Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1536

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1533 and Ga0059261_1534 are separated by 61 nucleotidesGa0059261_1534 and Ga0059261_1535 overlap by 4 nucleotidesGa0059261_1535 and Ga0059261_1536 are separated by 19 nucleotidesGa0059261_1536 and Ga0059261_1537 are separated by 136 nucleotidesGa0059261_1537 and Ga0059261_1538 are separated by 103 nucleotidesGa0059261_1538 and Ga0059261_1539 overlap by 14 nucleotides Ga0059261_1533: Ga0059261_1533 - conserved hypothetical integral membrane protein, at 1,610,242 to 1,610,964 _1533 Ga0059261_1534: Ga0059261_1534 - Uncharacterized conserved protein, at 1,611,026 to 1,611,487 _1534 Ga0059261_1535: Ga0059261_1535 - Predicted transcriptional regulators, at 1,611,484 to 1,611,816 _1535 Ga0059261_1536: Ga0059261_1536 - Glutathione S-transferase, at 1,611,836 to 1,612,516 _1536 Ga0059261_1537: Ga0059261_1537 - tRNA, at 1,612,653 to 1,612,729 _1537 Ga0059261_1538: Ga0059261_1538 - Predicted transcriptional regulators, at 1,612,833 to 1,613,177 _1538 Ga0059261_1539: Ga0059261_1539 - Uncharacterized conserved protein, at 1,613,164 to 1,613,637 _1539 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -2 -1 0 1at 1610.897 kb on + strandat 1610.897 kb on + strandat 1610.898 kb on - strandat 1610.898 kb on - strandat 1610.898 kb on - strandat 1610.901 kb on - strandat 1610.992 kb on + strandat 1610.992 kb on + strandat 1610.992 kb on + strandat 1610.992 kb on + strandat 1610.992 kb on + strandat 1610.993 kb on - strandat 1611.225 kb on + strand, within Ga0059261_1534at 1611.225 kb on + strand, within Ga0059261_1534at 1611.225 kb on + strand, within Ga0059261_1534at 1611.225 kb on + strandat 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.226 kb on - strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.231 kb on + strand, within Ga0059261_1534at 1611.232 kb on - strand, within Ga0059261_1534at 1611.232 kb on - strand, within Ga0059261_1534at 1611.232 kb on - strand, within Ga0059261_1534at 1611.232 kb on - strand, within Ga0059261_1534at 1611.232 kb on - strand, within Ga0059261_1534at 1611.232 kb on - strandat 1611.232 kb on - strand, within Ga0059261_1534at 1611.264 kb on + strand, within Ga0059261_1534at 1611.601 kb on - strand, within Ga0059261_1535at 1611.601 kb on - strand, within Ga0059261_1535at 1611.601 kb on - strand, within Ga0059261_1535at 1611.601 kb on - strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.608 kb on + strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.609 kb on - strand, within Ga0059261_1535at 1611.612 kb on + strand, within Ga0059261_1535at 1611.612 kb on + strand, within Ga0059261_1535at 1611.612 kb on + strand, within Ga0059261_1535at 1611.612 kb on + strand, within Ga0059261_1535at 1611.612 kb on + strand, within Ga0059261_1535at 1611.613 kb on - strand, within Ga0059261_1535at 1611.613 kb on - strand, within Ga0059261_1535at 1611.613 kb on - strand, within Ga0059261_1535at 1611.613 kb on - strand, within Ga0059261_1535at 1611.613 kb on - strand, within Ga0059261_1535at 1611.613 kb on - strand, within Ga0059261_1535at 1611.849 kb on + strandat 1611.850 kb on - strandat 1611.850 kb on - strandat 1611.951 kb on + strand, within Ga0059261_1536at 1611.951 kb on + strand, within Ga0059261_1536at 1611.951 kb on + strand, within Ga0059261_1536at 1611.951 kb on + strand, within Ga0059261_1536at 1611.951 kb on + strand, within Ga0059261_1536at 1611.951 kb on + strand, within Ga0059261_1536at 1611.952 kb on - strand, within Ga0059261_1536at 1611.952 kb on - strand, within Ga0059261_1536at 1611.952 kb on - strand, within Ga0059261_1536at 1612.095 kb on + strand, within Ga0059261_1536at 1612.096 kb on - strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.200 kb on + strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.201 kb on - strand, within Ga0059261_1536at 1612.296 kb on + strand, within Ga0059261_1536at 1612.296 kb on + strand, within Ga0059261_1536at 1612.296 kb on + strand, within Ga0059261_1536at 1612.297 kb on - strandat 1612.297 kb on - strand, within Ga0059261_1536at 1612.297 kb on - strand, within Ga0059261_1536at 1612.297 kb on - strand, within Ga0059261_1536at 1612.297 kb on - strand, within Ga0059261_1536at 1612.452 kb on + strandat 1612.500 kb on + strandat 1612.501 kb on - strandat 1612.507 kb on + strandat 1612.507 kb on + strandat 1612.507 kb on + strandat 1612.508 kb on - strandat 1612.508 kb on - strandat 1612.508 kb on - strandat 1612.508 kb on - strandat 1612.508 kb on - strandat 1612.508 kb on - strandat 1612.529 kb on - strandat 1612.593 kb on + strandat 1613.109 kb on + strand, within Ga0059261_1538at 1613.109 kb on + strand, within Ga0059261_1538at 1613.109 kb on + strand, within Ga0059261_1538at 1613.109 kb on + strand, within Ga0059261_1538at 1613.109 kb on + strand, within Ga0059261_1538at 1613.110 kb on - strand, within Ga0059261_1538at 1613.110 kb on - strand, within Ga0059261_1538at 1613.245 kb on + strand, within Ga0059261_1539at 1613.246 kb on - strand, within Ga0059261_1539at 1613.246 kb on - strand, within Ga0059261_1539at 1613.246 kb on - strand, within Ga0059261_1539at 1613.353 kb on + strand, within Ga0059261_1539at 1613.401 kb on + strand, within Ga0059261_1539at 1613.401 kb on + strand, within Ga0059261_1539at 1613.401 kb on + strand, within Ga0059261_1539at 1613.401 kb on + strand, within Ga0059261_1539at 1613.401 kb on + strand, within Ga0059261_1539at 1613.402 kb on - strand, within Ga0059261_1539at 1613.402 kb on - strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.403 kb on + strand, within Ga0059261_1539at 1613.404 kb on - strand, within Ga0059261_1539at 1613.404 kb on - strand, within Ga0059261_1539

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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1,610,897 + +0.2
1,610,897 + -0.1
1,610,898 - -0.0
1,610,898 - +1.4
1,610,898 - +0.1
1,610,901 - -0.5
1,610,992 + -0.4
1,610,992 + -0.2
1,610,992 + +0.4
1,610,992 + -0.4
1,610,992 + -0.3
1,610,993 - +0.3
1,611,225 + Ga0059261_1534 0.43 +0.1
1,611,225 + Ga0059261_1534 0.43 +0.1
1,611,225 + Ga0059261_1534 0.43 -0.1
1,611,225 + -0.6
1,611,226 - Ga0059261_1534 0.43 -0.1
1,611,226 - Ga0059261_1534 0.43 +0.9
1,611,226 - Ga0059261_1534 0.43 +0.6
1,611,226 - Ga0059261_1534 0.43 -0.1
1,611,226 - Ga0059261_1534 0.43 -1.1
1,611,226 - Ga0059261_1534 0.43 -1.1
1,611,226 - Ga0059261_1534 0.43 -0.5
1,611,226 - Ga0059261_1534 0.43 +0.5
1,611,226 - Ga0059261_1534 0.43 -0.2
1,611,226 - Ga0059261_1534 0.43 -0.5
1,611,231 + Ga0059261_1534 0.44 +0.6
1,611,231 + Ga0059261_1534 0.44 +0.2
1,611,231 + Ga0059261_1534 0.44 -0.3
1,611,231 + Ga0059261_1534 0.44 +0.0
1,611,231 + Ga0059261_1534 0.44 -0.0
1,611,231 + Ga0059261_1534 0.44 +0.1
1,611,231 + Ga0059261_1534 0.44 -0.8
1,611,231 + Ga0059261_1534 0.44 +0.5
1,611,231 + Ga0059261_1534 0.44 -1.0
1,611,231 + Ga0059261_1534 0.44 -0.2
1,611,231 + Ga0059261_1534 0.44 -0.8
1,611,232 - Ga0059261_1534 0.45 +0.4
1,611,232 - Ga0059261_1534 0.45 -0.1
1,611,232 - Ga0059261_1534 0.45 -0.6
1,611,232 - Ga0059261_1534 0.45 +0.0
1,611,232 - Ga0059261_1534 0.45 -0.3
1,611,232 - +0.2
1,611,232 - Ga0059261_1534 0.45 -0.5
1,611,264 + Ga0059261_1534 0.52 +0.7
1,611,601 - Ga0059261_1535 0.35 +0.3
1,611,601 - Ga0059261_1535 0.35 +0.2
1,611,601 - Ga0059261_1535 0.35 +0.2
1,611,601 - Ga0059261_1535 0.35 +0.4
1,611,608 + Ga0059261_1535 0.37 -0.8
1,611,608 + Ga0059261_1535 0.37 -0.3
1,611,608 + Ga0059261_1535 0.37 -0.2
1,611,608 + Ga0059261_1535 0.37 +1.4
1,611,608 + Ga0059261_1535 0.37 -0.2
1,611,608 + Ga0059261_1535 0.37 -1.0
1,611,608 + Ga0059261_1535 0.37 +0.2
1,611,608 + Ga0059261_1535 0.37 -0.9
1,611,608 + Ga0059261_1535 0.37 +0.1
1,611,609 - Ga0059261_1535 0.38 +1.2
1,611,609 - Ga0059261_1535 0.38 -0.8
1,611,609 - Ga0059261_1535 0.38 +0.6
1,611,609 - Ga0059261_1535 0.38 -0.5
1,611,609 - Ga0059261_1535 0.38 -0.9
1,611,609 - Ga0059261_1535 0.38 -0.2
1,611,609 - Ga0059261_1535 0.38 -0.7
1,611,609 - Ga0059261_1535 0.38 -0.2
1,611,609 - Ga0059261_1535 0.38 +0.2
1,611,612 + Ga0059261_1535 0.38 +0.5
1,611,612 + Ga0059261_1535 0.38 +0.9
1,611,612 + Ga0059261_1535 0.38 -1.6
1,611,612 + Ga0059261_1535 0.38 +0.6
1,611,612 + Ga0059261_1535 0.38 +0.9
1,611,613 - Ga0059261_1535 0.39 -0.3
1,611,613 - Ga0059261_1535 0.39 -0.6
1,611,613 - Ga0059261_1535 0.39 +0.3
1,611,613 - Ga0059261_1535 0.39 +0.5
1,611,613 - Ga0059261_1535 0.39 -0.0
1,611,613 - Ga0059261_1535 0.39 +0.3
1,611,849 + +0.3
1,611,850 - +0.4
1,611,850 - -0.7
1,611,951 + Ga0059261_1536 0.17 -0.4
1,611,951 + Ga0059261_1536 0.17 +0.5
1,611,951 + Ga0059261_1536 0.17 +0.9
1,611,951 + Ga0059261_1536 0.17 +0.6
1,611,951 + Ga0059261_1536 0.17 +0.2
1,611,951 + Ga0059261_1536 0.17 +0.2
1,611,952 - Ga0059261_1536 0.17 -0.4
1,611,952 - Ga0059261_1536 0.17 +0.2
1,611,952 - Ga0059261_1536 0.17 +0.5
1,612,095 + Ga0059261_1536 0.38 -0.1
1,612,096 - Ga0059261_1536 0.38 +0.4
1,612,200 + Ga0059261_1536 0.53 -0.4
1,612,200 + Ga0059261_1536 0.53 +1.4
1,612,200 + Ga0059261_1536 0.53 +0.3
1,612,200 + Ga0059261_1536 0.53 +0.4
1,612,200 + Ga0059261_1536 0.53 -1.2
1,612,200 + Ga0059261_1536 0.53 +0.4
1,612,200 + Ga0059261_1536 0.53 +0.9
1,612,200 + Ga0059261_1536 0.53 +1.2
1,612,200 + Ga0059261_1536 0.53 +0.2
1,612,200 + Ga0059261_1536 0.53 -0.2
1,612,200 + Ga0059261_1536 0.53 +0.4
1,612,200 + Ga0059261_1536 0.53 -0.6
1,612,201 - Ga0059261_1536 0.54 -0.1
1,612,201 - Ga0059261_1536 0.54 +0.4
1,612,201 - Ga0059261_1536 0.54 +0.7
1,612,201 - Ga0059261_1536 0.54 +0.2
1,612,201 - Ga0059261_1536 0.54 -1.2
1,612,201 - Ga0059261_1536 0.54 +0.2
1,612,201 - Ga0059261_1536 0.54 -0.6
1,612,201 - Ga0059261_1536 0.54 -0.5
1,612,296 + Ga0059261_1536 0.68 -0.2
1,612,296 + Ga0059261_1536 0.68 +0.4
1,612,296 + Ga0059261_1536 0.68 +0.9
1,612,297 - -0.4
1,612,297 - Ga0059261_1536 0.68 +1.2
1,612,297 - Ga0059261_1536 0.68 +0.1
1,612,297 - Ga0059261_1536 0.68 -1.8
1,612,297 - Ga0059261_1536 0.68 +0.3
1,612,452 + -0.6
1,612,500 + +0.3
1,612,501 - -1.2
1,612,507 + -0.6
1,612,507 + -1.1
1,612,507 + -0.2
1,612,508 - +0.2
1,612,508 - +0.1
1,612,508 - -0.2
1,612,508 - -1.5
1,612,508 - +0.5
1,612,508 - -0.2
1,612,529 - -0.6
1,612,593 + -0.1
1,613,109 + Ga0059261_1538 0.80 +0.9
1,613,109 + Ga0059261_1538 0.80 -0.2
1,613,109 + Ga0059261_1538 0.80 +0.5
1,613,109 + Ga0059261_1538 0.80 +0.6
1,613,109 + Ga0059261_1538 0.80 -0.9
1,613,110 - Ga0059261_1538 0.80 +0.2
1,613,110 - Ga0059261_1538 0.80 -0.1
1,613,245 + Ga0059261_1539 0.17 -1.0
1,613,246 - Ga0059261_1539 0.17 +0.0
1,613,246 - Ga0059261_1539 0.17 -0.2
1,613,246 - Ga0059261_1539 0.17 -0.2
1,613,353 + Ga0059261_1539 0.40 -0.0
1,613,401 + Ga0059261_1539 0.50 +0.6
1,613,401 + Ga0059261_1539 0.50 -0.5
1,613,401 + Ga0059261_1539 0.50 +0.6
1,613,401 + Ga0059261_1539 0.50 +0.9
1,613,401 + Ga0059261_1539 0.50 +0.0
1,613,402 - Ga0059261_1539 0.50 -0.6
1,613,402 - Ga0059261_1539 0.50 +0.2
1,613,403 + Ga0059261_1539 0.50 -0.8
1,613,403 + Ga0059261_1539 0.50 -0.2
1,613,403 + Ga0059261_1539 0.50 +0.6
1,613,403 + Ga0059261_1539 0.50 -0.1
1,613,403 + Ga0059261_1539 0.50 -0.2
1,613,403 + Ga0059261_1539 0.50 +0.7
1,613,403 + Ga0059261_1539 0.50 -0.6
1,613,404 - Ga0059261_1539 0.51 -0.2
1,613,404 - Ga0059261_1539 0.51 -0.2

Or see this region's nucleotide sequence