Experiment: Beta-Lactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotides HMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides HMPREF1058_RS17040 and HMPREF1058_RS17035 are separated by 41 nucleotides
HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923
_RS17050
HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782
_RS17045
HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512
_RS17040
HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654
_RS17035
Position (kb) 531
532
533 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 530.826 kb on + strand, within HMPREF1058_RS17050 at 530.827 kb on - strand, within HMPREF1058_RS17050 at 530.831 kb on + strand at 530.848 kb on - strand at 530.848 kb on - strand at 531.165 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.324 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.516 kb on + strand, within HMPREF1058_RS17045 at 531.517 kb on - strand, within HMPREF1058_RS17045 at 531.723 kb on + strand at 531.724 kb on - strand at 531.799 kb on - strand at 531.859 kb on + strand at 531.946 kb on - strand, within HMPREF1058_RS17040 at 531.958 kb on - strand, within HMPREF1058_RS17040 at 532.013 kb on - strand, within HMPREF1058_RS17040 at 532.013 kb on - strand, within HMPREF1058_RS17040 at 532.014 kb on + strand, within HMPREF1058_RS17040 at 532.016 kb on + strand, within HMPREF1058_RS17040 at 532.080 kb on + strand, within HMPREF1058_RS17040 at 532.080 kb on + strand, within HMPREF1058_RS17040 at 532.081 kb on - strand, within HMPREF1058_RS17040 at 532.083 kb on - strand, within HMPREF1058_RS17040 at 532.103 kb on - strand, within HMPREF1058_RS17040 at 532.124 kb on + strand, within HMPREF1058_RS17040 at 532.125 kb on - strand, within HMPREF1058_RS17040 at 532.188 kb on + strand, within HMPREF1058_RS17040 at 532.215 kb on + strand, within HMPREF1058_RS17040 at 532.354 kb on - strand, within HMPREF1058_RS17040 at 532.498 kb on - strand at 532.516 kb on + strand at 532.590 kb on - strand at 532.616 kb on - strand at 532.622 kb on + strand at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.692 kb on - strand, within HMPREF1058_RS17035 at 532.748 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.792 kb on + strand, within HMPREF1058_RS17035 at 532.793 kb on - strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.879 kb on + strand, within HMPREF1058_RS17035 at 532.965 kb on + strand, within HMPREF1058_RS17035 at 532.967 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.117 kb on + strand, within HMPREF1058_RS17035 at 533.136 kb on + strand, within HMPREF1058_RS17035 at 533.228 kb on + strand at 533.231 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.280 kb on - strand, within HMPREF1058_RS17035 at 533.499 kb on - strand, within HMPREF1058_RS17035
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 20 mM (C) remove 530,826 + HMPREF1058_RS17050 0.90 -1.1 530,827 - HMPREF1058_RS17050 0.90 -1.2 530,831 + -1.6 530,848 - -1.8 530,848 - -3.2 531,165 + HMPREF1058_RS17045 0.27 -1.7 531,323 + HMPREF1058_RS17045 0.45 -2.5 531,323 + HMPREF1058_RS17045 0.45 +0.2 531,324 - HMPREF1058_RS17045 0.46 -1.1 531,513 - HMPREF1058_RS17045 0.68 -1.2 531,513 - HMPREF1058_RS17045 0.68 -1.6 531,516 + HMPREF1058_RS17045 0.68 -2.5 531,517 - HMPREF1058_RS17045 0.68 -2.6 531,723 + -1.7 531,724 - -2.9 531,799 - -1.4 531,859 + -3.6 531,946 - HMPREF1058_RS17040 0.20 +1.0 531,958 - HMPREF1058_RS17040 0.22 -1.6 532,013 - HMPREF1058_RS17040 0.30 -2.8 532,013 - HMPREF1058_RS17040 0.30 -2.5 532,014 + HMPREF1058_RS17040 0.30 -3.3 532,016 + HMPREF1058_RS17040 0.30 -0.9 532,080 + HMPREF1058_RS17040 0.39 -0.8 532,080 + HMPREF1058_RS17040 0.39 -1.8 532,081 - HMPREF1058_RS17040 0.39 -1.0 532,083 - HMPREF1058_RS17040 0.40 -1.9 532,103 - HMPREF1058_RS17040 0.42 -0.6 532,124 + HMPREF1058_RS17040 0.45 -0.8 532,125 - HMPREF1058_RS17040 0.45 -1.9 532,188 + HMPREF1058_RS17040 0.54 -2.4 532,215 + HMPREF1058_RS17040 0.58 -0.8 532,354 - HMPREF1058_RS17040 0.78 -1.7 532,498 - -2.3 532,516 + -2.3 532,590 - +0.4 532,616 - +0.7 532,622 + -1.0 532,688 - HMPREF1058_RS17035 0.12 -5.4 532,688 - HMPREF1058_RS17035 0.12 -2.3 532,688 - HMPREF1058_RS17035 0.12 -3.0 532,692 - HMPREF1058_RS17035 0.13 -3.3 532,748 + HMPREF1058_RS17035 0.18 -2.0 532,770 + HMPREF1058_RS17035 0.20 -1.9 532,770 + HMPREF1058_RS17035 0.20 -1.0 532,770 + HMPREF1058_RS17035 0.20 -1.0 532,792 + HMPREF1058_RS17035 0.22 -2.1 532,793 - HMPREF1058_RS17035 0.22 -4.4 532,850 - HMPREF1058_RS17035 0.27 -3.2 532,850 - HMPREF1058_RS17035 0.27 -2.6 532,879 + HMPREF1058_RS17035 0.30 -2.4 532,965 + HMPREF1058_RS17035 0.37 -2.5 532,967 + HMPREF1058_RS17035 0.38 -2.1 533,034 + HMPREF1058_RS17035 0.44 -3.8 533,034 + HMPREF1058_RS17035 0.44 -2.0 533,035 - HMPREF1058_RS17035 0.44 -2.3 533,035 - HMPREF1058_RS17035 0.44 -3.2 533,035 - HMPREF1058_RS17035 0.44 -0.6 533,035 - HMPREF1058_RS17035 0.44 -1.0 533,035 - HMPREF1058_RS17035 0.44 -4.3 533,067 + HMPREF1058_RS17035 0.47 -1.9 533,067 + HMPREF1058_RS17035 0.47 -2.0 533,103 - HMPREF1058_RS17035 0.50 -4.6 533,103 - HMPREF1058_RS17035 0.50 -3.3 533,103 - HMPREF1058_RS17035 0.50 -2.3 533,103 - HMPREF1058_RS17035 0.50 -2.6 533,103 - HMPREF1058_RS17035 0.50 -2.8 533,117 + HMPREF1058_RS17035 0.51 -2.1 533,136 + HMPREF1058_RS17035 0.53 -1.2 533,228 + +0.2 533,231 - HMPREF1058_RS17035 0.61 -3.0 533,274 - HMPREF1058_RS17035 0.65 -4.3 533,274 - HMPREF1058_RS17035 0.65 -4.7 533,280 - HMPREF1058_RS17035 0.66 -4.4 533,499 - HMPREF1058_RS17035 0.86 -2.2
Or see this region's nucleotide sequence