629 kb on + strand, within Pf1N1B4_1001at 1135.629 kb on + strand, within Pf1N1B4_1001at 1135.629 kb on + strand, within Pf1N1B4_1001at 1135.629 kb on + strand, within Pf1N1B4_1001at 1135.629 kb on + strand, within Pf1N1B4_1001at 1135.629 kb on + strand, within Pf1N1B4_1001at 1135.630 kb on - strand, within Pf1N1B4_1001at 1135.630 kb on - strand, within Pf1N1B4_1001at 1135.630 kb on - strand, within Pf1N1B4_1001at 1135.630 kb on - strand, within Pf1N1B4_1001at 1135.746 kb on + strand, within Pf1N1B4_1001at 1135.746 kb on + strand, within Pf1N1B4_1001at 1135.747 kb on - strand, within Pf1N1B4_1001at 1135.747 kb on - strand, within Pf1N1B4_1001at 1135.747 kb on - strand, within Pf1N1B4_1001at 1135.768 kb on - strand, within Pf1N1B4_1001at 1135.848 kb on + strand, within Pf1N1B4_1001at 1135.848 kb on + strand, within Pf1N1B4_1001at 1135.848 kb on + strand, within Pf1N1B4_1001at 1135.848 kb on + strand, within Pf1N1B4_1001at 1135.849 kb on - strand, within Pf1N1B4_1001at 1135.849 kb on - strand, within Pf1N1B4_1001at 1135.902 kb on + strand, within Pf1N1B4_1001at 1135.903 kb on - strandat 1135.935 kb on + strand, within Pf1N1B4_1001at 1135.936 kb on - strand, within Pf1N1B4_1001at 1135.936 kb on - strand, within Pf1N1B4_1001at 1135.936 kb on - strand, within Pf1N1B4_1001at 1136.313 kb on + strand, within Pf1N1B4_1001at 1136.313 kb on + strand, within Pf1N1B4_1001at 1136.334 kb on + strandat 1136.334 kb on + strand, within Pf1N1B4_1001at 1136.334 kb on + strand, within Pf1N1B4_1001at 1136.334 kb on + strand, within Pf1N1B4_1001at 1136.335 kb on - strand, within Pf1N1B4_1001at 1136.335 kb on - strand, within Pf1N1B4_1001at 1136.335 kb on - strand, within Pf1N1B4_1001at 1136.335 kb on - strand, within Pf1N1B4_1001at 1136.457 kb on + strand, within Pf1N1B4_1001at 1136.457 kb on + strand, within Pf1N1B4_1001at 1136.458 kb on - strand, within Pf1N1B4_1001at 1136.520 kb on + strand, within Pf1N1B4_1001at 1136.520 kb on + strand, within Pf1N1B4_1001at 1136.520 kb on + strand, within Pf1N1B4_1001at 1136.520 kb on + strand, within Pf1N1B4_1001at 1136.520 kb on + strand, within Pf1N1B4_1001at 1136.521 kb on - strand, within Pf1N1B4_1001at 1136.703 kb on + strand, within Pf1N1B4_1001at 1136.812 kb on + strandat 1136.813 kb on - strandat 1136.813 kb on - strandat 1136.813 kb on - strandat 1136.918 kb on + strandat 1136.933 kb on + strandat 1136.963 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.019 kb on + strandat 1137.020 kb on - strandat 1137.040 kb on + strandat 1137.062 kb on + strandat 1137.124 kb on - strandat 1137.219 kb on + strandat 1137.219 kb on + strandat 1137.219 kb on + strandat 1137.220 kb on - strandat 1137.379 kb on - strand, within Pf1N1B4_1002at 1137.382 kb on + strand, within Pf1N1B4_1002at 1137.382 kb on + strand, within Pf1N1B4_1002at 1137.382 kb on + strand, within Pf1N1B4_1002at 1137.382 kb on + strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.383 kb on - strand, within Pf1N1B4_1002at 1137.409 kb on - strandat 1137.476 kb on + strand, within Pf1N1B4_1002at 1137.477 kb on - strand, within Pf1N1B4_1002at 1137.601 kb on - strand, within Pf1N1B4_1002at 1137.672 kb on + strand, within Pf1N1B4_1002at 1137.672 kb on + strand, within Pf1N1B4_1002at 1137.672 kb on + strand, within Pf1N1B4_1002at 1137.672 kb on + strandat 1137.673 kb on - strand, within Pf1N1B4_1002at 1137.673 kb on - strand, within Pf1N1B4_1002at 1137.673 kb on - strand, within Pf1N1B4_1002at 1137.699 kb on + strand, within Pf1N1B4_1002at 1137.699 kb on + strand, within Pf1N1B4_1002at 1137.699 kb on + strand, within Pf1N1B4_1002at 1137.700 kb on - strand, within Pf1N1B4_1002at 1137.703 kb on + strand, within Pf1N1B4_1002at 1137.703 kb on + strand, within Pf1N1B4_1002at 1137.703 kb on + strand, within Pf1N1B4_1002at 1137.703 kb on + strand, within Pf1N1B4_1002at 1137.703 kb on + strand, within Pf1N1B4_1002at 1137.704 kb on - strand, within Pf1N1B4_1002

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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1,134,480 - Pf1N1B4_1000 0.62 -0.5
1,134,685 + Pf1N1B4_1000 0.71 -1.0
1,134,685 + Pf1N1B4_1000 0.71 -0.9
1,134,686 - Pf1N1B4_1000 0.71 +0.4
1,134,686 - Pf1N1B4_1000 0.71 +0.7
1,134,686 - Pf1N1B4_1000 0.71 -0.9
1,134,848 + Pf1N1B4_1000 0.78 -0.2
1,134,849 - Pf1N1B4_1000 0.78 +1.4
1,134,862 - Pf1N1B4_1000 0.79 +0.0
1,135,062 - Pf1N1B4_1000 0.88 +1.2
1,135,162 + +0.4
1,135,225 + +1.4
1,135,225 + -0.2
1,135,226 - -0.2
1,135,588 - Pf1N1B4_1001 0.13 +1.4
1,135,588 - Pf1N1B4_1001 0.13 +0.4
1,135,629 + Pf1N1B4_1001 0.15 -0.5
1,135,629 + Pf1N1B4_1001 0.15 -0.6
1,135,629 + Pf1N1B4_1001 0.15 -0.9
1,135,629 + Pf1N1B4_1001 0.15 -1.0
1,135,629 + Pf1N1B4_1001 0.15 +0.4
1,135,629 + Pf1N1B4_1001 0.15 -1.6
1,135,630 - Pf1N1B4_1001 0.15 -0.0
1,135,630 - Pf1N1B4_1001 0.15 -0.6
1,135,630 - Pf1N1B4_1001 0.15 +0.7
1,135,630 - Pf1N1B4_1001 0.15 -1.5
1,135,746 + Pf1N1B4_1001 0.23 -1.7
1,135,746 + Pf1N1B4_1001 0.23 -1.4
1,135,747 - Pf1N1B4_1001 0.23 +0.7
1,135,747 - Pf1N1B4_1001 0.23 -0.9
1,135,747 - Pf1N1B4_1001 0.23 -1.1
1,135,768 - Pf1N1B4_1001 0.25 -0.5
1,135,848 + Pf1N1B4_1001 0.30 -1.2
1,135,848 + Pf1N1B4_1001 0.30 -0.2
1,135,848 + Pf1N1B4_1001 0.30 -0.2
1,135,848 + Pf1N1B4_1001 0.30 -2.4
1,135,849 - Pf1N1B4_1001 0.30 +0.4
1,135,849 - Pf1N1B4_1001 0.30 +0.4
1,135,902 + Pf1N1B4_1001 0.33 -0.4
1,135,903 - +0.4
1,135,935 + Pf1N1B4_1001 0.36 -0.2
1,135,936 - Pf1N1B4_1001 0.36 -0.6
1,135,936 - Pf1N1B4_1001 0.36 -0.9
1,135,936 - Pf1N1B4_1001 0.36 +0.2
1,136,313 + Pf1N1B4_1001 0.61 -3.3
1,136,313 + Pf1N1B4_1001 0.61 -1.2
1,136,334 + -1.4
1,136,334 + Pf1N1B4_1001 0.62 -0.2
1,136,334 + Pf1N1B4_1001 0.62 +0.4
1,136,334 + Pf1N1B4_1001 0.62 -0.9
1,136,335 - Pf1N1B4_1001 0.62 -0.2
1,136,335 - Pf1N1B4_1001 0.62 -0.7
1,136,335 - Pf1N1B4_1001 0.62 -1.2
1,136,335 - Pf1N1B4_1001 0.62 -0.2
1,136,457 + Pf1N1B4_1001 0.70 +0.4
1,136,457 + Pf1N1B4_1001 0.70 -2.3
1,136,458 - Pf1N1B4_1001 0.71 -0.2
1,136,520 + Pf1N1B4_1001 0.75 -0.4
1,136,520 + Pf1N1B4_1001 0.75 -1.7
1,136,520 + Pf1N1B4_1001 0.75 -0.7
1,136,520 + Pf1N1B4_1001 0.75 -1.6
1,136,520 + Pf1N1B4_1001 0.75 +1.0
1,136,521 - Pf1N1B4_1001 0.75 +0.1
1,136,703 + Pf1N1B4_1001 0.87 -2.0
1,136,812 + -1.7
1,136,813 - -0.3
1,136,813 - -1.2
1,136,813 - +0.3
1,136,918 + -1.6
1,136,933 + -1.6
1,136,963 + -1.2
1,137,019 + -1.7
1,137,019 + -0.7
1,137,019 + -2.5
1,137,019 + -2.7
1,137,019 + -2.7
1,137,019 + -0.9
1,137,019 + -0.9
1,137,019 + -0.9
1,137,020 - +0.2
1,137,040 + -2.4
1,137,062 + -3.0
1,137,124 - +1.0
1,137,219 + +0.4
1,137,219 + -1.4
1,137,219 + +0.7
1,137,220 - -1.4
1,137,379 - Pf1N1B4_1002 0.20 -0.2
1,137,382 + Pf1N1B4_1002 0.20 +0.4
1,137,382 + Pf1N1B4_1002 0.20 +1.1
1,137,382 + Pf1N1B4_1002 0.20 +0.4
1,137,382 + Pf1N1B4_1002 0.20 -1.7
1,137,383 - Pf1N1B4_1002 0.20 +0.4
1,137,383 - Pf1N1B4_1002 0.20 -1.6
1,137,383 - Pf1N1B4_1002 0.20 -0.6
1,137,383 - Pf1N1B4_1002 0.20 +2.2
1,137,383 - Pf1N1B4_1002 0.20 -2.2
1,137,383 - Pf1N1B4_1002 0.20 +0.7
1,137,383 - Pf1N1B4_1002 0.20 -1.2
1,137,383 - Pf1N1B4_1002 0.20 -0.9
1,137,409 - -0.9
1,137,476 + Pf1N1B4_1002 0.30 +0.8
1,137,477 - Pf1N1B4_1002 0.30 +0.8
1,137,601 - Pf1N1B4_1002 0.43 +0.7
1,137,672 + Pf1N1B4_1002 0.50 +2.2
1,137,672 + Pf1N1B4_1002 0.50 -0.5
1,137,672 + Pf1N1B4_1002 0.50 -1.0
1,137,672 + +0.4
1,137,673 - Pf1N1B4_1002 0.50 +1.7
1,137,673 - Pf1N1B4_1002 0.50 +0.2
1,137,673 - Pf1N1B4_1002 0.50 +0.2
1,137,699 + Pf1N1B4_1002 0.53 -1.7
1,137,699 + Pf1N1B4_1002 0.53 +0.9
1,137,699 + Pf1N1B4_1002 0.53 -1.4
1,137,700 - Pf1N1B4_1002 0.53 -0.2
1,137,703 + Pf1N1B4_1002 0.53 +0.8
1,137,703 + Pf1N1B4_1002 0.53 -0.6
1,137,703 + Pf1N1B4_1002 0.53 +0.3
1,137,703 + Pf1N1B4_1002 0.53 -0.2
1,137,703 + Pf1N1B4_1002 0.53 +0.4
1,137,704 - Pf1N1B4_1002 0.53 +0.2

Or see this region's nucleotide sequence