Experiment: Beta-Lactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08050 and HMPREF1058_RS08045 are separated by 5 nucleotides HMPREF1058_RS08045 and HMPREF1058_RS08040 are separated by 132 nucleotides
HMPREF1058_RS08050: HMPREF1058_RS08050 - bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase, at 65,317 to 66,702
_RS08050
HMPREF1058_RS08045: HMPREF1058_RS08045 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 66,708 to 67,748
_RS08045
HMPREF1058_RS08040: HMPREF1058_RS08040 - HD domain-containing protein, at 67,881 to 69,116
_RS08040
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 67.767 kb on - strand at 67.857 kb on - strand at 67.857 kb on - strand at 67.914 kb on + strand at 67.917 kb on + strand at 68.039 kb on + strand, within HMPREF1058_RS08040 at 68.040 kb on - strand, within HMPREF1058_RS08040 at 68.335 kb on + strand, within HMPREF1058_RS08040 at 68.383 kb on - strand, within HMPREF1058_RS08040 at 68.455 kb on + strand, within HMPREF1058_RS08040 at 68.456 kb on - strand, within HMPREF1058_RS08040 at 68.467 kb on + strand, within HMPREF1058_RS08040 at 68.507 kb on - strand, within HMPREF1058_RS08040 at 68.527 kb on - strand, within HMPREF1058_RS08040 at 68.545 kb on - strand, within HMPREF1058_RS08040 at 68.580 kb on - strand, within HMPREF1058_RS08040 at 68.684 kb on - strand, within HMPREF1058_RS08040
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 20 mM (C) remove 67,767 - -0.8 67,857 - -2.6 67,857 - -1.8 67,914 + +1.7 67,917 + -2.0 68,039 + HMPREF1058_RS08040 0.13 -4.2 68,040 - HMPREF1058_RS08040 0.13 -1.1 68,335 + HMPREF1058_RS08040 0.37 +0.4 68,383 - HMPREF1058_RS08040 0.41 +1.7 68,455 + HMPREF1058_RS08040 0.46 +2.0 68,456 - HMPREF1058_RS08040 0.47 -0.9 68,467 + HMPREF1058_RS08040 0.47 -0.3 68,507 - HMPREF1058_RS08040 0.51 -0.5 68,527 - HMPREF1058_RS08040 0.52 +0.8 68,545 - HMPREF1058_RS08040 0.54 -1.0 68,580 - HMPREF1058_RS08040 0.57 +0.0 68,684 - HMPREF1058_RS08040 0.65 +0.0
Or see this region's nucleotide sequence