Experiment: Beta-Lactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08040 and HMPREF1058_RS08035 are separated by 88 nucleotides HMPREF1058_RS08035 and HMPREF1058_RS08030 are separated by 36 nucleotides
HMPREF1058_RS08040: HMPREF1058_RS08040 - HD domain-containing protein, at 67,881 to 69,116
_RS08040
HMPREF1058_RS08035: HMPREF1058_RS08035 - orotidine-5'-phosphate decarboxylase, at 69,205 to 70,023
_RS08035
HMPREF1058_RS08030: HMPREF1058_RS08030 - peptide chain release factor 1, at 70,060 to 71,175
_RS08030
Position (kb) 69
70
71 Strain fitness (log2 ratio) -1
0
1
2 at 68.335 kb on + strand, within HMPREF1058_RS08040 at 68.383 kb on - strand, within HMPREF1058_RS08040 at 68.455 kb on + strand, within HMPREF1058_RS08040 at 68.456 kb on - strand, within HMPREF1058_RS08040 at 68.467 kb on + strand, within HMPREF1058_RS08040 at 68.507 kb on - strand, within HMPREF1058_RS08040 at 68.527 kb on - strand, within HMPREF1058_RS08040 at 68.545 kb on - strand, within HMPREF1058_RS08040 at 68.580 kb on - strand, within HMPREF1058_RS08040 at 68.684 kb on - strand, within HMPREF1058_RS08040 at 68.961 kb on - strand, within HMPREF1058_RS08040 at 68.961 kb on - strand, within HMPREF1058_RS08040 at 69.039 kb on + strand at 69.039 kb on + strand at 69.040 kb on - strand at 69.040 kb on - strand at 69.049 kb on + strand at 69.051 kb on + strand at 69.051 kb on + strand at 69.052 kb on - strand at 69.052 kb on - strand at 69.124 kb on - strand at 69.158 kb on + strand at 69.170 kb on + strand at 69.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 20 mM (C) remove 68,335 + HMPREF1058_RS08040 0.37 +0.4 68,383 - HMPREF1058_RS08040 0.41 +1.7 68,455 + HMPREF1058_RS08040 0.46 +2.0 68,456 - HMPREF1058_RS08040 0.47 -0.9 68,467 + HMPREF1058_RS08040 0.47 -0.3 68,507 - HMPREF1058_RS08040 0.51 -0.5 68,527 - HMPREF1058_RS08040 0.52 +0.8 68,545 - HMPREF1058_RS08040 0.54 -1.0 68,580 - HMPREF1058_RS08040 0.57 +0.0 68,684 - HMPREF1058_RS08040 0.65 +0.0 68,961 - HMPREF1058_RS08040 0.87 +0.1 68,961 - HMPREF1058_RS08040 0.87 -0.4 69,039 + -1.4 69,039 + -0.6 69,040 - -0.1 69,040 - -0.5 69,049 + +0.7 69,051 + -0.4 69,051 + -0.3 69,052 - +0.5 69,052 - -0.6 69,124 - -0.7 69,158 + +0.4 69,170 + -0.9 69,193 + -0.7
Or see this region's nucleotide sequence