Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13515

Experiment: R2A with Selective_ion_mix_1 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS13510 and LRK54_RS13515 overlap by 4 nucleotidesLRK54_RS13515 and LRK54_RS13520 are separated by 91 nucleotides LRK54_RS13510: LRK54_RS13510 - flagellar protein export ATPase FliI, at 3,025,818 to 3,027,185 _RS13510 LRK54_RS13515: LRK54_RS13515 - flagellar export protein FliJ, at 3,027,182 to 3,027,607 _RS13515 LRK54_RS13520: LRK54_RS13520 - flagellar hook-length control protein FliK, at 3,027,699 to 3,028,799 _RS13520 Position (kb) 3027 3028Strain fitness (log2 ratio) -2 -1 0 1at 3026.397 kb on + strand, within LRK54_RS13510at 3026.397 kb on + strand, within LRK54_RS13510at 3026.397 kb on + strand, within LRK54_RS13510at 3026.398 kb on - strand, within LRK54_RS13510at 3026.398 kb on - strand, within LRK54_RS13510at 3026.559 kb on + strand, within LRK54_RS13510at 3026.559 kb on + strand, within LRK54_RS13510at 3026.781 kb on + strand, within LRK54_RS13510at 3026.781 kb on + strand, within LRK54_RS13510at 3026.781 kb on + strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.782 kb on - strand, within LRK54_RS13510at 3026.858 kb on + strand, within LRK54_RS13510at 3026.858 kb on + strand, within LRK54_RS13510at 3026.859 kb on - strand, within LRK54_RS13510at 3026.991 kb on + strand, within LRK54_RS13510at 3026.991 kb on + strand, within LRK54_RS13510at 3026.991 kb on + strand, within LRK54_RS13510at 3026.991 kb on + strand, within LRK54_RS13510at 3026.991 kb on + strand, within LRK54_RS13510at 3026.991 kb on + strand, within LRK54_RS13510at 3026.992 kb on - strand, within LRK54_RS13510at 3026.992 kb on - strand, within LRK54_RS13510at 3026.992 kb on - strand, within LRK54_RS13510at 3027.036 kb on + strand, within LRK54_RS13510at 3027.037 kb on - strand, within LRK54_RS13510at 3027.329 kb on + strand, within LRK54_RS13515at 3027.330 kb on - strand, within LRK54_RS13515at 3027.590 kb on + strandat 3027.590 kb on + strandat 3027.591 kb on - strandat 3027.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Selective_ion_mix_1 1 X
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3,026,397 + LRK54_RS13510 0.42 -0.8
3,026,397 + LRK54_RS13510 0.42 +0.3
3,026,397 + LRK54_RS13510 0.42 -0.7
3,026,398 - LRK54_RS13510 0.42 -0.6
3,026,398 - LRK54_RS13510 0.42 -1.6
3,026,559 + LRK54_RS13510 0.54 +0.5
3,026,559 + LRK54_RS13510 0.54 -0.7
3,026,781 + LRK54_RS13510 0.70 +1.5
3,026,781 + LRK54_RS13510 0.70 -1.4
3,026,781 + LRK54_RS13510 0.70 -0.5
3,026,782 - LRK54_RS13510 0.70 +0.2
3,026,782 - LRK54_RS13510 0.70 +1.1
3,026,782 - LRK54_RS13510 0.70 +0.2
3,026,782 - LRK54_RS13510 0.70 +0.6
3,026,782 - LRK54_RS13510 0.70 -1.2
3,026,782 - LRK54_RS13510 0.70 +0.8
3,026,782 - LRK54_RS13510 0.70 +0.9
3,026,782 - LRK54_RS13510 0.70 -0.7
3,026,782 - LRK54_RS13510 0.70 -0.9
3,026,782 - LRK54_RS13510 0.70 +1.3
3,026,782 - LRK54_RS13510 0.70 +1.1
3,026,782 - LRK54_RS13510 0.70 -0.9
3,026,782 - LRK54_RS13510 0.70 +0.0
3,026,858 + LRK54_RS13510 0.76 +0.9
3,026,858 + LRK54_RS13510 0.76 -0.8
3,026,859 - LRK54_RS13510 0.76 -2.1
3,026,991 + LRK54_RS13510 0.86 +1.1
3,026,991 + LRK54_RS13510 0.86 -0.2
3,026,991 + LRK54_RS13510 0.86 -0.7
3,026,991 + LRK54_RS13510 0.86 -0.6
3,026,991 + LRK54_RS13510 0.86 +0.1
3,026,991 + LRK54_RS13510 0.86 +0.4
3,026,992 - LRK54_RS13510 0.86 -0.1
3,026,992 - LRK54_RS13510 0.86 -0.7
3,026,992 - LRK54_RS13510 0.86 -0.4
3,027,036 + LRK54_RS13510 0.89 -0.4
3,027,037 - LRK54_RS13510 0.89 -2.0
3,027,329 + LRK54_RS13515 0.35 -0.1
3,027,330 - LRK54_RS13515 0.35 -0.9
3,027,590 + -0.2
3,027,590 + -0.2
3,027,591 - +0.7
3,027,591 - -2.4

Or see this region's nucleotide sequence