Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09275

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,033,498	+				-0.2
2,033,499	-				-0.9
2,033,666	+		LRK54_RS09275	0.18	+0.6
2,033,666	+		LRK54_RS09275	0.18	+0.8
2,033,666	+		LRK54_RS09275	0.18	+0.1
2,033,666	+		LRK54_RS09275	0.18	+1.3
2,033,666	+		LRK54_RS09275	0.18	+1.3
2,033,666	+		LRK54_RS09275	0.18	+1.2
2,033,666	+		LRK54_RS09275	0.18	+1.3
2,033,666	+		LRK54_RS09275	0.18	+0.7
2,033,666	+		LRK54_RS09275	0.18	+2.9
2,033,666	+		LRK54_RS09275	0.18	+1.2
2,033,666	+		LRK54_RS09275	0.18	+0.9
2,033,666	+		LRK54_RS09275	0.18	+0.1
2,033,666	+		LRK54_RS09275	0.18	-0.4
2,033,666	+		LRK54_RS09275	0.18	+0.9
2,033,666	+		LRK54_RS09275	0.18	+1.0
2,033,666	+		LRK54_RS09275	0.18	+0.0
2,033,666	+		LRK54_RS09275	0.18	+0.3
2,033,666	+		LRK54_RS09275	0.18	+1.8
2,033,666	+		LRK54_RS09275	0.18	+1.7
2,033,666	+		LRK54_RS09275	0.18	+0.9
2,033,666	+		LRK54_RS09275	0.18	-0.4
2,033,667	-		LRK54_RS09275	0.18	+0.1
2,033,667	-		LRK54_RS09275	0.18	+1.2
2,033,667	-		LRK54_RS09275	0.18	+0.5
2,033,667	-		LRK54_RS09275	0.18	+1.6
2,033,667	-		LRK54_RS09275	0.18	+0.6
2,033,667	-		LRK54_RS09275	0.18	-0.5
2,033,667	-		LRK54_RS09275	0.18	+1.6
2,033,667	-		LRK54_RS09275	0.18	+0.6
2,033,667	-		LRK54_RS09275	0.18	+1.1
2,033,667	-		LRK54_RS09275	0.18	+1.6
2,033,667	-		LRK54_RS09275	0.18	+0.1
2,033,667	-		LRK54_RS09275	0.18	+0.5
2,033,667	-		LRK54_RS09275	0.18	+1.2
2,033,667	-		LRK54_RS09275	0.18	+0.9
2,033,667	-		LRK54_RS09275	0.18	+1.4
2,033,667	-		LRK54_RS09275	0.18	+0.4
2,033,667	-		LRK54_RS09275	0.18	+0.4
2,033,667	-		LRK54_RS09275	0.18	+0.1
2,033,667	-		LRK54_RS09275	0.18	+2.2
2,033,667	-		LRK54_RS09275	0.18	+2.1
2,033,667	-		LRK54_RS09275	0.18	+1.9
2,033,667	-		LRK54_RS09275	0.18	+2.2
2,033,667	-		LRK54_RS09275	0.18	+0.7
2,033,746	+		LRK54_RS09275	0.32	+1.3
2,033,746	+		LRK54_RS09275	0.32	+0.2
2,033,746	+		LRK54_RS09275	0.32	+1.3
2,033,747	-		LRK54_RS09275	0.33	-0.5
2,033,747	-		LRK54_RS09275	0.33	+0.7
2,033,747	-		LRK54_RS09275	0.33	-0.2
2,033,747	-		LRK54_RS09275	0.33	+0.7
2,033,747	-		LRK54_RS09275	0.33	+0.2
2,033,747	-		LRK54_RS09275	0.33	+0.9
2,033,747	-		LRK54_RS09275	0.33	+0.4
2,033,747	-		LRK54_RS09275	0.33	+1.7
2,033,747	-		LRK54_RS09275	0.33	+1.0
2,033,747	-		LRK54_RS09275	0.33	+0.5
2,033,747	-		LRK54_RS09275	0.33	+0.2
2,033,747	-		LRK54_RS09275	0.33	+2.7
2,033,852	+		LRK54_RS09275	0.51	+0.3
2,033,852	+		LRK54_RS09275	0.51	+0.4
2,033,852	+		LRK54_RS09275	0.51	+1.1
2,033,852	+		LRK54_RS09275	0.51	+2.1
2,033,852	+		LRK54_RS09275	0.51	+0.0
2,033,852	+		LRK54_RS09275	0.51	+1.7
2,033,852	+		LRK54_RS09275	0.51	+1.6
2,033,852	+		LRK54_RS09275	0.51	+0.1
2,033,852	+		LRK54_RS09275	0.51	+0.5
2,033,852	+		LRK54_RS09275	0.51	-0.6
2,033,852	+		LRK54_RS09275	0.51	+0.6
2,033,852	+		LRK54_RS09275	0.51	+0.1
2,033,852	+		LRK54_RS09275	0.51	+0.7
2,033,852	+		LRK54_RS09275	0.51	+0.7
2,033,852	+		LRK54_RS09275	0.51	+1.3
2,033,852	+		LRK54_RS09275	0.51	+0.9
2,033,852	+		LRK54_RS09275	0.51	+0.6
2,033,852	+		LRK54_RS09275	0.51	-0.9
2,033,852	+		LRK54_RS09275	0.51	-0.2
2,033,852	+		LRK54_RS09275	0.51	+0.1
2,033,852	+		LRK54_RS09275	0.51	+0.3
2,033,852	+		LRK54_RS09275	0.51	+0.6
2,033,852	+		LRK54_RS09275	0.51	+0.1
2,033,852	+		LRK54_RS09275	0.51	+1.6
2,033,852	+		LRK54_RS09275	0.51	-0.1
2,033,852	+		LRK54_RS09275	0.51	+1.1
2,033,852	+		LRK54_RS09275	0.51	+1.7
2,033,852	+		LRK54_RS09275	0.51	+1.7
2,033,852	+		LRK54_RS09275	0.51	+1.4
2,033,853	-		LRK54_RS09275	0.51	-0.1
2,033,853	-		LRK54_RS09275	0.51	-0.8
2,033,853	-		LRK54_RS09275	0.51	+0.8
2,033,853	-		LRK54_RS09275	0.51	-0.1
2,033,853	-		LRK54_RS09275	0.51	+1.9
2,033,853	-		LRK54_RS09275	0.51	+0.5
2,033,853	-		LRK54_RS09275	0.51	+0.2
2,033,853	-		LRK54_RS09275	0.51	+1.3
2,033,853	-		LRK54_RS09275	0.51	+0.6
2,033,853	-		LRK54_RS09275	0.51	+0.7
2,033,853	-		LRK54_RS09275	0.51	-0.9
2,033,853	-		LRK54_RS09275	0.51	-0.0
2,033,853	-		LRK54_RS09275	0.51	+0.6
2,033,853	-		LRK54_RS09275	0.51	+0.0
2,033,853	-		LRK54_RS09275	0.51	+1.2
2,033,853	-		LRK54_RS09275	0.51	-0.1
2,033,853	-		LRK54_RS09275	0.51	+0.4
2,033,853	-		LRK54_RS09275	0.51	+0.6
2,033,853	-		LRK54_RS09275	0.51	-1.9
2,034,072	+				+2.0
2,034,072	+				+3.2
2,034,072	+				+1.8
2,034,072	+				+1.0
2,034,072	+				+1.7
2,034,072	+				+1.0
2,034,072	+				+0.3
2,034,072	+				+0.3
2,034,072	+				+2.4
2,034,072	+				+1.0
2,034,072	+				+1.0
2,034,072	+				+1.4
2,034,072	+				-0.2
2,034,072	+				+1.5
2,034,072	+				-0.3
2,034,072	+				+1.9
2,034,073	-				+1.2
2,034,073	-				+1.8
2,034,073	-				+1.8
2,034,073	-				+0.7
2,034,073	-				+1.5
2,034,073	-				+0.9
2,034,073	-				+1.7
2,034,073	-				+1.1
2,034,073	-				+0.8
2,034,073	-				+1.3
2,034,073	-				+1.2
2,034,073	-				+0.8
2,034,073	-				+1.4
2,034,073	-				+0.8
2,034,073	-				+2.4
2,034,073	-				+1.3
2,034,073	-				+0.8
2,034,073	-				+1.0
2,034,120	+				+1.3
2,034,120	+				+0.3
2,034,120	+				+1.6
2,034,120	+				+1.6
2,034,120	+				+0.9
2,034,120	+				+1.3
2,034,120	+				+1.4
2,034,120	+				+1.6
2,034,120	+				+2.4
2,034,120	+				+1.3
2,034,121	-				+3.4
2,034,121	-				+0.9
2,034,121	-				+1.3
2,034,121	-				+3.3
2,034,121	-				-0.8
2,034,121	-				+1.4
2,034,133	+				+0.8
2,034,133	+				-0.3
2,034,133	+				-0.4
2,034,133	+				+1.2
2,034,134	-				-0.5
2,034,134	-				+0.1
2,034,134	-				+1.3
2,034,134	-				+0.3
2,034,134	-				-0.3
2,034,134	-				+0.2
2,034,152	+				+1.1
2,034,153	-				+0.9
2,034,157	+				+1.2
2,034,157	+				+1.8
2,034,158	-				+3.2
2,034,158	-				-0.2
2,034,158	-				+1.8
2,034,158	-				+0.4
2,034,158	-				+0.8
2,034,158	-				+0.0
2,034,158	-				-0.4
2,034,158	-				+1.5
2,034,163	+				-0.1
2,034,163	+				+2.7
2,034,163	+				-0.5
2,034,164	-				+0.2
2,034,164	-				-0.4
2,034,203	-				+0.5
2,034,203	-				-1.4
2,034,203	-				+1.2
2,034,203	-				+0.1
2,034,218	+				+0.9
2,034,218	+				+2.8
2,034,218	+				+4.4
2,034,218	+				+2.4
2,034,218	+				+2.2
2,034,218	+				+1.4
2,034,218	+				+3.7
2,034,218	+				+2.6
2,034,218	+				+2.2
2,034,218	+				+0.1
2,034,218	+				+0.2
2,034,218	+				+0.7
2,034,219	-				-0.0
2,034,219	-				-0.3
2,034,219	-				-0.0
2,034,219	-				+0.1
2,034,219	-				-0.3
2,034,219	-				-0.8
2,034,219	-				-1.1
2,034,219	-				-3.1
2,034,219	-				+2.2
2,034,219	-				+3.5
2,034,219	-				+0.4
2,034,235	+				+1.9
2,034,235	+				+3.0
2,034,235	+				+2.9
2,034,235	+				+2.8
2,034,235	+				+3.8
2,034,235	+				+3.8
2,034,235	+				+2.7
2,034,235	+				+3.1
2,034,235	+				+0.2
2,034,235	+				+2.8
2,034,235	+				+1.8
2,034,235	+				+2.6
2,034,235	+				+3.6
2,034,235	+				+2.0
2,034,235	-				+0.9
2,034,235	-				+0.0
2,034,236	-				+0.6
2,034,236	-				+0.0
2,034,236	-				-1.1
2,034,236	-				+0.9
2,034,236	-				+1.0
2,034,236	-				-1.8
2,034,236	-				+1.9
2,034,246	+				+1.9
2,034,246	+				+1.2
2,034,246	+				+2.0
2,034,246	+				+2.2
2,034,246	+				+2.4
2,034,246	+				+2.2
2,034,247	-				+0.2
2,034,247	-				+1.7
2,034,247	-				+0.3
2,034,247	-				+0.5
2,034,247	-				-1.0
2,034,251	+				+2.5
2,034,251	+				+1.3
2,034,251	+				+2.1
2,034,251	+				+2.6
2,034,251	+				+0.4
2,034,251	+				+1.0
2,034,251	+				+1.6
2,034,251	+				+1.7
2,034,251	+				+2.0
2,034,251	+				+1.3
2,034,251	+				+1.1
2,034,251	+				+2.0
2,034,251	+				+3.2
2,034,251	+				+2.0
2,034,251	+				+1.1
2,034,251	+				+0.6
2,034,251	+				+2.5
2,034,251	+				+2.0
2,034,251	+				-0.1
2,034,251	+				+2.5
2,034,251	+				+1.0
2,034,251	+				+2.4
2,034,251	+				+1.9
2,034,251	+				+2.1
2,034,251	+				+2.3
2,034,251	+				+1.2
2,034,251	+				+2.1
2,034,251	+				+0.4
2,034,251	+				+1.5
2,034,251	+				-0.8
2,034,251	+				+0.4
2,034,252	-				+1.8
2,034,252	-				-0.3
2,034,252	-				-0.7
2,034,252	-				+0.1
2,034,252	-				+1.7
2,034,252	-				-0.2
2,034,252	-				-0.2
2,034,252	-				-0.5
2,034,252	-				+0.7
2,034,252	-				-0.2
2,034,252	-				-0.7
2,034,252	-				+0.1
2,034,252	-				-0.3
2,034,252	-				+0.9
2,034,252	-				-0.6
2,034,252	-				-0.0
2,034,252	-				+1.3
2,034,252	-				-0.3
2,034,252	-				+1.2
2,034,252	-				-0.2
2,034,252	-				-0.6
2,034,252	-				+1.2
2,034,252	-				+0.8
2,034,252	-				+0.4
2,034,252	-				-0.3
2,034,252	-				+0.9
2,034,252	-				+1.5
2,034,252	-				+0.2
2,034,252	-				+0.2
2,034,252	-				+0.9
2,034,252	-				+1.9
2,034,252	-				+0.8
2,034,252	-				+0.5
2,034,252	-				-1.6
2,034,252	-				+0.0
2,034,252	-				-1.1
2,034,252	-				-0.1
2,034,268	+				+1.3
2,034,277	+				+2.2
2,034,277	+				-0.3
2,034,277	+				+1.4
2,034,277	+				+2.4
2,034,277	+				+1.2
2,034,277	+				+1.4
2,034,277	+				+2.0
2,034,277	+				+1.8
2,034,277	+				+1.1
2,034,277	+				+1.3
2,034,278	-				+0.2
2,034,278	-				-0.8
2,034,278	-				+0.2
2,034,278	-				+1.0
2,034,278	-				+0.1
2,034,278	-				+1.1
2,034,278	-				+0.4
2,034,278	-				-0.5
2,034,278	-				+0.6
2,034,278	-				-2.0
2,034,278	-				+0.6
2,034,278	-				+1.4
2,034,278	-				-1.5
2,034,278	-				-0.4
2,034,278	-				+0.9
2,034,278	-				-0.7
2,034,278	-				+1.3
2,034,282	+				+0.8
2,034,282	+				+0.2
2,034,282	+				-0.5
2,034,282	+				+0.6
2,034,282	+				+0.6
2,034,282	+				+1.0
2,034,282	+				+2.0
2,034,282	+				+1.2
2,034,282	+				+0.6
2,034,282	+				-0.9
2,034,282	+				+0.4
2,034,282	+				+1.7
2,034,282	+				+1.5
2,034,282	+				+2.0
2,034,282	+				+1.8
2,034,282	+				+1.6
2,034,282	+				+2.6
2,034,282	+				+2.0
2,034,282	+				+1.4
2,034,283	-				+0.1
2,034,283	-				+1.2
2,034,283	-				+0.8
2,034,283	-				-2.0
2,034,283	-				+0.8
2,034,283	-				+0.3
2,034,283	-				-2.1
2,034,283	-				-0.3
2,034,283	-				-0.2
2,034,283	-				+2.4
2,034,283	-				-0.3
2,034,283	-				+0.5
2,034,283	-				+1.3
2,034,283	-				+0.5
2,034,283	-				+0.6
2,034,283	-				+0.7
2,034,283	-				-0.4
2,034,283	-				+0.9
2,034,283	-				+0.1
2,034,311	+				+0.8
2,034,311	+				+2.9
2,034,311	+				+0.2
2,034,311	+				+1.5
2,034,311	+				+2.4
2,034,311	+				+1.5
2,034,311	+				+1.2
2,034,311	+				+1.8
2,034,311	+				-1.1
2,034,311	+				+1.3
2,034,311	+				+1.3
2,034,311	+				+1.4
2,034,311	+				+2.8
2,034,311	+				+1.5
2,034,311	+				+1.6
2,034,311	+				+2.0
2,034,311	+				+0.1
2,034,311	+				-0.4
2,034,311	+				+1.5
2,034,311	+				+1.1
2,034,311	+				+1.7
2,034,311	+				+0.5
2,034,311	+				+1.7
2,034,311	+				+2.8
2,034,311	+				+1.6
2,034,311	+				+1.9
2,034,311	+				+2.8
2,034,311	+				+1.3
2,034,312	-				+0.2
2,034,312	-				+2.3
2,034,312	-				+0.0
2,034,312	-				+0.7
2,034,312	-				-0.5
2,034,312	-				-0.3
2,034,312	-				+0.4
2,034,312	-				-0.1
2,034,312	-				-1.2
2,034,312	-				+1.9
2,034,312	-				-0.5
2,034,312	-				+2.3
2,034,312	-				-0.5
2,034,312	-				+2.7
2,034,312	-				+1.5
2,034,312	-				-0.5
2,034,312	-				-0.2
2,034,312	-				-1.2
2,034,312	-				+0.2
2,034,414	+				-0.7
2,034,415	-				+1.3
2,034,573	+				-1.9
2,034,573	+				+1.2
2,034,573	+				+0.1
2,034,573	+				+2.7
2,034,574	-				-0.8
2,034,574	-				+1.2
2,034,574	-				+1.7
2,034,574	-				-1.9
2,034,576	+				-0.4
2,034,576	+				-0.2
2,034,577	-				+1.1
2,034,577	-				+0.4
2,034,577	-				+0.3
2,034,611	-				-0.0
2,034,611	-				+0.7
2,034,640	+				-1.2
2,034,640	+				-0.4
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