Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0773

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0772 and Ga0059261_0773 overlap by 4 nucleotidesGa0059261_0773 and Ga0059261_0774 overlap by 4 nucleotides Ga0059261_0772: Ga0059261_0772 - Tannase and feruloyl esterase, at 801,760 to 803,352 _0772 Ga0059261_0773: Ga0059261_0773 - Esterase/lipase, at 803,349 to 804,239 _0773 Ga0059261_0774: Ga0059261_0774 - Carboxylesterase type B, at 804,236 to 805,696 _0774 Position (kb) 803 804 805Strain fitness (log2 ratio) -1 0 1at 802.388 kb on + strand, within Ga0059261_0772at 802.389 kb on - strand, within Ga0059261_0772at 802.424 kb on + strand, within Ga0059261_0772at 802.424 kb on + strand, within Ga0059261_0772at 802.424 kb on + strand, within Ga0059261_0772at 802.424 kb on + strand, within Ga0059261_0772at 802.425 kb on - strand, within Ga0059261_0772at 802.425 kb on - strand, within Ga0059261_0772at 802.425 kb on - strand, within Ga0059261_0772at 802.712 kb on + strand, within Ga0059261_0772at 802.712 kb on + strand, within Ga0059261_0772at 802.712 kb on + strand, within Ga0059261_0772at 802.713 kb on - strand, within Ga0059261_0772at 802.778 kb on + strand, within Ga0059261_0772at 802.778 kb on + strand, within Ga0059261_0772at 802.802 kb on + strand, within Ga0059261_0772at 802.803 kb on - strand, within Ga0059261_0772at 802.803 kb on - strand, within Ga0059261_0772at 802.805 kb on + strand, within Ga0059261_0772at 802.805 kb on + strand, within Ga0059261_0772at 802.805 kb on + strand, within Ga0059261_0772at 802.806 kb on - strand, within Ga0059261_0772at 802.806 kb on - strand, within Ga0059261_0772at 802.806 kb on - strand, within Ga0059261_0772at 802.806 kb on - strand, within Ga0059261_0772at 802.806 kb on - strand, within Ga0059261_0772at 802.806 kb on - strand, within Ga0059261_0772at 802.843 kb on - strand, within Ga0059261_0772at 802.862 kb on + strand, within Ga0059261_0772at 802.862 kb on + strand, within Ga0059261_0772at 802.862 kb on + strand, within Ga0059261_0772at 802.862 kb on + strand, within Ga0059261_0772at 802.863 kb on - strandat 802.863 kb on - strand, within Ga0059261_0772at 802.952 kb on + strand, within Ga0059261_0772at 802.952 kb on + strand, within Ga0059261_0772at 802.952 kb on + strand, within Ga0059261_0772at 802.952 kb on + strand, within Ga0059261_0772at 802.952 kb on + strand, within Ga0059261_0772at 802.953 kb on - strand, within Ga0059261_0772at 802.953 kb on - strand, within Ga0059261_0772at 803.251 kb on - strandat 803.728 kb on + strand, within Ga0059261_0773at 803.728 kb on + strand, within Ga0059261_0773at 803.836 kb on + strand, within Ga0059261_0773at 803.837 kb on - strand, within Ga0059261_0773at 803.837 kb on - strand, within Ga0059261_0773at 803.837 kb on - strand, within Ga0059261_0773at 803.885 kb on - strand, within Ga0059261_0773at 804.222 kb on + strandat 804.222 kb on + strandat 804.222 kb on + strandat 804.222 kb on + strandat 804.222 kb on + strandat 804.223 kb on - strandat 804.311 kb on - strandat 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.409 kb on - strand, within Ga0059261_0774at 804.409 kb on - strand, within Ga0059261_0774at 804.409 kb on - strand, within Ga0059261_0774at 804.409 kb on - strandat 804.537 kb on + strand, within Ga0059261_0774at 804.537 kb on + strand, within Ga0059261_0774at 804.537 kb on + strand, within Ga0059261_0774at 804.538 kb on - strand, within Ga0059261_0774at 804.549 kb on + strand, within Ga0059261_0774at 804.549 kb on + strand, within Ga0059261_0774at 804.550 kb on - strand, within Ga0059261_0774at 804.633 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strandat 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.764 kb on - strand, within Ga0059261_0774at 804.764 kb on - strand, within Ga0059261_0774at 804.764 kb on - strand, within Ga0059261_0774at 804.834 kb on + strand, within Ga0059261_0774at 804.861 kb on + strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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802,388 + Ga0059261_0772 0.39 +1.4
802,389 - Ga0059261_0772 0.39 -0.9
802,424 + Ga0059261_0772 0.42 +0.3
802,424 + Ga0059261_0772 0.42 +0.6
802,424 + Ga0059261_0772 0.42 +0.1
802,424 + Ga0059261_0772 0.42 -0.4
802,425 - Ga0059261_0772 0.42 -0.2
802,425 - Ga0059261_0772 0.42 +0.8
802,425 - Ga0059261_0772 0.42 -0.7
802,712 + Ga0059261_0772 0.60 -0.5
802,712 + Ga0059261_0772 0.60 -0.5
802,712 + Ga0059261_0772 0.60 -0.1
802,713 - Ga0059261_0772 0.60 -0.5
802,778 + Ga0059261_0772 0.64 -0.2
802,778 + Ga0059261_0772 0.64 -0.6
802,802 + Ga0059261_0772 0.65 +0.8
802,803 - Ga0059261_0772 0.65 +0.4
802,803 - Ga0059261_0772 0.65 -0.4
802,805 + Ga0059261_0772 0.66 -0.2
802,805 + Ga0059261_0772 0.66 +0.3
802,805 + Ga0059261_0772 0.66 -0.8
802,806 - Ga0059261_0772 0.66 +0.1
802,806 - Ga0059261_0772 0.66 +0.0
802,806 - Ga0059261_0772 0.66 +0.3
802,806 - Ga0059261_0772 0.66 -0.4
802,806 - Ga0059261_0772 0.66 +0.4
802,806 - Ga0059261_0772 0.66 -0.3
802,843 - Ga0059261_0772 0.68 +0.5
802,862 + Ga0059261_0772 0.69 +0.2
802,862 + Ga0059261_0772 0.69 -0.6
802,862 + Ga0059261_0772 0.69 -0.7
802,862 + Ga0059261_0772 0.69 +0.3
802,863 - -1.1
802,863 - Ga0059261_0772 0.69 -0.6
802,952 + Ga0059261_0772 0.75 -0.9
802,952 + Ga0059261_0772 0.75 +1.0
802,952 + Ga0059261_0772 0.75 +0.1
802,952 + Ga0059261_0772 0.75 -0.8
802,952 + Ga0059261_0772 0.75 +0.0
802,953 - Ga0059261_0772 0.75 +1.2
802,953 - Ga0059261_0772 0.75 -0.5
803,251 - -0.2
803,728 + Ga0059261_0773 0.43 -0.6
803,728 + Ga0059261_0773 0.43 +1.6
803,836 + Ga0059261_0773 0.55 +0.5
803,837 - Ga0059261_0773 0.55 -0.9
803,837 - Ga0059261_0773 0.55 -1.2
803,837 - Ga0059261_0773 0.55 +0.6
803,885 - Ga0059261_0773 0.60 +0.4
804,222 + -0.2
804,222 + -0.4
804,222 + +0.1
804,222 + -0.3
804,222 + -0.4
804,223 - -0.3
804,311 - +0.9
804,408 + Ga0059261_0774 0.12 +0.5
804,408 + Ga0059261_0774 0.12 -0.5
804,408 + Ga0059261_0774 0.12 -0.0
804,408 + Ga0059261_0774 0.12 +1.2
804,408 + Ga0059261_0774 0.12 +0.9
804,408 + Ga0059261_0774 0.12 -0.2
804,409 - Ga0059261_0774 0.12 +0.2
804,409 - Ga0059261_0774 0.12 +0.1
804,409 - Ga0059261_0774 0.12 -0.8
804,409 - +0.9
804,537 + Ga0059261_0774 0.21 +0.3
804,537 + Ga0059261_0774 0.21 +0.4
804,537 + Ga0059261_0774 0.21 -0.0
804,538 - Ga0059261_0774 0.21 -0.9
804,549 + Ga0059261_0774 0.21 -1.1
804,549 + Ga0059261_0774 0.21 +0.6
804,550 - Ga0059261_0774 0.21 +0.1
804,633 + Ga0059261_0774 0.27 -0.1
804,660 + Ga0059261_0774 0.29 -0.1
804,660 + Ga0059261_0774 0.29 +1.4
804,660 + Ga0059261_0774 0.29 -0.1
804,660 + Ga0059261_0774 0.29 +0.4
804,660 + Ga0059261_0774 0.29 +0.4
804,661 - Ga0059261_0774 0.29 +0.0
804,661 - Ga0059261_0774 0.29 -0.2
804,661 - Ga0059261_0774 0.29 +0.1
804,661 - Ga0059261_0774 0.29 +0.7
804,661 - +0.4
804,661 - Ga0059261_0774 0.29 +0.5
804,661 - Ga0059261_0774 0.29 +0.3
804,763 + Ga0059261_0774 0.36 -0.7
804,763 + Ga0059261_0774 0.36 +0.8
804,763 + Ga0059261_0774 0.36 +1.4
804,763 + Ga0059261_0774 0.36 -0.1
804,763 + Ga0059261_0774 0.36 -0.1
804,764 - Ga0059261_0774 0.36 -0.2
804,764 - Ga0059261_0774 0.36 -0.4
804,764 - Ga0059261_0774 0.36 -0.5
804,834 + Ga0059261_0774 0.41 -0.4
804,861 + Ga0059261_0774 0.43 -0.0
804,862 - Ga0059261_0774 0.43 -1.6
804,862 - Ga0059261_0774 0.43 -1.1
804,862 - Ga0059261_0774 0.43 +0.3
804,862 - Ga0059261_0774 0.43 -1.6
804,862 - Ga0059261_0774 0.43 -0.2

Or see this region's nucleotide sequence