Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1143

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1141 and Ga0059261_1142 overlap by 4 nucleotidesGa0059261_1142 and Ga0059261_1143 are separated by 141 nucleotidesGa0059261_1143 and Ga0059261_1144 are separated by 34 nucleotidesGa0059261_1144 and Ga0059261_1145 are separated by 2 nucleotides Ga0059261_1141: Ga0059261_1141 - flagellar motor switch protein FliM, at 1,166,435 to 1,167,454 _1141 Ga0059261_1142: Ga0059261_1142 - Flagellar basal body-associated protein, at 1,167,451 to 1,167,963 _1142 Ga0059261_1143: Ga0059261_1143 - flagellar hook-basal body protein, at 1,168,105 to 1,168,848 _1143 Ga0059261_1144: Ga0059261_1144 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 1,168,883 to 1,169,668 _1144 Ga0059261_1145: Ga0059261_1145 - flagella basal body P-ring formation protein FlgA, at 1,169,671 to 1,170,111 _1145 Position (kb) 1168 1169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1167.282 kb on + strand, within Ga0059261_1141at 1167.282 kb on + strand, within Ga0059261_1141at 1167.282 kb on + strand, within Ga0059261_1141at 1167.282 kb on + strand, within Ga0059261_1141at 1167.282 kb on + strand, within Ga0059261_1141at 1167.282 kb on + strand, within Ga0059261_1141at 1167.282 kb on + strand, within Ga0059261_1141at 1167.283 kb on - strandat 1167.283 kb on - strand, within Ga0059261_1141at 1167.283 kb on - strand, within Ga0059261_1141at 1167.283 kb on - strand, within Ga0059261_1141at 1167.283 kb on - strand, within Ga0059261_1141at 1167.283 kb on - strand, within Ga0059261_1141at 1167.516 kb on + strand, within Ga0059261_1142at 1167.516 kb on + strand, within Ga0059261_1142at 1167.517 kb on - strand, within Ga0059261_1142at 1167.517 kb on - strand, within Ga0059261_1142at 1167.517 kb on - strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.636 kb on + strand, within Ga0059261_1142at 1167.637 kb on - strand, within Ga0059261_1142at 1167.637 kb on - strand, within Ga0059261_1142at 1167.746 kb on + strand, within Ga0059261_1142at 1167.746 kb on + strand, within Ga0059261_1142at 1167.746 kb on + strand, within Ga0059261_1142at 1167.746 kb on + strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.747 kb on - strand, within Ga0059261_1142at 1167.748 kb on - strand, within Ga0059261_1142at 1167.922 kb on + strandat 1167.923 kb on - strandat 1167.961 kb on - strandat 1167.995 kb on + strandat 1167.995 kb on + strandat 1167.996 kb on - strandat 1167.996 kb on - strandat 1167.996 kb on - strandat 1168.032 kb on + strandat 1168.032 kb on + strandat 1168.032 kb on + strandat 1168.033 kb on - strandat 1168.033 kb on - strandat 1168.035 kb on + strandat 1168.037 kb on + strandat 1168.037 kb on + strandat 1168.037 kb on + strandat 1168.038 kb on - strandat 1168.038 kb on - strandat 1168.065 kb on - strandat 1168.075 kb on - strandat 1168.234 kb on + strand, within Ga0059261_1143at 1168.235 kb on - strand, within Ga0059261_1143at 1168.235 kb on - strand, within Ga0059261_1143at 1168.235 kb on - strand, within Ga0059261_1143at 1168.297 kb on + strand, within Ga0059261_1143at 1168.297 kb on + strand, within Ga0059261_1143at 1168.298 kb on - strand, within Ga0059261_1143at 1168.379 kb on - strand, within Ga0059261_1143at 1168.415 kb on - strand, within Ga0059261_1143at 1168.415 kb on - strand, within Ga0059261_1143at 1168.415 kb on - strand, within Ga0059261_1143at 1168.416 kb on + strandat 1168.416 kb on + strand, within Ga0059261_1143at 1168.417 kb on - strand, within Ga0059261_1143at 1168.431 kb on + strand, within Ga0059261_1143at 1168.432 kb on - strand, within Ga0059261_1143at 1168.432 kb on - strand, within Ga0059261_1143at 1168.432 kb on - strand, within Ga0059261_1143at 1168.768 kb on + strand, within Ga0059261_1143at 1168.768 kb on + strand, within Ga0059261_1143at 1168.768 kb on + strand, within Ga0059261_1143at 1168.768 kb on + strand, within Ga0059261_1143at 1168.768 kb on + strand, within Ga0059261_1143at 1168.768 kb on + strand, within Ga0059261_1143at 1168.769 kb on - strand, within Ga0059261_1143at 1168.769 kb on - strand, within Ga0059261_1143at 1168.769 kb on - strand, within Ga0059261_1143at 1168.888 kb on + strandat 1168.888 kb on + strandat 1168.888 kb on + strandat 1168.888 kb on + strandat 1168.889 kb on - strandat 1168.889 kb on - strandat 1168.889 kb on - strandat 1168.889 kb on - strandat 1168.889 kb on - strandat 1169.015 kb on + strand, within Ga0059261_1144at 1169.015 kb on + strand, within Ga0059261_1144at 1169.015 kb on + strand, within Ga0059261_1144at 1169.016 kb on - strand, within Ga0059261_1144at 1169.016 kb on - strand, within Ga0059261_1144at 1169.016 kb on - strand, within Ga0059261_1144at 1169.114 kb on + strand, within Ga0059261_1144at 1169.114 kb on + strand, within Ga0059261_1144at 1169.114 kb on + strand, within Ga0059261_1144at 1169.115 kb on - strand, within Ga0059261_1144at 1169.115 kb on - strand, within Ga0059261_1144at 1169.160 kb on - strand, within Ga0059261_1144at 1169.186 kb on + strand, within Ga0059261_1144at 1169.187 kb on - strand, within Ga0059261_1144at 1169.222 kb on + strand, within Ga0059261_1144at 1169.222 kb on + strand, within Ga0059261_1144at 1169.223 kb on - strand, within Ga0059261_1144at 1169.223 kb on - strand, within Ga0059261_1144at 1169.223 kb on - strand, within Ga0059261_1144at 1169.224 kb on + strand, within Ga0059261_1144at 1169.224 kb on + strand, within Ga0059261_1144at 1169.224 kb on + strand, within Ga0059261_1144at 1169.225 kb on - strand, within Ga0059261_1144at 1169.225 kb on - strand, within Ga0059261_1144at 1169.225 kb on - strand, within Ga0059261_1144at 1169.225 kb on - strand, within Ga0059261_1144at 1169.225 kb on - strand, within Ga0059261_1144at 1169.225 kb on - strand, within Ga0059261_1144at 1169.600 kb on + strandat 1169.600 kb on + strandat 1169.601 kb on - strandat 1169.601 kb on - strandat 1169.601 kb on - strandat 1169.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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1,167,282 + Ga0059261_1141 0.83 -0.8
1,167,282 + Ga0059261_1141 0.83 -0.0
1,167,282 + Ga0059261_1141 0.83 +0.2
1,167,282 + Ga0059261_1141 0.83 -0.4
1,167,282 + Ga0059261_1141 0.83 +1.1
1,167,282 + Ga0059261_1141 0.83 -0.7
1,167,282 + Ga0059261_1141 0.83 +0.5
1,167,283 - +0.1
1,167,283 - Ga0059261_1141 0.83 -1.0
1,167,283 - Ga0059261_1141 0.83 -0.2
1,167,283 - Ga0059261_1141 0.83 -0.0
1,167,283 - Ga0059261_1141 0.83 +1.0
1,167,283 - Ga0059261_1141 0.83 +0.7
1,167,516 + Ga0059261_1142 0.13 +0.9
1,167,516 + Ga0059261_1142 0.13 -0.1
1,167,517 - Ga0059261_1142 0.13 +0.3
1,167,517 - Ga0059261_1142 0.13 +0.3
1,167,517 - Ga0059261_1142 0.13 -0.2
1,167,636 + Ga0059261_1142 0.36 +0.1
1,167,636 + Ga0059261_1142 0.36 -0.2
1,167,636 + Ga0059261_1142 0.36 +0.1
1,167,636 + Ga0059261_1142 0.36 -0.8
1,167,636 + Ga0059261_1142 0.36 -0.1
1,167,636 + Ga0059261_1142 0.36 +0.4
1,167,636 + Ga0059261_1142 0.36 +0.9
1,167,637 - Ga0059261_1142 0.36 +0.3
1,167,637 - Ga0059261_1142 0.36 +0.4
1,167,746 + Ga0059261_1142 0.58 -1.1
1,167,746 + Ga0059261_1142 0.58 -0.3
1,167,746 + Ga0059261_1142 0.58 -0.3
1,167,746 + Ga0059261_1142 0.58 +0.5
1,167,747 - Ga0059261_1142 0.58 -0.4
1,167,747 - Ga0059261_1142 0.58 +0.1
1,167,747 - Ga0059261_1142 0.58 -0.5
1,167,747 - Ga0059261_1142 0.58 +0.5
1,167,747 - Ga0059261_1142 0.58 +0.2
1,167,747 - Ga0059261_1142 0.58 -0.6
1,167,747 - Ga0059261_1142 0.58 -0.3
1,167,747 - Ga0059261_1142 0.58 -0.9
1,167,748 - Ga0059261_1142 0.58 +0.5
1,167,922 + +0.1
1,167,923 - +0.3
1,167,961 - +1.5
1,167,995 + -0.2
1,167,995 + -0.2
1,167,996 - +0.1
1,167,996 - -0.7
1,167,996 - +0.2
1,168,032 + -0.4
1,168,032 + -1.1
1,168,032 + -0.1
1,168,033 - -0.8
1,168,033 - -0.4
1,168,035 + -1.4
1,168,037 + +0.7
1,168,037 + -0.0
1,168,037 + -0.3
1,168,038 - +0.6
1,168,038 - -1.5
1,168,065 - +0.3
1,168,075 - +1.9
1,168,234 + Ga0059261_1143 0.17 +1.3
1,168,235 - Ga0059261_1143 0.17 -0.6
1,168,235 - Ga0059261_1143 0.17 +0.0
1,168,235 - Ga0059261_1143 0.17 -0.4
1,168,297 + Ga0059261_1143 0.26 +0.1
1,168,297 + Ga0059261_1143 0.26 -0.6
1,168,298 - Ga0059261_1143 0.26 +0.2
1,168,379 - Ga0059261_1143 0.37 -0.7
1,168,415 - Ga0059261_1143 0.42 +0.4
1,168,415 - Ga0059261_1143 0.42 +0.4
1,168,415 - Ga0059261_1143 0.42 +0.7
1,168,416 + +1.9
1,168,416 + Ga0059261_1143 0.42 -0.0
1,168,417 - Ga0059261_1143 0.42 +0.3
1,168,431 + Ga0059261_1143 0.44 -0.7
1,168,432 - Ga0059261_1143 0.44 +0.5
1,168,432 - Ga0059261_1143 0.44 +1.3
1,168,432 - Ga0059261_1143 0.44 +0.6
1,168,768 + Ga0059261_1143 0.89 +0.1
1,168,768 + Ga0059261_1143 0.89 +0.2
1,168,768 + Ga0059261_1143 0.89 +0.2
1,168,768 + Ga0059261_1143 0.89 +0.5
1,168,768 + Ga0059261_1143 0.89 +0.1
1,168,768 + Ga0059261_1143 0.89 +0.1
1,168,769 - Ga0059261_1143 0.89 -0.3
1,168,769 - Ga0059261_1143 0.89 +0.6
1,168,769 - Ga0059261_1143 0.89 -0.4
1,168,888 + +0.3
1,168,888 + +0.5
1,168,888 + -0.4
1,168,888 + -1.2
1,168,889 - +0.2
1,168,889 - +0.4
1,168,889 - -0.3
1,168,889 - -0.1
1,168,889 - -0.1
1,169,015 + Ga0059261_1144 0.17 +0.7
1,169,015 + Ga0059261_1144 0.17 -0.1
1,169,015 + Ga0059261_1144 0.17 +0.7
1,169,016 - Ga0059261_1144 0.17 +0.1
1,169,016 - Ga0059261_1144 0.17 +0.1
1,169,016 - Ga0059261_1144 0.17 -0.7
1,169,114 + Ga0059261_1144 0.29 +0.6
1,169,114 + Ga0059261_1144 0.29 +0.5
1,169,114 + Ga0059261_1144 0.29 +0.7
1,169,115 - Ga0059261_1144 0.30 -0.8
1,169,115 - Ga0059261_1144 0.30 +0.1
1,169,160 - Ga0059261_1144 0.35 +0.3
1,169,186 + Ga0059261_1144 0.39 +0.8
1,169,187 - Ga0059261_1144 0.39 -0.0
1,169,222 + Ga0059261_1144 0.43 -0.8
1,169,222 + Ga0059261_1144 0.43 +0.3
1,169,223 - Ga0059261_1144 0.43 +0.0
1,169,223 - Ga0059261_1144 0.43 +0.5
1,169,223 - Ga0059261_1144 0.43 +0.7
1,169,224 + Ga0059261_1144 0.43 -1.0
1,169,224 + Ga0059261_1144 0.43 -0.1
1,169,224 + Ga0059261_1144 0.43 -0.2
1,169,225 - Ga0059261_1144 0.44 +0.4
1,169,225 - Ga0059261_1144 0.44 -0.5
1,169,225 - Ga0059261_1144 0.44 +0.8
1,169,225 - Ga0059261_1144 0.44 +0.5
1,169,225 - Ga0059261_1144 0.44 -0.2
1,169,225 - Ga0059261_1144 0.44 -2.8
1,169,600 + +0.6
1,169,600 + +0.2
1,169,601 - +0.2
1,169,601 - -0.9
1,169,601 - -0.2
1,169,601 - +0.5

Or see this region's nucleotide sequence