Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22505

Experiment: D-Glucose-6-Phosphate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose-6-Phosphate (C)
5,152,120	+		HSERO_RS22500	0.68	+0.4
5,152,170	+		HSERO_RS22500	0.72	-0.7
5,152,279	-		HSERO_RS22500	0.80	-0.7
5,152,279	-		HSERO_RS22500	0.80	-0.3
5,152,394	-		HSERO_RS22500	0.89	+0.0
5,152,416	-				-0.6
5,152,574	+				-0.0
5,152,633	+				-1.0
5,152,803	+				+0.7
5,152,813	+				+0.4
5,152,967	-				+0.2
5,153,197	-				-0.3
5,153,339	+				-1.3
5,153,359	-				+1.1
5,153,463	-				+0.0
5,153,573	-				-0.9
5,153,639	+				+0.5
5,153,702	+				-1.8
5,153,711	-				-0.6
5,153,781	+				-0.1
5,153,789	-				+0.2
5,153,936	+				-0.3
5,154,173	-		HSERO_RS22505	0.11	-1.5
5,154,273	+		HSERO_RS22505	0.12	-1.6
5,154,598	+		HSERO_RS22505	0.15	-0.8
5,154,606	-		HSERO_RS22505	0.15	+0.9
5,154,707	+		HSERO_RS22505	0.16	+0.1
5,154,735	-		HSERO_RS22505	0.16	-0.4
5,154,758	+		HSERO_RS22505	0.16	-0.6
5,154,771	-				-1.3
5,154,792	-		HSERO_RS22505	0.17	+0.2
5,154,862	+		HSERO_RS22505	0.17	-0.4
5,154,901	-		HSERO_RS22505	0.18	-0.7
5,154,909	-		HSERO_RS22505	0.18	+0.2
5,154,931	+				+3.3
5,155,030	-		HSERO_RS22505	0.19	-0.5
5,155,237	+		HSERO_RS22505	0.21	-1.5
5,155,391	+		HSERO_RS22505	0.22	-0.8
5,155,421	+		HSERO_RS22505	0.22	-1.3
5,155,446	-		HSERO_RS22505	0.23	-1.8
5,155,493	+		HSERO_RS22505	0.23	-1.9
5,155,537	-		HSERO_RS22505	0.24	+0.3
5,155,669	-		HSERO_RS22505	0.25	-0.8
5,155,867	+		HSERO_RS22505	0.27	-0.3
5,155,944	+		HSERO_RS22505	0.27	-0.5
5,155,975	+		HSERO_RS22505	0.28	-1.1
5,156,021	-		HSERO_RS22505	0.28	+0.3
5,156,099	-		HSERO_RS22505	0.29	-0.0
5,156,134	+		HSERO_RS22505	0.29	+1.6
5,156,137	-		HSERO_RS22505	0.29	-0.4
5,156,158	-		HSERO_RS22505	0.29	+0.6
5,156,215	-		HSERO_RS22505	0.30	+0.1
5,156,399	+		HSERO_RS22505	0.31	+1.9
5,156,571	-		HSERO_RS22505	0.33	-0.6
5,156,700	+		HSERO_RS22505	0.34	+0.4
5,156,818	+		HSERO_RS22505	0.35	-0.2
5,156,898	+		HSERO_RS22505	0.36	-0.3
5,156,906	-		HSERO_RS22505	0.36	+0.6
5,156,906	-		HSERO_RS22505	0.36	-1.0
5,156,965	+		HSERO_RS22505	0.37	-1.3
5,157,024	-		HSERO_RS22505	0.37	-0.2
5,157,030	-		HSERO_RS22505	0.37	-0.1
5,157,045	-		HSERO_RS22505	0.37	-0.4
5,157,173	+		HSERO_RS22505	0.39	+0.3
5,157,327	+		HSERO_RS22505	0.40	-0.3
5,157,357	-		HSERO_RS22505	0.40	-0.8
5,157,386	+		HSERO_RS22505	0.41	-0.1
5,157,755	+		HSERO_RS22505	0.44	-0.6
5,157,763	-		HSERO_RS22505	0.44	+0.5
5,157,936	+		HSERO_RS22505	0.46	-1.0
5,157,976	+		HSERO_RS22505	0.46	-1.0
5,158,002	-		HSERO_RS22505	0.46	-1.9
5,158,188	-		HSERO_RS22505	0.48	-0.3
5,158,288	-		HSERO_RS22505	0.49	-0.4
5,158,545	-		HSERO_RS22505	0.51	-0.8
5,158,590	+		HSERO_RS22505	0.52	+0.9
5,158,913	-		HSERO_RS22505	0.55	+1.5
5,159,229	+		HSERO_RS22505	0.57	+0.1
5,159,247	+		HSERO_RS22505	0.58	-0.3
5,159,292	-		HSERO_RS22505	0.58	-0.3
5,159,292	-		HSERO_RS22505	0.58	+0.5
5,159,325	-		HSERO_RS22505	0.58	-0.1
5,159,345	+		HSERO_RS22505	0.59	+0.2
5,159,527	+		HSERO_RS22505	0.60	+0.9
5,159,645	-		HSERO_RS22505	0.61	+0.5
5,159,673	+		HSERO_RS22505	0.62	-0.0
5,159,807	-		HSERO_RS22505	0.63	-0.2
5,159,974	-		HSERO_RS22505	0.64	-0.5
5,160,012	-		HSERO_RS22505	0.65	-0.3
5,160,229	-		HSERO_RS22505	0.67	-1.7
5,160,373	+		HSERO_RS22505	0.68	-0.2
5,160,643	-		HSERO_RS22505	0.70	-0.3
5,160,778	+		HSERO_RS22505	0.72	+0.5
5,160,786	+		HSERO_RS22505	0.72	-0.6
5,160,970	-		HSERO_RS22505	0.73	-0.3
5,161,156	+		HSERO_RS22505	0.75	-0.2
5,161,164	-		HSERO_RS22505	0.75	+0.1
5,161,183	-		HSERO_RS22505	0.75	-1.2
5,161,260	+		HSERO_RS22505	0.76	+0.1
5,161,304	+		HSERO_RS22505	0.76	-0.1
5,161,304	+		HSERO_RS22505	0.76	-0.0
5,161,330	-		HSERO_RS22505	0.77	-0.1
5,161,490	+		HSERO_RS22505	0.78	+0.1
5,161,555	+		HSERO_RS22505	0.79	+0.0
5,161,568	-		HSERO_RS22505	0.79	-0.0
5,161,610	-		HSERO_RS22505	0.79	-2.2
5,161,617	+		HSERO_RS22505	0.79	+0.9
5,161,684	-		HSERO_RS22505	0.80	-0.3
5,161,686	-		HSERO_RS22505	0.80	+0.9
5,161,758	+		HSERO_RS22505	0.81	-2.4
5,161,904	-		HSERO_RS22505	0.82	+0.1
5,161,927	+		HSERO_RS22505	0.82	-0.4
5,162,355	-		HSERO_RS22505	0.86	-0.3
5,162,420	-		HSERO_RS22505	0.87	+0.4
5,162,435	+		HSERO_RS22505	0.87	-1.0
5,162,443	-		HSERO_RS22505	0.87	-1.1
5,162,573	-		HSERO_RS22505	0.88	-2.5
5,162,823	-				+0.1
5,163,073	-				-0.2
5,163,099	+				+1.2
5,163,168	+				-0.3
5,163,445	-				-0.2
5,163,505	-				-0.5
5,163,553	-				-1.4
5,163,589	+				+0.1
5,163,690	+				+0.5
5,163,707	+				+3.3
5,163,713	+				-0.6
5,163,757	+				-1.2
5,163,796	+				+0.1
5,163,796	+				+0.7
5,163,798	+				-1.6
5,163,804	-				+0.6
5,163,806	-				-1.0
5,163,824	+				-0.5
5,163,824	+				-0.1
5,164,216	+		HSERO_RS22510	0.12	-1.3
5,164,293	-		HSERO_RS22510	0.18	+1.2
5,164,315	-		HSERO_RS22510	0.20	+0.3
5,164,368	+		HSERO_RS22510	0.25	-0.6
5,164,478	+		HSERO_RS22510	0.35	+1.6
5,164,643	+		HSERO_RS22510	0.50	-2.7
5,164,719	+		HSERO_RS22510	0.56	-0.5
5,164,814	-		HSERO_RS22510	0.65	+2.3
5,164,814	-		HSERO_RS22510	0.65	+0.5
5,164,852	+		HSERO_RS22510	0.68	+0.7