Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0464

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0462 and Ga0059261_0463 are separated by 232 nucleotidesGa0059261_0463 and Ga0059261_0464 are separated by 97 nucleotidesGa0059261_0464 and Ga0059261_0465 are separated by 132 nucleotides Ga0059261_0462: Ga0059261_0462 - Domain of unknown function (DUF305), at 449,121 to 449,564 _0462 Ga0059261_0463: Ga0059261_0463 - hypothetical protein, at 449,797 to 450,135 _0463 Ga0059261_0464: Ga0059261_0464 - hypothetical protein, at 450,233 to 450,517 _0464 Ga0059261_0465: Ga0059261_0465 - Outer membrane protein, at 450,650 to 451,879 _0465 Position (kb) 450 451Strain fitness (log2 ratio) -2 -1 0 1at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.241 kb on + strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strandat 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.242 kb on - strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.243 kb on + strand, within Ga0059261_0462at 449.244 kb on - strand, within Ga0059261_0462at 449.244 kb on - strand, within Ga0059261_0462at 449.244 kb on - strand, within Ga0059261_0462at 449.244 kb on - strandat 449.244 kb on - strand, within Ga0059261_0462at 449.425 kb on + strand, within Ga0059261_0462at 449.425 kb on + strand, within Ga0059261_0462at 449.425 kb on + strand, within Ga0059261_0462at 449.426 kb on - strand, within Ga0059261_0462at 449.426 kb on - strand, within Ga0059261_0462at 449.426 kb on - strand, within Ga0059261_0462at 449.618 kb on + strandat 449.618 kb on + strandat 449.618 kb on + strandat 449.619 kb on - strandat 449.793 kb on + strandat 449.845 kb on + strand, within Ga0059261_0463at 449.845 kb on + strand, within Ga0059261_0463at 449.845 kb on + strand, within Ga0059261_0463at 449.845 kb on + strand, within Ga0059261_0463at 449.846 kb on - strand, within Ga0059261_0463at 449.846 kb on - strand, within Ga0059261_0463at 449.846 kb on - strand, within Ga0059261_0463at 449.991 kb on + strand, within Ga0059261_0463at 449.992 kb on - strand, within Ga0059261_0463at 449.992 kb on - strand, within Ga0059261_0463at 449.992 kb on - strand, within Ga0059261_0463at 449.992 kb on - strand, within Ga0059261_0463at 450.070 kb on - strand, within Ga0059261_0463at 450.149 kb on + strandat 450.149 kb on + strandat 450.149 kb on + strandat 450.150 kb on - strandat 450.150 kb on - strandat 450.332 kb on + strand, within Ga0059261_0464at 450.333 kb on - strand, within Ga0059261_0464at 450.333 kb on - strand, within Ga0059261_0464at 450.515 kb on + strandat 450.515 kb on + strandat 450.515 kb on + strandat 450.515 kb on + strandat 450.515 kb on + strandat 450.516 kb on - strandat 450.516 kb on - strandat 450.516 kb on - strandat 450.535 kb on + strandat 450.539 kb on + strandat 450.539 kb on + strandat 450.539 kb on + strandat 450.539 kb on + strandat 450.539 kb on + strandat 450.539 kb on + strandat 450.540 kb on - strandat 450.540 kb on - strandat 450.540 kb on - strandat 450.691 kb on + strandat 450.719 kb on + strandat 450.719 kb on + strandat 450.719 kb on + strandat 450.719 kb on + strandat 450.719 kb on + strandat 450.720 kb on - strandat 450.720 kb on - strandat 450.720 kb on - strandat 450.720 kb on - strandat 450.720 kb on - strandat 450.857 kb on + strand, within Ga0059261_0465at 450.857 kb on + strand, within Ga0059261_0465at 450.858 kb on - strand, within Ga0059261_0465at 450.858 kb on - strand, within Ga0059261_0465at 450.858 kb on - strand, within Ga0059261_0465at 450.858 kb on - strand, within Ga0059261_0465at 450.858 kb on - strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.883 kb on + strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.884 kb on - strand, within Ga0059261_0465at 450.887 kb on + strand, within Ga0059261_0465at 450.887 kb on + strand, within Ga0059261_0465at 450.888 kb on - strand, within Ga0059261_0465at 450.888 kb on - strandat 450.888 kb on - strand, within Ga0059261_0465at 450.888 kb on - strand, within Ga0059261_0465at 450.888 kb on - strand, within Ga0059261_0465at 450.926 kb on - strand, within Ga0059261_0465at 450.987 kb on + strand, within Ga0059261_0465at 450.987 kb on + strand, within Ga0059261_0465at 450.988 kb on - strand, within Ga0059261_0465at 450.988 kb on - strand, within Ga0059261_0465at 450.988 kb on - strand, within Ga0059261_0465at 450.988 kb on - strand, within Ga0059261_0465at 451.479 kb on - strand, within Ga0059261_0465at 451.498 kb on - strand, within Ga0059261_0465

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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449,241 + Ga0059261_0462 0.27 +0.1
449,241 + Ga0059261_0462 0.27 +0.4
449,241 + Ga0059261_0462 0.27 -1.3
449,241 + Ga0059261_0462 0.27 -0.3
449,241 + Ga0059261_0462 0.27 +0.1
449,241 + Ga0059261_0462 0.27 +0.4
449,241 + Ga0059261_0462 0.27 +0.3
449,241 + Ga0059261_0462 0.27 +0.0
449,241 + Ga0059261_0462 0.27 +0.4
449,242 - Ga0059261_0462 0.27 +0.5
449,242 - Ga0059261_0462 0.27 -0.6
449,242 - Ga0059261_0462 0.27 -0.5
449,242 - Ga0059261_0462 0.27 -0.2
449,242 - Ga0059261_0462 0.27 -0.3
449,242 - Ga0059261_0462 0.27 +0.1
449,242 - -0.0
449,242 - Ga0059261_0462 0.27 -0.3
449,242 - Ga0059261_0462 0.27 +0.6
449,242 - Ga0059261_0462 0.27 -0.3
449,243 + Ga0059261_0462 0.27 -0.0
449,243 + Ga0059261_0462 0.27 -0.3
449,243 + Ga0059261_0462 0.27 -1.2
449,243 + Ga0059261_0462 0.27 -0.0
449,243 + Ga0059261_0462 0.27 -0.4
449,243 + Ga0059261_0462 0.27 -1.0
449,243 + Ga0059261_0462 0.27 -0.1
449,243 + Ga0059261_0462 0.27 +0.1
449,244 - Ga0059261_0462 0.28 -0.8
449,244 - Ga0059261_0462 0.28 +0.4
449,244 - Ga0059261_0462 0.28 -0.1
449,244 - +1.0
449,244 - Ga0059261_0462 0.28 -0.7
449,425 + Ga0059261_0462 0.68 +0.7
449,425 + Ga0059261_0462 0.68 -0.4
449,425 + Ga0059261_0462 0.68 -0.2
449,426 - Ga0059261_0462 0.69 -0.4
449,426 - Ga0059261_0462 0.69 -0.4
449,426 - Ga0059261_0462 0.69 +0.4
449,618 + +0.6
449,618 + +0.1
449,618 + -0.2
449,619 - -0.1
449,793 + +1.6
449,845 + Ga0059261_0463 0.14 -0.1
449,845 + Ga0059261_0463 0.14 +1.0
449,845 + Ga0059261_0463 0.14 -1.0
449,845 + Ga0059261_0463 0.14 +0.8
449,846 - Ga0059261_0463 0.14 +0.2
449,846 - Ga0059261_0463 0.14 -0.1
449,846 - Ga0059261_0463 0.14 -0.1
449,991 + Ga0059261_0463 0.57 +0.3
449,992 - Ga0059261_0463 0.58 -0.1
449,992 - Ga0059261_0463 0.58 +0.1
449,992 - Ga0059261_0463 0.58 -0.2
449,992 - Ga0059261_0463 0.58 +0.6
450,070 - Ga0059261_0463 0.81 -1.4
450,149 + -0.1
450,149 + -1.6
450,149 + +0.2
450,150 - +0.4
450,150 - +0.1
450,332 + Ga0059261_0464 0.35 +0.9
450,333 - Ga0059261_0464 0.35 -0.3
450,333 - Ga0059261_0464 0.35 -0.7
450,515 + -0.8
450,515 + +1.2
450,515 + +0.1
450,515 + -0.1
450,515 + -0.8
450,516 - +0.6
450,516 - -1.2
450,516 - +1.0
450,535 + +0.0
450,539 + +0.4
450,539 + -0.4
450,539 + +1.0
450,539 + -0.2
450,539 + -0.2
450,539 + +0.4
450,540 - -1.5
450,540 - +0.5
450,540 - +0.4
450,691 + -2.6
450,719 + +0.2
450,719 + +0.0
450,719 + -0.6
450,719 + -1.5
450,719 + -0.3
450,720 - +0.6
450,720 - -0.2
450,720 - -0.5
450,720 - +0.1
450,720 - -0.1
450,857 + Ga0059261_0465 0.17 -0.6
450,857 + Ga0059261_0465 0.17 +0.8
450,858 - Ga0059261_0465 0.17 -0.5
450,858 - Ga0059261_0465 0.17 -0.5
450,858 - Ga0059261_0465 0.17 -0.2
450,858 - Ga0059261_0465 0.17 +0.3
450,858 - Ga0059261_0465 0.17 -0.0
450,883 + Ga0059261_0465 0.19 -1.5
450,883 + Ga0059261_0465 0.19 +0.1
450,883 + Ga0059261_0465 0.19 -0.2
450,883 + Ga0059261_0465 0.19 -1.2
450,883 + Ga0059261_0465 0.19 +0.3
450,883 + Ga0059261_0465 0.19 -0.6
450,883 + Ga0059261_0465 0.19 +0.2
450,883 + Ga0059261_0465 0.19 -0.0
450,884 - Ga0059261_0465 0.19 +0.7
450,884 - Ga0059261_0465 0.19 -0.6
450,884 - Ga0059261_0465 0.19 +0.2
450,884 - Ga0059261_0465 0.19 +0.2
450,884 - Ga0059261_0465 0.19 -0.7
450,884 - Ga0059261_0465 0.19 -0.6
450,884 - Ga0059261_0465 0.19 +0.1
450,884 - Ga0059261_0465 0.19 -0.2
450,884 - Ga0059261_0465 0.19 +0.5
450,884 - Ga0059261_0465 0.19 +0.1
450,884 - Ga0059261_0465 0.19 -0.2
450,884 - Ga0059261_0465 0.19 +0.7
450,884 - Ga0059261_0465 0.19 -0.3
450,884 - Ga0059261_0465 0.19 -0.9
450,884 - Ga0059261_0465 0.19 -0.0
450,884 - Ga0059261_0465 0.19 +0.3
450,887 + Ga0059261_0465 0.19 +0.3
450,887 + Ga0059261_0465 0.19 -0.1
450,888 - Ga0059261_0465 0.19 -0.5
450,888 - -1.0
450,888 - Ga0059261_0465 0.19 -0.6
450,888 - Ga0059261_0465 0.19 +0.0
450,888 - Ga0059261_0465 0.19 +0.6
450,926 - Ga0059261_0465 0.22 -0.3
450,987 + Ga0059261_0465 0.27 +0.7
450,987 + Ga0059261_0465 0.27 -1.2
450,988 - Ga0059261_0465 0.27 -0.6
450,988 - Ga0059261_0465 0.27 -0.2
450,988 - Ga0059261_0465 0.27 -0.0
450,988 - Ga0059261_0465 0.27 -0.0
451,479 - Ga0059261_0465 0.67 +1.0
451,498 - Ga0059261_0465 0.69 +0.3

Or see this region's nucleotide sequence