Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0926 and Ga0059261_0927 are separated by 94 nucleotides Ga0059261_0927 and Ga0059261_0928 are separated by 64 nucleotides Ga0059261_0928 and Ga0059261_0929 are separated by 131 nucleotides Ga0059261_0929 and Ga0059261_0930 overlap by 4 nucleotides Ga0059261_0930 and Ga0059261_0931 overlap by 4 nucleotides
Ga0059261_0926: Ga0059261_0926 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 959,435 to 960,019
_0926
Ga0059261_0927: Ga0059261_0927 - Domain of unknown function (DUF333), at 960,114 to 960,347
_0927
Ga0059261_0928: Ga0059261_0928 - Glyoxalase-like domain, at 960,412 to 960,789
_0928
Ga0059261_0929: Ga0059261_0929 - anthranilate phosphoribosyltransferase, at 960,921 to 961,916
_0929
Ga0059261_0930: Ga0059261_0930 - indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 961,913 to 962,695
_0930
Ga0059261_0931: Ga0059261_0931 - molybdenum cofactor biosynthesis protein MoaC, at 962,692 to 963,168
_0931
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 959.986 kb on + strand at 959.986 kb on + strand at 960.039 kb on - strand at 960.039 kb on - strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.063 kb on + strand at 960.064 kb on - strand at 960.064 kb on - strand at 960.064 kb on - strand at 960.064 kb on - strand at 960.064 kb on - strand at 960.123 kb on - strand at 960.123 kb on - strand at 960.351 kb on + strand at 960.351 kb on + strand at 960.351 kb on + strand at 960.352 kb on - strand at 960.524 kb on + strand, within Ga0059261_0928 at 960.524 kb on + strand, within Ga0059261_0928 at 960.525 kb on - strand, within Ga0059261_0928 at 960.525 kb on - strand, within Ga0059261_0928 at 960.525 kb on - strand, within Ga0059261_0928 at 960.525 kb on - strand, within Ga0059261_0928 at 960.525 kb on - strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.719 kb on + strand, within Ga0059261_0928 at 960.720 kb on - strand, within Ga0059261_0928 at 960.720 kb on - strand, within Ga0059261_0928 at 960.720 kb on - strand, within Ga0059261_0928 at 960.720 kb on - strand, within Ga0059261_0928 at 960.752 kb on + strand at 960.752 kb on + strand at 960.753 kb on - strand at 960.753 kb on - strand at 960.753 kb on - strand at 960.753 kb on - strand at 960.753 kb on - strand at 960.753 kb on - strand at 960.822 kb on - strand at 960.911 kb on + strand at 960.911 kb on + strand at 960.911 kb on + strand at 960.912 kb on - strand at 961.300 kb on + strand, within Ga0059261_0929 at 961.300 kb on + strand, within Ga0059261_0929 at 961.509 kb on + strand, within Ga0059261_0929 at 961.509 kb on + strand, within Ga0059261_0929 at 961.509 kb on + strand, within Ga0059261_0929 at 961.510 kb on - strand at 961.521 kb on + strand, within Ga0059261_0929 at 961.521 kb on + strand, within Ga0059261_0929 at 961.521 kb on + strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.522 kb on - strand, within Ga0059261_0929 at 961.918 kb on + strand at 961.918 kb on + strand at 961.918 kb on + strand at 961.919 kb on - strand at 962.153 kb on + strand, within Ga0059261_0930 at 962.153 kb on + strand, within Ga0059261_0930 at 962.153 kb on + strand, within Ga0059261_0930 at 962.154 kb on - strand, within Ga0059261_0930 at 962.222 kb on + strand, within Ga0059261_0930 at 962.223 kb on - strand, within Ga0059261_0930 at 962.223 kb on - strand, within Ga0059261_0930 at 962.223 kb on - strand, within Ga0059261_0930 at 962.223 kb on - strand at 962.522 kb on + strand, within Ga0059261_0930 at 962.522 kb on + strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.523 kb on - strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.554 kb on + strand, within Ga0059261_0930 at 962.555 kb on - strand, within Ga0059261_0930
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 959,986 + +0.9 959,986 + -0.8 960,039 - +0.1 960,039 - +0.5 960,063 + +0.3 960,063 + -0.3 960,063 + -0.2 960,063 + -0.4 960,063 + -0.9 960,063 + +3.2 960,063 + -0.1 960,063 + -0.4 960,064 - -0.7 960,064 - +0.1 960,064 - +0.7 960,064 - -0.0 960,064 - -0.7 960,123 - -1.7 960,123 - +0.5 960,351 + +0.6 960,351 + -0.6 960,351 + +0.5 960,352 - -0.1 960,524 + Ga0059261_0928 0.30 -0.4 960,524 + Ga0059261_0928 0.30 +0.5 960,525 - Ga0059261_0928 0.30 -2.0 960,525 - Ga0059261_0928 0.30 +0.6 960,525 - Ga0059261_0928 0.30 +0.3 960,525 - Ga0059261_0928 0.30 +0.2 960,525 - Ga0059261_0928 0.30 -0.6 960,719 + Ga0059261_0928 0.81 +0.5 960,719 + Ga0059261_0928 0.81 +1.9 960,719 + Ga0059261_0928 0.81 -0.5 960,719 + Ga0059261_0928 0.81 +0.6 960,719 + Ga0059261_0928 0.81 -1.2 960,719 + Ga0059261_0928 0.81 -0.9 960,719 + Ga0059261_0928 0.81 -0.8 960,720 - Ga0059261_0928 0.81 +0.1 960,720 - Ga0059261_0928 0.81 -1.2 960,720 - Ga0059261_0928 0.81 -0.2 960,720 - Ga0059261_0928 0.81 +0.9 960,752 + +0.1 960,752 + -1.9 960,753 - -0.1 960,753 - +0.5 960,753 - -0.3 960,753 - -1.7 960,753 - -1.3 960,753 - +0.9 960,822 - -0.5 960,911 + -0.5 960,911 + +0.3 960,911 + -0.1 960,912 - +0.6 961,300 + Ga0059261_0929 0.38 -0.1 961,300 + Ga0059261_0929 0.38 +0.0 961,509 + Ga0059261_0929 0.59 +0.9 961,509 + Ga0059261_0929 0.59 +1.6 961,509 + Ga0059261_0929 0.59 +0.1 961,510 - +1.9 961,521 + Ga0059261_0929 0.60 +0.5 961,521 + Ga0059261_0929 0.60 +0.7 961,521 + Ga0059261_0929 0.60 -0.0 961,522 - Ga0059261_0929 0.60 -0.4 961,522 - Ga0059261_0929 0.60 -0.4 961,522 - Ga0059261_0929 0.60 +0.1 961,522 - Ga0059261_0929 0.60 -0.1 961,918 + +1.2 961,918 + -0.0 961,918 + -0.1 961,919 - -0.4 962,153 + Ga0059261_0930 0.31 +1.1 962,153 + Ga0059261_0930 0.31 +0.3 962,153 + Ga0059261_0930 0.31 -1.1 962,154 - Ga0059261_0930 0.31 +0.4 962,222 + Ga0059261_0930 0.39 +0.1 962,223 - Ga0059261_0930 0.40 +0.2 962,223 - Ga0059261_0930 0.40 +0.8 962,223 - Ga0059261_0930 0.40 -0.4 962,223 - -1.1 962,522 + Ga0059261_0930 0.78 -1.2 962,522 + Ga0059261_0930 0.78 +0.3 962,523 - Ga0059261_0930 0.78 +2.3 962,523 - Ga0059261_0930 0.78 -0.5 962,523 - Ga0059261_0930 0.78 +0.1 962,523 - Ga0059261_0930 0.78 -0.1 962,523 - Ga0059261_0930 0.78 -0.1 962,554 + Ga0059261_0930 0.82 -0.7 962,554 + Ga0059261_0930 0.82 -0.3 962,554 + Ga0059261_0930 0.82 -0.0 962,554 + Ga0059261_0930 0.82 -0.7 962,554 + Ga0059261_0930 0.82 +0.0 962,554 + Ga0059261_0930 0.82 -0.7 962,554 + Ga0059261_0930 0.82 +0.5 962,555 - Ga0059261_0930 0.82 +0.3
Or see this region's nucleotide sequence