Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15665

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
3,452,588	-				+0.7
3,452,603	+				-0.8
3,452,603	+				-0.5
3,452,604	-				+0.5
3,452,604	-				+0.4
3,452,667	+		LRK54_RS15655	0.13	-0.1
3,452,667	+		LRK54_RS15655	0.13	-2.2
3,452,668	-		LRK54_RS15655	0.14	-1.6
3,452,668	-		LRK54_RS15655	0.14	+0.3
3,452,668	-		LRK54_RS15655	0.14	-0.3
3,452,668	-		LRK54_RS15655	0.14	-0.6
3,452,668	-		LRK54_RS15655	0.14	-0.5
3,452,668	-		LRK54_RS15655	0.14	-1.0
3,452,688	+		LRK54_RS15655	0.20	-1.2
3,452,688	+		LRK54_RS15655	0.20	+0.8
3,452,689	-		LRK54_RS15655	0.21	-0.2
3,452,689	-		LRK54_RS15655	0.21	-0.1
3,453,064	+		LRK54_RS15660	0.19	+0.4
3,453,064	+		LRK54_RS15660	0.19	-0.2
3,453,064	+		LRK54_RS15660	0.19	-0.5
3,453,064	+		LRK54_RS15660	0.19	-0.6
3,453,064	+		LRK54_RS15660	0.19	+0.8
3,453,064	+		LRK54_RS15660	0.19	+0.7
3,453,064	+		LRK54_RS15660	0.19	-0.6
3,453,064	+		LRK54_RS15660	0.19	+1.5
3,453,064	+		LRK54_RS15660	0.19	-1.1
3,453,064	+		LRK54_RS15660	0.19	+0.2
3,453,064	+		LRK54_RS15660	0.19	+1.0
3,453,064	+		LRK54_RS15660	0.19	+1.6
3,453,064	+		LRK54_RS15660	0.19	-1.3
3,453,064	+		LRK54_RS15660	0.19	-0.2
3,453,065	-		LRK54_RS15660	0.19	-0.1
3,453,065	-		LRK54_RS15660	0.19	-0.8
3,453,065	-		LRK54_RS15660	0.19	+0.1
3,453,065	-		LRK54_RS15660	0.19	-0.4
3,453,065	-		LRK54_RS15660	0.19	+0.6
3,453,065	-		LRK54_RS15660	0.19	-0.4
3,453,065	-		LRK54_RS15660	0.19	-1.2
3,453,065	-		LRK54_RS15660	0.19	-0.9
3,453,065	-		LRK54_RS15660	0.19	-0.8
3,453,065	-		LRK54_RS15660	0.19	-1.0
3,453,065	-		LRK54_RS15660	0.19	-0.5
3,453,065	-		LRK54_RS15660	0.19	-0.0
3,453,065	-		LRK54_RS15660	0.19	-1.7
3,453,065	-		LRK54_RS15660	0.19	+1.1
3,453,065	-		LRK54_RS15660	0.19	-0.3
3,453,065	-		LRK54_RS15660	0.19	+1.0
3,453,065	-		LRK54_RS15660	0.19	-0.2
3,453,065	-		LRK54_RS15660	0.19	+0.3
3,453,065	-		LRK54_RS15660	0.19	+1.3
3,453,097	+		LRK54_RS15660	0.25	-0.8
3,453,097	+		LRK54_RS15660	0.25	-0.3
3,453,097	+		LRK54_RS15660	0.25	+0.1
3,453,097	+		LRK54_RS15660	0.25	+0.0
3,453,097	+		LRK54_RS15660	0.25	-1.0
3,453,098	-		LRK54_RS15660	0.25	-0.9
3,453,098	-		LRK54_RS15660	0.25	-0.0
3,453,098	-		LRK54_RS15660	0.25	+0.9
3,453,098	-		LRK54_RS15660	0.25	-0.0
3,453,098	-		LRK54_RS15660	0.25	+0.2
3,453,098	-		LRK54_RS15660	0.25	-0.6
3,453,098	-		LRK54_RS15660	0.25	-2.1
3,453,098	-		LRK54_RS15660	0.25	+0.6
3,453,098	-		LRK54_RS15660	0.25	-1.2
3,453,098	-		LRK54_RS15660	0.25	-0.7
3,453,138	+		LRK54_RS15660	0.32	-1.9
3,453,138	+		LRK54_RS15660	0.32	+0.3
3,453,138	+		LRK54_RS15660	0.32	-0.9
3,453,138	+		LRK54_RS15660	0.32	+0.3
3,453,139	-		LRK54_RS15660	0.32	-0.5
3,453,139	-		LRK54_RS15660	0.32	+0.7
3,453,139	-		LRK54_RS15660	0.32	-1.7
3,453,408	+		LRK54_RS15660	0.78	+0.9
3,453,408	+		LRK54_RS15660	0.78	-1.2
3,453,408	+		LRK54_RS15660	0.78	+1.9
3,453,408	+		LRK54_RS15660	0.78	-0.6
3,453,408	+		LRK54_RS15660	0.78	+0.1
3,453,409	-		LRK54_RS15660	0.78	-0.0
3,453,409	-		LRK54_RS15660	0.78	+0.1
3,453,409	-		LRK54_RS15660	0.78	+0.3
3,453,409	-		LRK54_RS15660	0.78	-0.7
3,453,642	+		LRK54_RS15665	0.18	+0.8
3,453,643	-		LRK54_RS15665	0.18	-0.4
3,453,643	-		LRK54_RS15665	0.18	-0.6
3,453,915	+		LRK54_RS15665	0.63	-0.0
3,453,915	+		LRK54_RS15665	0.63	-0.4
3,453,915	+		LRK54_RS15665	0.63	-0.7
3,453,916	-		LRK54_RS15665	0.63	+0.6
3,453,916	-		LRK54_RS15665	0.63	-1.2
3,453,916	-		LRK54_RS15665	0.63	+1.6
3,453,916	-		LRK54_RS15665	0.63	+0.8
3,453,916	-		LRK54_RS15665	0.63	+0.8
3,454,023	-		LRK54_RS15665	0.80	-0.1
3,454,023	-		LRK54_RS15665	0.80	+0.4
3,454,117	+				-0.0
3,454,240	+				+0.2
3,454,240	+				-0.7
3,454,240	+				-0.2
3,454,240	+				-2.2
3,454,241	-				-1.0
3,454,300	+		LRK54_RS15670	0.12	-1.2
3,454,300	+		LRK54_RS15670	0.12	-0.4
3,454,300	+		LRK54_RS15670	0.12	+0.7
3,454,301	-		LRK54_RS15670	0.12	-0.7
3,454,301	-		LRK54_RS15670	0.12	+1.9
3,454,301	-		LRK54_RS15670	0.12	+1.0
3,454,339	+		LRK54_RS15670	0.15	-0.1
3,454,339	+		LRK54_RS15670	0.15	-0.4
3,454,339	+		LRK54_RS15670	0.15	-1.0
3,454,340	-		LRK54_RS15670	0.15	-2.0
3,454,340	-		LRK54_RS15670	0.15	+1.1
3,454,340	-		LRK54_RS15670	0.15	-0.0
3,454,408	+		LRK54_RS15670	0.20	-1.0
3,454,408	+		LRK54_RS15670	0.20	-0.7
3,454,408	+		LRK54_RS15670	0.20	-1.0
3,454,408	+		LRK54_RS15670	0.20	+1.3
3,454,408	+		LRK54_RS15670	0.20	+0.2
3,454,408	+		LRK54_RS15670	0.20	-0.0
3,454,408	+		LRK54_RS15670	0.20	+0.6
3,454,409	-		LRK54_RS15670	0.20	-1.7
3,454,409	-		LRK54_RS15670	0.20	+0.5
3,454,409	-		LRK54_RS15670	0.20	+1.3
3,454,409	-		LRK54_RS15670	0.20	-0.1
3,454,409	-		LRK54_RS15670	0.20	-0.1
3,454,409	-		LRK54_RS15670	0.20	+1.5
3,454,409	-		LRK54_RS15670	0.20	+0.3
3,454,409	-		LRK54_RS15670	0.20	-1.2
3,454,450	+		LRK54_RS15670	0.22	-1.0
3,454,450	+		LRK54_RS15670	0.22	+1.7
3,454,450	+		LRK54_RS15670	0.22	-0.6
3,454,450	+		LRK54_RS15670	0.22	+0.2
3,454,450	+		LRK54_RS15670	0.22	+0.8
3,454,451	-		LRK54_RS15670	0.23	+0.6
3,454,451	-		LRK54_RS15670	0.23	+0.8
3,454,451	-		LRK54_RS15670	0.23	-1.7
3,454,451	-		LRK54_RS15670	0.23	+0.2
3,454,451	-		LRK54_RS15670	0.23	-0.3
3,454,451	-		LRK54_RS15670	0.23	+0.6
3,454,451	-		LRK54_RS15670	0.23	+1.9
3,454,451	-		LRK54_RS15670	0.23	-0.6
3,454,627	+		LRK54_RS15670	0.34	-1.7
3,454,628	-		LRK54_RS15670	0.34	-0.6
3,454,628	-		LRK54_RS15670	0.34	-1.9
3,454,628	-		LRK54_RS15670	0.34	-0.5
3,454,663	+		LRK54_RS15670	0.37	+0.2
3,454,663	+		LRK54_RS15670	0.37	-0.6
3,454,663	+		LRK54_RS15670	0.37	-0.8
3,454,663	+		LRK54_RS15670	0.37	-1.6
3,454,663	+		LRK54_RS15670	0.37	-0.3
3,454,663	+		LRK54_RS15670	0.37	-1.9
3,454,663	+		LRK54_RS15670	0.37	+0.4
3,454,663	+		LRK54_RS15670	0.37	+0.8
3,454,663	+		LRK54_RS15670	0.37	+0.8
3,454,663	+		LRK54_RS15670	0.37	-0.4
3,454,664	-		LRK54_RS15670	0.37	+1.1
3,454,664	-		LRK54_RS15670	0.37	-0.3
3,454,664	-		LRK54_RS15670	0.37	-0.8
3,454,664	-		LRK54_RS15670	0.37	+1.7
3,454,664	-		LRK54_RS15670	0.37	-1.2
3,454,664	-		LRK54_RS15670	0.37	-1.6
3,454,664	-		LRK54_RS15670	0.37	-0.8
3,454,664	-		LRK54_RS15670	0.37	+2.5
3,454,664	-		LRK54_RS15670	0.37	-0.7
3,454,664	-		LRK54_RS15670	0.37	-0.4
3,454,664	-		LRK54_RS15670	0.37	-0.5
3,454,664	-		LRK54_RS15670	0.37	-1.1
3,454,708	+		LRK54_RS15670	0.40	-1.1
3,454,708	+		LRK54_RS15670	0.40	-1.1
3,454,708	+		LRK54_RS15670	0.40	-0.9
3,454,708	+		LRK54_RS15670	0.40	-1.2
3,454,709	-		LRK54_RS15670	0.40	-0.5
3,454,709	-		LRK54_RS15670	0.40	+0.4
3,454,709	-		LRK54_RS15670	0.40	+0.0
3,454,709	-		LRK54_RS15670	0.40	-0.6
3,454,709	-		LRK54_RS15670	0.40	-0.1
3,454,709	-		LRK54_RS15670	0.40	-0.9
3,454,709	-		LRK54_RS15670	0.40	-0.0
3,454,709	-		LRK54_RS15670	0.40	-0.4
3,454,709	-		LRK54_RS15670	0.40	-0.5
3,454,749	+		LRK54_RS15670	0.43	-1.1
3,454,749	+		LRK54_RS15670	0.43	-2.8
3,454,749	+		LRK54_RS15670	0.43	-0.9
3,454,749	+		LRK54_RS15670	0.43	-0.8
3,454,749	+		LRK54_RS15670	0.43	-1.2
3,454,750	-		LRK54_RS15670	0.43	-0.8
3,454,750	-		LRK54_RS15670	0.43	-1.2
3,454,750	-		LRK54_RS15670	0.43	+0.6
3,454,750	-		LRK54_RS15670	0.43	+0.3
3,454,750	-		LRK54_RS15670	0.43	+0.3
3,454,811	-		LRK54_RS15670	0.47	-1.6
3,454,811	-		LRK54_RS15670	0.47	-0.2
3,454,828	+		LRK54_RS15670	0.48	-0.2
3,454,828	+		LRK54_RS15670	0.48	-1.1
3,454,828	+		LRK54_RS15670	0.48	+1.9
3,454,828	+		LRK54_RS15670	0.48	+1.2
3,454,829	-		LRK54_RS15670	0.48	+0.5
3,454,829	-		LRK54_RS15670	0.48	-0.2
3,454,829	-		LRK54_RS15670	0.48	-1.5
3,454,829	-		LRK54_RS15670	0.48	+0.3
3,454,829	-		LRK54_RS15670	0.48	+1.0
3,454,849	+		LRK54_RS15670	0.49	-0.6
3,454,849	+		LRK54_RS15670	0.49	+2.1
3,454,849	+		LRK54_RS15670	0.49	-0.2
3,454,849	+		LRK54_RS15670	0.49	+0.7
3,454,849	+		LRK54_RS15670	0.49	+0.1
3,454,849	+		LRK54_RS15670	0.49	-0.5
3,454,849	+		LRK54_RS15670	0.49	+0.9
3,454,849	+		LRK54_RS15670	0.49	+0.6
3,454,849	+		LRK54_RS15670	0.49	-0.2
3,454,849	+		LRK54_RS15670	0.49	-0.8
3,454,849	+		LRK54_RS15670	0.49	+0.4
3,454,849	+		LRK54_RS15670	0.49	-1.1
3,454,849	+		LRK54_RS15670	0.49	-0.5
3,454,849	+		LRK54_RS15670	0.49	+1.4
3,454,849	+		LRK54_RS15670	0.49	+1.9
3,454,849	+		LRK54_RS15670	0.49	+1.5
3,454,849	+		LRK54_RS15670	0.49	-1.2
3,454,849	+		LRK54_RS15670	0.49	+1.4
3,454,849	+		LRK54_RS15670	0.49	-1.6
3,454,849	+		LRK54_RS15670	0.49	+0.4
3,454,849	+		LRK54_RS15670	0.49	+0.7
3,454,849	+		LRK54_RS15670	0.49	-0.5
3,454,849	+		LRK54_RS15670	0.49	+0.2
3,454,849	+		LRK54_RS15670	0.49	+5.9
3,454,850	-		LRK54_RS15670	0.49	+0.8
3,454,850	-		LRK54_RS15670	0.49	-0.9
3,454,850	-		LRK54_RS15670	0.49	-0.6
3,454,850	-		LRK54_RS15670	0.49	-0.5
3,454,850	-		LRK54_RS15670	0.49	+0.1
3,454,850	-		LRK54_RS15670	0.49	-0.7
3,454,850	-		LRK54_RS15670	0.49	-0.6
3,454,850	-		LRK54_RS15670	0.49	+0.1
3,454,850	-		LRK54_RS15670	0.49	-2.0
3,454,850	-		LRK54_RS15670	0.49	+0.1
3,454,850	-		LRK54_RS15670	0.49	+0.6
3,454,850	-		LRK54_RS15670	0.49	+0.1
3,454,885	+		LRK54_RS15670	0.52	+0.3
3,454,885	+		LRK54_RS15670	0.52	+2.1
3,454,885	+		LRK54_RS15670	0.52	+1.0
3,454,885	+		LRK54_RS15670	0.52	+0.3
3,454,885	+		LRK54_RS15670	0.52	-0.5
3,454,885	+		LRK54_RS15670	0.52	-1.5
3,454,885	+		LRK54_RS15670	0.52	-1.2
3,454,885	+		LRK54_RS15670	0.52	-0.9
3,454,885	+		LRK54_RS15670	0.52	-0.1
3,454,886	-		LRK54_RS15670	0.52	+0.4
3,454,886	-		LRK54_RS15670	0.52	-0.2
3,454,886	-		LRK54_RS15670	0.52	-0.1
3,454,886	-		LRK54_RS15670	0.52	-0.1
3,454,886	-		LRK54_RS15670	0.52	-1.8
3,454,886	-		LRK54_RS15670	0.52	-0.5
3,454,886	-		LRK54_RS15670	0.52	-0.0
3,454,934	-		LRK54_RS15670	0.55	+0.1
3,454,934	-		LRK54_RS15670	0.55	-0.8
3,454,934	-		LRK54_RS15670	0.55	+1.1
3,454,934	-		LRK54_RS15670	0.55	+0.5
3,454,962	+		LRK54_RS15670	0.57	-0.8
3,455,128	+		LRK54_RS15670	0.68	+0.7
3,455,128	+		LRK54_RS15670	0.68	+0.5
3,455,128	+		LRK54_RS15670	0.68	-0.1
3,455,129	-		LRK54_RS15670	0.68	-0.1
3,455,129	-		LRK54_RS15670	0.68	+0.8
3,455,129	-		LRK54_RS15670	0.68	+1.4
3,455,129	-		LRK54_RS15670	0.68	+1.6