Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0807

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0806 and Ga0059261_0807 are separated by 58 nucleotidesGa0059261_0807 and Ga0059261_0808 are separated by 191 nucleotides Ga0059261_0806: Ga0059261_0806 - glutamate--cysteine ligase, plant type, at 847,728 to 849,110 _0806 Ga0059261_0807: Ga0059261_0807 - RNA methyltransferase, RsmE family, at 849,169 to 849,912 _0807 Ga0059261_0808: Ga0059261_0808 - Dolichyl-phosphate-mannose-protein mannosyltransferase, at 850,104 to 851,435 _0808 Position (kb) 849 850Strain fitness (log2 ratio) -2 -1 0 1at 849.113 kb on - strandat 849.113 kb on - strandat 849.167 kb on + strandat 849.168 kb on - strandat 849.170 kb on + strandat 849.170 kb on + strandat 849.170 kb on + strandat 849.171 kb on - strandat 849.171 kb on - strandat 849.504 kb on + strand, within Ga0059261_0807at 849.504 kb on + strand, within Ga0059261_0807at 849.504 kb on + strand, within Ga0059261_0807at 849.504 kb on + strand, within Ga0059261_0807at 849.505 kb on - strand, within Ga0059261_0807at 849.505 kb on - strand, within Ga0059261_0807at 849.505 kb on - strand, within Ga0059261_0807at 849.807 kb on - strand, within Ga0059261_0807at 849.945 kb on - strandat 849.945 kb on - strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.973 kb on + strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.974 kb on - strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.998 kb on + strandat 849.999 kb on - strandat 849.999 kb on - strandat 849.999 kb on - strandat 850.030 kb on + strandat 850.030 kb on + strandat 850.031 kb on - strandat 850.031 kb on - strandat 850.031 kb on - strandat 850.063 kb on + strandat 850.063 kb on + strandat 850.063 kb on + strandat 850.064 kb on - strandat 850.064 kb on - strandat 850.064 kb on - strandat 850.068 kb on + strandat 850.068 kb on + strandat 850.069 kb on - strandat 850.069 kb on - strandat 850.246 kb on + strand, within Ga0059261_0808at 850.247 kb on - strand, within Ga0059261_0808at 850.272 kb on + strand, within Ga0059261_0808at 850.272 kb on + strand, within Ga0059261_0808at 850.273 kb on - strand, within Ga0059261_0808at 850.273 kb on - strand, within Ga0059261_0808at 850.273 kb on - strand, within Ga0059261_0808at 850.312 kb on - strand, within Ga0059261_0808at 850.515 kb on + strand, within Ga0059261_0808at 850.515 kb on + strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.516 kb on - strand, within Ga0059261_0808at 850.524 kb on + strand, within Ga0059261_0808at 850.524 kb on + strand, within Ga0059261_0808at 850.535 kb on + strandat 850.535 kb on + strand, within Ga0059261_0808at 850.536 kb on - strand, within Ga0059261_0808at 850.536 kb on - strand, within Ga0059261_0808at 850.542 kb on + strand, within Ga0059261_0808at 850.542 kb on + strand, within Ga0059261_0808at 850.542 kb on + strand, within Ga0059261_0808at 850.543 kb on - strandat 850.543 kb on - strand, within Ga0059261_0808at 850.543 kb on - strand, within Ga0059261_0808at 850.740 kb on + strand, within Ga0059261_0808at 850.740 kb on + strand, within Ga0059261_0808at 850.740 kb on + strand, within Ga0059261_0808at 850.740 kb on + strandat 850.741 kb on - strand, within Ga0059261_0808at 850.741 kb on - strand, within Ga0059261_0808at 850.741 kb on - strand, within Ga0059261_0808at 850.779 kb on + strand, within Ga0059261_0808at 850.779 kb on + strand, within Ga0059261_0808at 850.779 kb on + strand, within Ga0059261_0808at 850.780 kb on - strand, within Ga0059261_0808at 850.780 kb on - strand, within Ga0059261_0808at 850.780 kb on - strand, within Ga0059261_0808at 850.911 kb on + strand, within Ga0059261_0808

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
remove
849,113 - -0.7
849,113 - -0.7
849,167 + +0.2
849,168 - +0.8
849,170 + +0.5
849,170 + +0.3
849,170 + -0.6
849,171 - -2.5
849,171 - -1.2
849,504 + Ga0059261_0807 0.45 -0.1
849,504 + Ga0059261_0807 0.45 +0.8
849,504 + Ga0059261_0807 0.45 +0.0
849,504 + Ga0059261_0807 0.45 +0.9
849,505 - Ga0059261_0807 0.45 +0.7
849,505 - Ga0059261_0807 0.45 +0.9
849,505 - Ga0059261_0807 0.45 -0.7
849,807 - Ga0059261_0807 0.86 -0.6
849,945 - -0.3
849,945 - +0.5
849,973 + -0.4
849,973 + -0.1
849,973 + -0.4
849,973 + -0.0
849,973 + +0.2
849,974 - +0.1
849,974 - -0.3
849,974 - -0.7
849,974 - +0.5
849,974 - +0.2
849,974 - +0.6
849,974 - +0.4
849,998 + +0.1
849,998 + -0.3
849,998 + -1.2
849,998 + -0.5
849,998 + -0.4
849,998 + -0.1
849,998 + -0.2
849,998 + -0.6
849,998 + -0.7
849,999 - +0.6
849,999 - -0.4
849,999 - -0.2
850,030 + -0.2
850,030 + -0.6
850,031 - +0.0
850,031 - -0.1
850,031 - +0.6
850,063 + +0.6
850,063 + -1.3
850,063 + -0.2
850,064 - +0.1
850,064 - -0.0
850,064 - -1.3
850,068 + -0.4
850,068 + +0.0
850,069 - -0.1
850,069 - +0.2
850,246 + Ga0059261_0808 0.11 +1.0
850,247 - Ga0059261_0808 0.11 +0.1
850,272 + Ga0059261_0808 0.13 +0.1
850,272 + Ga0059261_0808 0.13 -0.5
850,273 - Ga0059261_0808 0.13 +0.4
850,273 - Ga0059261_0808 0.13 -0.3
850,273 - Ga0059261_0808 0.13 -0.3
850,312 - Ga0059261_0808 0.16 -0.2
850,515 + Ga0059261_0808 0.31 -0.3
850,515 + Ga0059261_0808 0.31 +0.0
850,516 - Ga0059261_0808 0.31 -0.6
850,516 - Ga0059261_0808 0.31 -0.1
850,516 - Ga0059261_0808 0.31 -1.1
850,516 - Ga0059261_0808 0.31 +0.1
850,524 + Ga0059261_0808 0.32 -0.2
850,524 + Ga0059261_0808 0.32 -0.4
850,535 + +0.3
850,535 + Ga0059261_0808 0.32 +0.5
850,536 - Ga0059261_0808 0.32 +0.4
850,536 - Ga0059261_0808 0.32 +0.7
850,542 + Ga0059261_0808 0.33 -0.4
850,542 + Ga0059261_0808 0.33 -0.5
850,542 + Ga0059261_0808 0.33 -1.4
850,543 - -0.1
850,543 - Ga0059261_0808 0.33 -0.0
850,543 - Ga0059261_0808 0.33 -0.1
850,740 + Ga0059261_0808 0.48 +1.2
850,740 + Ga0059261_0808 0.48 -0.1
850,740 + Ga0059261_0808 0.48 +0.5
850,740 + +0.9
850,741 - Ga0059261_0808 0.48 +0.9
850,741 - Ga0059261_0808 0.48 +0.0
850,741 - Ga0059261_0808 0.48 -1.1
850,779 + Ga0059261_0808 0.51 +0.4
850,779 + Ga0059261_0808 0.51 -0.7
850,779 + Ga0059261_0808 0.51 +1.4
850,780 - Ga0059261_0808 0.51 +0.3
850,780 - Ga0059261_0808 0.51 +0.2
850,780 - Ga0059261_0808 0.51 +0.2
850,911 + Ga0059261_0808 0.61 -0.8

Or see this region's nucleotide sequence