Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3171

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3169 and Ga0059261_3170 are separated by 70 nucleotidesGa0059261_3170 and Ga0059261_3171 overlap by 4 nucleotidesGa0059261_3171 and Ga0059261_3172 are separated by 13 nucleotidesGa0059261_3172 and Ga0059261_3173 are separated by 64 nucleotides Ga0059261_3169: Ga0059261_3169 - phosphoglycerate mutase, BPG-dependent, family 1, at 3,305,054 to 3,305,740 _3169 Ga0059261_3170: Ga0059261_3170 - Dienelactone hydrolase and related enzymes, at 3,305,811 to 3,306,536 _3170 Ga0059261_3171: Ga0059261_3171 - Domain of unknown function (DUF4126), at 3,306,533 to 3,307,123 _3171 Ga0059261_3172: Ga0059261_3172 - hypothetical protein, at 3,307,137 to 3,307,769 _3172 Ga0059261_3173: Ga0059261_3173 - adenylosuccinate lyase, at 3,307,834 to 3,309,147 _3173 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -2 -1 0 1at 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.838 kb on + strandat 3305.839 kb on - strandat 3305.839 kb on - strandat 3305.839 kb on - strandat 3305.839 kb on - strandat 3306.009 kb on + strand, within Ga0059261_3170at 3306.009 kb on + strand, within Ga0059261_3170at 3306.009 kb on + strand, within Ga0059261_3170at 3306.009 kb on + strand, within Ga0059261_3170at 3306.009 kb on + strand, within Ga0059261_3170at 3306.009 kb on + strandat 3306.009 kb on + strand, within Ga0059261_3170at 3306.009 kb on + strand, within Ga0059261_3170at 3306.010 kb on - strand, within Ga0059261_3170at 3306.010 kb on - strand, within Ga0059261_3170at 3306.010 kb on - strand, within Ga0059261_3170at 3306.010 kb on - strand, within Ga0059261_3170at 3306.010 kb on - strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on + strand, within Ga0059261_3170at 3306.057 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.058 kb on - strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.059 kb on + strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.060 kb on - strand, within Ga0059261_3170at 3306.171 kb on + strand, within Ga0059261_3170at 3306.172 kb on - strand, within Ga0059261_3170at 3306.172 kb on - strand, within Ga0059261_3170at 3306.202 kb on + strand, within Ga0059261_3170at 3306.267 kb on + strand, within Ga0059261_3170at 3306.267 kb on + strand, within Ga0059261_3170at 3306.267 kb on + strandat 3306.267 kb on + strand, within Ga0059261_3170at 3306.267 kb on + strand, within Ga0059261_3170at 3306.268 kb on - strand, within Ga0059261_3170at 3306.268 kb on - strand, within Ga0059261_3170at 3306.268 kb on - strand, within Ga0059261_3170at 3306.268 kb on - strand, within Ga0059261_3170at 3306.273 kb on + strand, within Ga0059261_3170at 3306.274 kb on - strand, within Ga0059261_3170at 3306.274 kb on - strand, within Ga0059261_3170at 3306.402 kb on + strand, within Ga0059261_3170at 3306.469 kb on - strandat 3306.473 kb on + strandat 3306.473 kb on + strandat 3306.473 kb on + strandat 3306.473 kb on + strandat 3306.473 kb on + strandat 3306.474 kb on - strandat 3306.474 kb on - strandat 3306.474 kb on - strandat 3306.474 kb on - strandat 3306.474 kb on - strandat 3306.474 kb on - strandat 3306.474 kb on - strandat 3306.491 kb on + strandat 3306.491 kb on + strandat 3306.491 kb on + strandat 3306.491 kb on + strandat 3306.492 kb on - strandat 3306.492 kb on - strandat 3306.492 kb on - strandat 3306.492 kb on - strandat 3306.492 kb on - strandat 3306.554 kb on + strandat 3306.554 kb on + strandat 3306.555 kb on - strandat 3306.555 kb on - strandat 3306.563 kb on + strandat 3306.563 kb on + strandat 3306.564 kb on - strandat 3306.564 kb on - strandat 3306.727 kb on + strand, within Ga0059261_3171at 3306.727 kb on + strand, within Ga0059261_3171at 3306.727 kb on + strand, within Ga0059261_3171at 3306.728 kb on - strand, within Ga0059261_3171at 3306.728 kb on - strand, within Ga0059261_3171at 3306.728 kb on - strandat 3306.728 kb on - strand, within Ga0059261_3171at 3306.846 kb on - strand, within Ga0059261_3171at 3306.846 kb on - strand, within Ga0059261_3171at 3306.877 kb on + strand, within Ga0059261_3171at 3306.878 kb on - strand, within Ga0059261_3171at 3306.878 kb on - strand, within Ga0059261_3171at 3306.878 kb on - strand, within Ga0059261_3171at 3306.878 kb on - strand, within Ga0059261_3171at 3307.024 kb on + strand, within Ga0059261_3171at 3307.059 kb on + strand, within Ga0059261_3171at 3307.059 kb on + strand, within Ga0059261_3171at 3307.059 kb on + strand, within Ga0059261_3171at 3307.059 kb on + strand, within Ga0059261_3171at 3307.059 kb on + strand, within Ga0059261_3171at 3307.059 kb on + strand, within Ga0059261_3171at 3307.790 kb on + strandat 3307.790 kb on + strandat 3307.790 kb on + strandat 3307.790 kb on + strandat 3307.791 kb on - strandat 3307.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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3,305,838 + -2.3
3,305,838 + +0.2
3,305,838 + -1.8
3,305,838 + +0.1
3,305,838 + +1.5
3,305,838 + -0.7
3,305,838 + -0.2
3,305,838 + -0.1
3,305,838 + +0.1
3,305,838 + +1.6
3,305,839 - +0.1
3,305,839 - -0.5
3,305,839 - -0.9
3,305,839 - +0.5
3,306,009 + Ga0059261_3170 0.27 -0.5
3,306,009 + Ga0059261_3170 0.27 +0.1
3,306,009 + Ga0059261_3170 0.27 -0.3
3,306,009 + Ga0059261_3170 0.27 +0.6
3,306,009 + Ga0059261_3170 0.27 -0.2
3,306,009 + +1.6
3,306,009 + Ga0059261_3170 0.27 -0.9
3,306,009 + Ga0059261_3170 0.27 +0.0
3,306,010 - Ga0059261_3170 0.27 -0.2
3,306,010 - Ga0059261_3170 0.27 +0.3
3,306,010 - Ga0059261_3170 0.27 +1.0
3,306,010 - Ga0059261_3170 0.27 -0.4
3,306,010 - Ga0059261_3170 0.27 +1.6
3,306,057 + Ga0059261_3170 0.34 +0.3
3,306,057 + Ga0059261_3170 0.34 -0.3
3,306,057 + Ga0059261_3170 0.34 -1.0
3,306,057 + Ga0059261_3170 0.34 -1.0
3,306,057 + Ga0059261_3170 0.34 +0.8
3,306,057 + Ga0059261_3170 0.34 -0.1
3,306,057 + Ga0059261_3170 0.34 -0.1
3,306,057 + Ga0059261_3170 0.34 -0.6
3,306,057 + Ga0059261_3170 0.34 +0.3
3,306,057 + Ga0059261_3170 0.34 +0.7
3,306,057 + Ga0059261_3170 0.34 +0.1
3,306,057 + Ga0059261_3170 0.34 -0.3
3,306,057 - Ga0059261_3170 0.34 -1.2
3,306,058 - Ga0059261_3170 0.34 -0.2
3,306,058 - Ga0059261_3170 0.34 +0.0
3,306,058 - Ga0059261_3170 0.34 -0.6
3,306,058 - Ga0059261_3170 0.34 -0.7
3,306,058 - Ga0059261_3170 0.34 +0.0
3,306,058 - Ga0059261_3170 0.34 -0.5
3,306,058 - Ga0059261_3170 0.34 -0.0
3,306,058 - Ga0059261_3170 0.34 +0.2
3,306,058 - Ga0059261_3170 0.34 -0.3
3,306,058 - Ga0059261_3170 0.34 +0.3
3,306,059 + Ga0059261_3170 0.34 +1.0
3,306,059 + Ga0059261_3170 0.34 -0.1
3,306,059 + Ga0059261_3170 0.34 -0.2
3,306,059 + Ga0059261_3170 0.34 -0.0
3,306,059 + Ga0059261_3170 0.34 +0.2
3,306,059 + Ga0059261_3170 0.34 +0.1
3,306,059 + Ga0059261_3170 0.34 -1.1
3,306,059 + Ga0059261_3170 0.34 +0.1
3,306,059 + Ga0059261_3170 0.34 -0.9
3,306,060 - Ga0059261_3170 0.34 -0.3
3,306,060 - Ga0059261_3170 0.34 +0.0
3,306,060 - Ga0059261_3170 0.34 +1.0
3,306,060 - Ga0059261_3170 0.34 +0.2
3,306,060 - Ga0059261_3170 0.34 -0.0
3,306,060 - Ga0059261_3170 0.34 -0.1
3,306,060 - Ga0059261_3170 0.34 +0.6
3,306,060 - Ga0059261_3170 0.34 +0.1
3,306,171 + Ga0059261_3170 0.50 -0.0
3,306,172 - Ga0059261_3170 0.50 -1.2
3,306,172 - Ga0059261_3170 0.50 -0.0
3,306,202 + Ga0059261_3170 0.54 +1.0
3,306,267 + Ga0059261_3170 0.63 -0.5
3,306,267 + Ga0059261_3170 0.63 -0.3
3,306,267 + +1.0
3,306,267 + Ga0059261_3170 0.63 -0.2
3,306,267 + Ga0059261_3170 0.63 +0.2
3,306,268 - Ga0059261_3170 0.63 -1.1
3,306,268 - Ga0059261_3170 0.63 -0.2
3,306,268 - Ga0059261_3170 0.63 -0.0
3,306,268 - Ga0059261_3170 0.63 -0.1
3,306,273 + Ga0059261_3170 0.64 -0.3
3,306,274 - Ga0059261_3170 0.64 -0.4
3,306,274 - Ga0059261_3170 0.64 -0.3
3,306,402 + Ga0059261_3170 0.81 +0.1
3,306,469 - +0.2
3,306,473 + +1.0
3,306,473 + -0.0
3,306,473 + +0.2
3,306,473 + +1.7
3,306,473 + -0.4
3,306,474 - -0.4
3,306,474 - +0.3
3,306,474 - -0.0
3,306,474 - -0.3
3,306,474 - +0.4
3,306,474 - -0.2
3,306,474 - +0.8
3,306,491 + -1.3
3,306,491 + +1.0
3,306,491 + +0.7
3,306,491 + +1.6
3,306,492 - -1.2
3,306,492 - +0.7
3,306,492 - +0.3
3,306,492 - +0.5
3,306,492 - -0.2
3,306,554 + +0.5
3,306,554 + -0.1
3,306,555 - +0.6
3,306,555 - +0.6
3,306,563 + +0.3
3,306,563 + +0.0
3,306,564 - -0.3
3,306,564 - -0.6
3,306,727 + Ga0059261_3171 0.33 +0.1
3,306,727 + Ga0059261_3171 0.33 +0.1
3,306,727 + Ga0059261_3171 0.33 +0.8
3,306,728 - Ga0059261_3171 0.33 -0.6
3,306,728 - Ga0059261_3171 0.33 -0.5
3,306,728 - -1.0
3,306,728 - Ga0059261_3171 0.33 +0.1
3,306,846 - Ga0059261_3171 0.53 +0.7
3,306,846 - Ga0059261_3171 0.53 +1.3
3,306,877 + Ga0059261_3171 0.58 -0.0
3,306,878 - Ga0059261_3171 0.58 +0.0
3,306,878 - Ga0059261_3171 0.58 +0.5
3,306,878 - Ga0059261_3171 0.58 -0.4
3,306,878 - Ga0059261_3171 0.58 +0.0
3,307,024 + Ga0059261_3171 0.83 +0.7
3,307,059 + Ga0059261_3171 0.89 +0.5
3,307,059 + Ga0059261_3171 0.89 -1.1
3,307,059 + Ga0059261_3171 0.89 +0.1
3,307,059 + Ga0059261_3171 0.89 +1.4
3,307,059 + Ga0059261_3171 0.89 +0.3
3,307,059 + Ga0059261_3171 0.89 +0.1
3,307,790 + -0.3
3,307,790 + -0.2
3,307,790 + -1.2
3,307,790 + +0.3
3,307,791 - +0.7
3,307,807 - +1.0

Or see this region's nucleotide sequence