Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11210

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,489,688	+		LRK54_RS11205	0.35	-0.2
2,489,688	+		LRK54_RS11205	0.35	-0.6
2,489,688	+		LRK54_RS11205	0.35	+0.3
2,489,688	+		LRK54_RS11205	0.35	-1.0
2,489,689	-		LRK54_RS11205	0.35	-0.9
2,489,689	-		LRK54_RS11205	0.35	+1.8
2,489,778	+		LRK54_RS11205	0.42	-1.2
2,489,778	+		LRK54_RS11205	0.42	+1.1
2,489,778	+		LRK54_RS11205	0.42	-0.2
2,489,778	+		LRK54_RS11205	0.42	-0.5
2,489,779	-		LRK54_RS11205	0.42	-0.0
2,489,779	-		LRK54_RS11205	0.42	-0.0
2,489,779	-		LRK54_RS11205	0.42	+0.1
2,489,784	+		LRK54_RS11205	0.43	-0.8
2,489,784	+		LRK54_RS11205	0.43	+0.2
2,489,784	+		LRK54_RS11205	0.43	+1.2
2,489,784	+		LRK54_RS11205	0.43	-0.4
2,489,785	-		LRK54_RS11205	0.43	-0.4
2,489,785	-		LRK54_RS11205	0.43	-0.8
2,489,802	+		LRK54_RS11205	0.44	+0.7
2,489,802	+		LRK54_RS11205	0.44	-1.0
2,489,802	+		LRK54_RS11205	0.44	+1.8
2,489,802	+		LRK54_RS11205	0.44	-0.1
2,489,802	+		LRK54_RS11205	0.44	+1.0
2,489,802	+		LRK54_RS11205	0.44	+0.4
2,489,802	+		LRK54_RS11205	0.44	-0.6
2,489,802	+		LRK54_RS11205	0.44	-0.4
2,489,802	+		LRK54_RS11205	0.44	-1.0
2,489,802	+		LRK54_RS11205	0.44	-2.1
2,489,803	-		LRK54_RS11205	0.44	+0.1
2,489,803	-		LRK54_RS11205	0.44	-1.9
2,489,803	-		LRK54_RS11205	0.44	+0.3
2,489,803	-		LRK54_RS11205	0.44	-0.6
2,489,817	+		LRK54_RS11205	0.45	-2.0
2,489,817	+		LRK54_RS11205	0.45	-0.9
2,489,817	+		LRK54_RS11205	0.45	-1.0
2,489,817	+		LRK54_RS11205	0.45	+2.1
2,489,818	-		LRK54_RS11205	0.45	+0.4
2,489,818	-		LRK54_RS11205	0.45	-0.4
2,489,818	-		LRK54_RS11205	0.45	+1.8
2,490,000	+		LRK54_RS11205	0.61	-0.7
2,490,000	+		LRK54_RS11205	0.61	-0.2
2,490,000	+		LRK54_RS11205	0.61	+0.9
2,490,000	+		LRK54_RS11205	0.61	+1.4
2,490,000	+		LRK54_RS11205	0.61	-2.0
2,490,000	+		LRK54_RS11205	0.61	-0.9
2,490,000	+		LRK54_RS11205	0.61	+0.5
2,490,000	+		LRK54_RS11205	0.61	-0.7
2,490,001	-		LRK54_RS11205	0.61	-1.3
2,490,001	-		LRK54_RS11205	0.61	+1.1
2,490,001	-		LRK54_RS11205	0.61	-2.4
2,490,012	+		LRK54_RS11205	0.62	+0.7
2,490,012	+		LRK54_RS11205	0.62	+0.1
2,490,013	-		LRK54_RS11205	0.62	-1.5
2,490,013	-		LRK54_RS11205	0.62	-0.2
2,490,013	-		LRK54_RS11205	0.62	-0.8
2,490,013	-		LRK54_RS11205	0.62	-0.1
2,490,013	-		LRK54_RS11205	0.62	-1.3
2,490,013	-		LRK54_RS11205	0.62	+0.7
2,490,013	-		LRK54_RS11205	0.62	+0.4
2,490,021	+		LRK54_RS11205	0.62	+0.8
2,490,021	+		LRK54_RS11205	0.62	-0.2
2,490,021	+		LRK54_RS11205	0.62	-0.5
2,490,021	+		LRK54_RS11205	0.62	+0.4
2,490,021	+		LRK54_RS11205	0.62	+0.5
2,490,021	+		LRK54_RS11205	0.62	+0.4
2,490,021	+		LRK54_RS11205	0.62	-0.2
2,490,021	+		LRK54_RS11205	0.62	-0.6
2,490,021	+		LRK54_RS11205	0.62	-1.0
2,490,021	+		LRK54_RS11205	0.62	-1.2
2,490,021	+		LRK54_RS11205	0.62	-0.2
2,490,021	+		LRK54_RS11205	0.62	-0.2
2,490,022	-		LRK54_RS11205	0.62	+1.9
2,490,022	-		LRK54_RS11205	0.62	+1.1
2,490,022	-		LRK54_RS11205	0.62	-0.6
2,490,022	-		LRK54_RS11205	0.62	-0.4
2,490,022	-		LRK54_RS11205	0.62	-1.5
2,490,022	-		LRK54_RS11205	0.62	+0.2
2,490,022	-		LRK54_RS11205	0.62	+0.2
2,490,022	-		LRK54_RS11205	0.62	+0.7
2,490,022	-		LRK54_RS11205	0.62	+0.7
2,490,022	-		LRK54_RS11205	0.62	+1.8
2,490,022	-		LRK54_RS11205	0.62	-0.2
2,490,022	-		LRK54_RS11205	0.62	-0.0
2,490,048	+		LRK54_RS11205	0.65	+0.1
2,490,048	+		LRK54_RS11205	0.65	-0.9
2,490,048	+		LRK54_RS11205	0.65	-0.4
2,490,048	+		LRK54_RS11205	0.65	-0.3
2,490,049	-		LRK54_RS11205	0.65	-1.0
2,490,049	-		LRK54_RS11205	0.65	+1.0
2,490,096	+		LRK54_RS11205	0.69	-0.3
2,490,096	+		LRK54_RS11205	0.69	-0.8
2,490,096	+		LRK54_RS11205	0.69	-1.7
2,490,097	-		LRK54_RS11205	0.69	+0.8
2,490,097	-		LRK54_RS11205	0.69	-0.8
2,490,156	+		LRK54_RS11205	0.74	+0.8
2,490,156	+		LRK54_RS11205	0.74	-0.2
2,490,156	+		LRK54_RS11205	0.74	+0.3
2,490,156	+		LRK54_RS11205	0.74	+0.2
2,490,156	+		LRK54_RS11205	0.74	+0.3
2,490,156	+		LRK54_RS11205	0.74	-0.9
2,490,156	+		LRK54_RS11205	0.74	+1.6
2,490,156	+		LRK54_RS11205	0.74	-0.4
2,490,156	+		LRK54_RS11205	0.74	+0.8
2,490,156	+		LRK54_RS11205	0.74	+0.2
2,490,156	+		LRK54_RS11205	0.74	+1.9
2,490,156	+		LRK54_RS11205	0.74	-0.3
2,490,156	+		LRK54_RS11205	0.74	-1.5
2,490,156	+		LRK54_RS11205	0.74	-1.0
2,490,156	+		LRK54_RS11205	0.74	+0.6
2,490,156	+		LRK54_RS11205	0.74	+0.4
2,490,157	-		LRK54_RS11205	0.74	+1.1
2,490,157	-		LRK54_RS11205	0.74	-2.3
2,490,157	-		LRK54_RS11205	0.74	-0.2
2,490,157	-		LRK54_RS11205	0.74	-0.2
2,490,157	-		LRK54_RS11205	0.74	+2.0
2,490,157	-		LRK54_RS11205	0.74	+0.7
2,490,157	-		LRK54_RS11205	0.74	-0.4
2,490,157	-		LRK54_RS11205	0.74	-0.1
2,490,157	-		LRK54_RS11205	0.74	-0.9
2,490,157	-		LRK54_RS11205	0.74	-0.6
2,490,157	-		LRK54_RS11205	0.74	+1.3
2,490,157	-		LRK54_RS11205	0.74	+1.1
2,490,157	-		LRK54_RS11205	0.74	-0.7
2,490,157	-		LRK54_RS11205	0.74	-2.4
2,490,393	+				+0.1
2,490,393	+				+0.6
2,490,393	+				-1.2
2,490,393	+				+0.6
2,490,393	+				+0.4
2,490,393	+				-0.8
2,490,393	+				-0.9
2,490,393	+				-0.5
2,490,393	+				+1.3
2,490,393	+				-0.6
2,490,393	+				-1.1
2,490,393	+				-1.5
2,490,393	+				-0.4
2,490,393	+				+0.4
2,490,393	+				-0.5
2,490,393	+				+1.0
2,490,393	+				+0.3
2,490,393	+				-0.8
2,490,393	+				-0.0
2,490,393	+				+0.5
2,490,393	+				-1.5
2,490,393	+				-0.1
2,490,393	+				+1.1
2,490,394	-				+0.9
2,490,394	-				+0.3
2,490,394	-				-0.3
2,490,394	-				-0.2
2,490,394	-				-2.8
2,490,394	-				-0.3
2,490,394	-				-1.7
2,490,394	-				-0.2
2,490,394	-				-0.1
2,490,394	-				-0.7
2,490,394	-				-0.5
2,490,394	-				-0.9
2,490,394	-				+0.3
2,490,394	-				+0.3
2,490,394	-				-1.1
2,490,394	-				-1.2
2,490,394	-				-0.5
2,490,394	-				+1.0
2,490,394	-				-0.9
2,490,394	-				-0.8
2,490,394	-				+0.8
2,490,411	+				+0.4
2,490,411	+				-1.8
2,490,411	+				-0.1
2,490,411	+				-0.1
2,490,412	-				-0.6
2,490,412	-				-1.8
2,490,412	-				+0.5
2,490,608	+				-0.7
2,490,608	+				+0.4
2,490,608	+				-1.7
2,490,608	+				-0.0
2,490,608	+				-0.3
2,490,608	+				+0.2
2,490,608	+				-0.6
2,490,609	-				+1.6
2,490,609	-				+0.0
2,490,609	-				-0.5
2,490,609	-				-1.2
2,490,609	-				-1.8
2,490,609	-				-1.0
2,490,609	-				-0.7
2,490,609	-				-0.5
2,490,609	-				-1.0
2,490,639	+				-1.9
2,490,639	+				-0.8
2,490,639	+				+1.0
2,490,640	-				-1.7
2,490,640	-				-0.6
2,490,640	-				-0.2
2,490,640	-				-1.5
2,490,640	-				-0.8
2,490,648	+				-2.2
2,490,648	+				+0.1
2,490,648	+				-0.3
2,490,648	+				+1.9
2,490,648	+				-0.8
2,490,648	+				+0.0
2,490,648	+				-0.1
2,490,648	+				-0.2
2,490,648	+				-0.4
2,490,648	+				+0.8
2,490,648	+				-0.9
2,490,648	+				+0.9
2,490,648	+				-0.9
2,490,648	+				-0.2
2,490,649	-				-1.0
2,490,649	-				-1.2
2,490,649	-				+0.8
2,490,649	-				+3.1
2,490,649	-				+0.5
2,490,649	-				-0.5
2,490,649	-				-1.3
2,490,649	-				-0.6
2,490,649	-				-1.2
2,490,649	-				-1.1
2,490,860	+		LRK54_RS11210	0.28	-1.5
2,490,954	+		LRK54_RS11210	0.39	+0.9
2,490,954	+		LRK54_RS11210	0.39	+0.9
2,490,954	+		LRK54_RS11210	0.39	+2.1
2,490,954	+		LRK54_RS11210	0.39	+0.8
2,490,954	+		LRK54_RS11210	0.39	+0.9
2,490,954	+		LRK54_RS11210	0.39	-0.4
2,490,954	+		LRK54_RS11210	0.39	+0.4
2,490,954	+		LRK54_RS11210	0.39	-0.3
2,490,954	+		LRK54_RS11210	0.39	+0.7
2,490,955	-		LRK54_RS11210	0.39	-0.0
2,490,955	-		LRK54_RS11210	0.39	+0.7
2,490,955	-		LRK54_RS11210	0.39	+0.2
2,490,955	-		LRK54_RS11210	0.39	-0.2
2,490,955	-		LRK54_RS11210	0.39	-0.2
2,490,955	-		LRK54_RS11210	0.39	-1.0
2,490,955	-		LRK54_RS11210	0.39	-0.1
2,490,955	-		LRK54_RS11210	0.39	+1.2
2,490,955	-		LRK54_RS11210	0.39	-0.8
2,490,955	-		LRK54_RS11210	0.39	-0.5
2,490,955	-		LRK54_RS11210	0.39	-0.0
2,490,975	+		LRK54_RS11210	0.41	-1.2
2,490,975	+		LRK54_RS11210	0.41	-0.1
2,490,975	+		LRK54_RS11210	0.41	-1.4
2,490,976	-		LRK54_RS11210	0.41	-0.1
2,490,976	-		LRK54_RS11210	0.41	-0.8
2,491,014	+		LRK54_RS11210	0.45	-0.1
2,491,014	+		LRK54_RS11210	0.45	+1.6
2,491,014	+		LRK54_RS11210	0.45	+1.0
2,491,014	+		LRK54_RS11210	0.45	+0.3
2,491,014	+		LRK54_RS11210	0.45	-0.2
2,491,014	+		LRK54_RS11210	0.45	+0.6
2,491,014	+		LRK54_RS11210	0.45	+0.6
2,491,014	+		LRK54_RS11210	0.45	-0.3
2,491,014	+		LRK54_RS11210	0.45	+1.7
2,491,014	+		LRK54_RS11210	0.45	+0.7
2,491,014	+		LRK54_RS11210	0.45	-1.1
2,491,014	+		LRK54_RS11210	0.45	-0.2
2,491,015	-		LRK54_RS11210	0.46	+0.0
2,491,015	-		LRK54_RS11210	0.46	-0.8
2,491,015	-		LRK54_RS11210	0.46	-0.1
2,491,015	-		LRK54_RS11210	0.46	-0.4
2,491,015	-		LRK54_RS11210	0.46	-0.7
2,491,015	-		LRK54_RS11210	0.46	+0.6
2,491,015	-		LRK54_RS11210	0.46	-1.5
2,491,015	-		LRK54_RS11210	0.46	+0.9
2,491,015	-		LRK54_RS11210	0.46	-1.1
2,491,015	-		LRK54_RS11210	0.46	-1.3
2,491,015	-		LRK54_RS11210	0.46	+1.5
2,491,015	-		LRK54_RS11210	0.46	-0.7
2,491,015	-		LRK54_RS11210	0.46	-0.7
2,491,015	-		LRK54_RS11210	0.46	+0.8
2,491,015	-		LRK54_RS11210	0.46	+0.3
2,491,015	-		LRK54_RS11210	0.46	+0.6
2,491,015	-		LRK54_RS11210	0.46	+0.5
2,491,015	-		LRK54_RS11210	0.46	+0.2
2,491,035	+		LRK54_RS11210	0.48	+0.6
2,491,035	+		LRK54_RS11210	0.48	-0.5
2,491,035	+		LRK54_RS11210	0.48	-0.1
2,491,035	+		LRK54_RS11210	0.48	-0.2
2,491,035	+		LRK54_RS11210	0.48	-0.4
2,491,035	+		LRK54_RS11210	0.48	+0.1
2,491,035	+		LRK54_RS11210	0.48	-2.2
2,491,035	+		LRK54_RS11210	0.48	+1.0
2,491,035	+		LRK54_RS11210	0.48	+0.8
2,491,035	+		LRK54_RS11210	0.48	+0.0
2,491,035	+		LRK54_RS11210	0.48	+1.5
2,491,035	+		LRK54_RS11210	0.48	+0.3
2,491,035	+		LRK54_RS11210	0.48	+0.1
2,491,035	+		LRK54_RS11210	0.48	-0.4
2,491,035	+		LRK54_RS11210	0.48	-0.4
2,491,035	+		LRK54_RS11210	0.48	-0.9
2,491,035	+		LRK54_RS11210	0.48	+0.9
2,491,035	+		LRK54_RS11210	0.48	-1.0
2,491,036	-		LRK54_RS11210	0.48	+0.1
2,491,036	-		LRK54_RS11210	0.48	+1.3
2,491,036	-		LRK54_RS11210	0.48	-0.4
2,491,036	-		LRK54_RS11210	0.48	-0.1
2,491,036	-		LRK54_RS11210	0.48	-0.4
2,491,036	-		LRK54_RS11210	0.48	-0.1
2,491,036	-		LRK54_RS11210	0.48	-0.8
2,491,036	-		LRK54_RS11210	0.48	+1.2
2,491,036	-		LRK54_RS11210	0.48	-0.7
2,491,036	-		LRK54_RS11210	0.48	+0.7
2,491,036	-		LRK54_RS11210	0.48	+0.6
2,491,036	-		LRK54_RS11210	0.48	-1.3
2,491,036	-		LRK54_RS11210	0.48	-1.1
2,491,036	-		LRK54_RS11210	0.48	+0.9
2,491,036	-		LRK54_RS11210	0.48	-0.6
2,491,036	-		LRK54_RS11210	0.48	-1.3
2,491,036	-		LRK54_RS11210	0.48	-0.7
2,491,036	-		LRK54_RS11210	0.48	-0.3
2,491,036	-		LRK54_RS11210	0.48	+0.9
2,491,036	-		LRK54_RS11210	0.48	+1.1
2,491,036	-		LRK54_RS11210	0.48	-0.6
2,491,065	+		LRK54_RS11210	0.51	-0.5
2,491,065	+		LRK54_RS11210	0.51	-0.5
2,491,236	+		LRK54_RS11210	0.71	+2.2
2,491,236	+		LRK54_RS11210	0.71	+0.6
2,491,236	+		LRK54_RS11210	0.71	+0.7
2,491,236	+		LRK54_RS11210	0.71	+1.1
2,491,236	+		LRK54_RS11210	0.71	+1.1
2,491,236	+		LRK54_RS11210	0.71	-0.2
2,491,236	+		LRK54_RS11210	0.71	+0.8
2,491,236	+		LRK54_RS11210	0.71	+1.0
2,491,236	+		LRK54_RS11210	0.71	+0.5
2,491,236	+		LRK54_RS11210	0.71	-0.8
2,491,236	+		LRK54_RS11210	0.71	+1.1
2,491,236	+		LRK54_RS11210	0.71	+0.3
2,491,236	+		LRK54_RS11210	0.71	-0.1
2,491,236	+		LRK54_RS11210	0.71	+2.0
2,491,236	+		LRK54_RS11210	0.71	-0.3
2,491,236	+		LRK54_RS11210	0.71	-1.0
2,491,236	+		LRK54_RS11210	0.71	-0.8
2,491,236	+		LRK54_RS11210	0.71	-0.9
2,491,236	+		LRK54_RS11210	0.71	-0.2
2,491,236	+		LRK54_RS11210	0.71	+0.5
2,491,236	+		LRK54_RS11210	0.71	+1.9
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2,491,236	+		LRK54_RS11210	0.71	+0.1
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2,491,524	+				+1.3
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