Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3132

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3131 and Ga0059261_3132 are separated by 252 nucleotidesGa0059261_3132 and Ga0059261_3133 overlap by 4 nucleotides Ga0059261_3131: Ga0059261_3131 - Nucleoside-diphosphate-sugar epimerases, at 3,273,640 to 3,274,662 _3131 Ga0059261_3132: Ga0059261_3132 - hypothetical protein, at 3,274,915 to 3,275,436 _3132 Ga0059261_3133: Ga0059261_3133 - UTP--glucose-1-phosphate uridylyltransferase, at 3,275,433 to 3,276,311 _3133 Position (kb) 3274 3275 3276Strain fitness (log2 ratio) -1 0 1at 3274.669 kb on - strandat 3274.694 kb on - strandat 3274.694 kb on - strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.750 kb on + strandat 3274.751 kb on - strandat 3274.751 kb on - strandat 3274.751 kb on - strandat 3274.751 kb on - strandat 3274.826 kb on - strandat 3274.933 kb on + strandat 3274.934 kb on - strandat 3274.934 kb on - strandat 3274.934 kb on - strandat 3275.062 kb on + strand, within Ga0059261_3132at 3275.062 kb on + strand, within Ga0059261_3132at 3275.147 kb on - strand, within Ga0059261_3132at 3275.181 kb on - strand, within Ga0059261_3132at 3275.233 kb on + strand, within Ga0059261_3132at 3275.234 kb on - strand, within Ga0059261_3132at 3275.281 kb on - strand, within Ga0059261_3132at 3275.281 kb on - strand, within Ga0059261_3132at 3275.281 kb on - strand, within Ga0059261_3132at 3275.350 kb on + strand, within Ga0059261_3132at 3275.351 kb on - strand, within Ga0059261_3132at 3275.351 kb on - strand, within Ga0059261_3132at 3275.351 kb on - strand, within Ga0059261_3132at 3276.309 kb on + strandat 3276.330 kb on - strandat 3276.330 kb on - strandat 3276.368 kb on - strandat 3276.371 kb on + strandat 3276.372 kb on - strandat 3276.405 kb on + strandat 3276.405 kb on + strandat 3276.406 kb on - strandat 3276.406 kb on - strandat 3276.422 kb on + strandat 3276.423 kb on - strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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3,274,669 - -0.1
3,274,694 - +0.4
3,274,694 - +1.0
3,274,750 + +0.6
3,274,750 + -0.4
3,274,750 + -0.7
3,274,750 + +0.1
3,274,750 + -0.1
3,274,750 + +0.1
3,274,750 + -0.2
3,274,750 + +0.1
3,274,750 + -0.6
3,274,751 - +0.0
3,274,751 - -0.3
3,274,751 - -0.3
3,274,751 - +0.3
3,274,826 - +0.3
3,274,933 + -0.3
3,274,934 - +0.3
3,274,934 - -1.2
3,274,934 - +0.0
3,275,062 + Ga0059261_3132 0.28 -0.4
3,275,062 + Ga0059261_3132 0.28 -0.0
3,275,147 - Ga0059261_3132 0.44 -0.1
3,275,181 - Ga0059261_3132 0.51 +0.4
3,275,233 + Ga0059261_3132 0.61 -0.5
3,275,234 - Ga0059261_3132 0.61 +1.6
3,275,281 - Ga0059261_3132 0.70 +0.0
3,275,281 - Ga0059261_3132 0.70 +0.6
3,275,281 - Ga0059261_3132 0.70 +0.2
3,275,350 + Ga0059261_3132 0.83 +0.3
3,275,351 - Ga0059261_3132 0.84 +0.5
3,275,351 - Ga0059261_3132 0.84 +0.3
3,275,351 - Ga0059261_3132 0.84 +0.1
3,276,309 + -0.8
3,276,330 - +0.1
3,276,330 - +1.2
3,276,368 - +0.5
3,276,371 + -0.5
3,276,372 - -0.1
3,276,405 + +0.4
3,276,405 + -0.0
3,276,406 - -0.3
3,276,406 - -0.4
3,276,422 + -0.2
3,276,423 - -0.1
3,276,429 + -0.2
3,276,429 + -0.0
3,276,429 + -0.2
3,276,429 + -0.7
3,276,429 + +0.1

Or see this region's nucleotide sequence