Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0220

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0219 and Ga0059261_0220 are separated by 27 nucleotidesGa0059261_0220 and Ga0059261_0221 are separated by 52 nucleotides Ga0059261_0219: Ga0059261_0219 - Lactate dehydrogenase and related dehydrogenases, at 207,360 to 208,370 _0219 Ga0059261_0220: Ga0059261_0220 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 208,398 to 209,789 _0220 Ga0059261_0221: Ga0059261_0221 - aspartyl-tRNA synthetase, bacterial type, at 209,842 to 211,638 _0221 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.590 kb on - strand, within Ga0059261_0219at 207.674 kb on + strand, within Ga0059261_0219at 207.674 kb on + strandat 207.674 kb on + strand, within Ga0059261_0219at 207.675 kb on - strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.980 kb on + strand, within Ga0059261_0219at 207.980 kb on + strand, within Ga0059261_0219at 207.980 kb on + strand, within Ga0059261_0219at 207.981 kb on - strand, within Ga0059261_0219at 207.981 kb on - strand, within Ga0059261_0219at 207.981 kb on - strand, within Ga0059261_0219at 208.041 kb on + strand, within Ga0059261_0219at 208.041 kb on + strand, within Ga0059261_0219at 208.041 kb on + strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.339 kb on + strandat 208.339 kb on + strandat 208.340 kb on - strandat 208.340 kb on - strandat 208.383 kb on + strandat 208.447 kb on + strandat 208.447 kb on + strandat 208.448 kb on - strandat 208.448 kb on - strandat 208.448 kb on - strandat 208.460 kb on + strandat 208.460 kb on + strandat 208.461 kb on - strandat 208.540 kb on + strand, within Ga0059261_0220at 208.540 kb on + strand, within Ga0059261_0220at 208.540 kb on + strand, within Ga0059261_0220at 208.541 kb on - strand, within Ga0059261_0220at 208.541 kb on - strand, within Ga0059261_0220at 208.541 kb on - strand, within Ga0059261_0220at 208.637 kb on + strand, within Ga0059261_0220at 208.638 kb on - strand, within Ga0059261_0220at 208.638 kb on - strand, within Ga0059261_0220at 208.786 kb on + strand, within Ga0059261_0220at 208.787 kb on - strand, within Ga0059261_0220at 208.787 kb on - strand, within Ga0059261_0220at 208.787 kb on - strand, within Ga0059261_0220at 208.864 kb on + strand, within Ga0059261_0220at 208.864 kb on + strand, within Ga0059261_0220at 208.864 kb on + strand, within Ga0059261_0220at 208.865 kb on - strand, within Ga0059261_0220at 208.865 kb on - strand, within Ga0059261_0220at 208.865 kb on - strand, within Ga0059261_0220at 208.867 kb on + strand, within Ga0059261_0220at 208.867 kb on + strand, within Ga0059261_0220at 208.868 kb on - strand, within Ga0059261_0220at 209.338 kb on + strand, within Ga0059261_0220at 209.338 kb on + strand, within Ga0059261_0220at 209.338 kb on + strand, within Ga0059261_0220at 209.829 kb on + strandat 209.829 kb on + strandat 209.829 kb on + strandat 209.830 kb on - strandat 209.830 kb on - strandat 209.843 kb on + strandat 209.843 kb on + strandat 209.843 kb on + strandat 209.844 kb on - strandat 209.844 kb on - strandat 209.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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207,589 + Ga0059261_0219 0.23 -0.2
207,589 + Ga0059261_0219 0.23 +0.8
207,589 + Ga0059261_0219 0.23 +0.5
207,589 + Ga0059261_0219 0.23 +0.1
207,589 + Ga0059261_0219 0.23 -2.1
207,589 + Ga0059261_0219 0.23 -0.1
207,589 + Ga0059261_0219 0.23 -0.0
207,589 + Ga0059261_0219 0.23 -0.2
207,589 + Ga0059261_0219 0.23 -0.1
207,590 - Ga0059261_0219 0.23 -0.5
207,674 + Ga0059261_0219 0.31 -1.2
207,674 + +0.3
207,674 + Ga0059261_0219 0.31 -0.3
207,675 - Ga0059261_0219 0.31 +1.1
207,805 + Ga0059261_0219 0.44 +0.1
207,805 + Ga0059261_0219 0.44 -1.9
207,805 + Ga0059261_0219 0.44 +0.6
207,805 + Ga0059261_0219 0.44 -0.4
207,805 + Ga0059261_0219 0.44 +0.0
207,805 + Ga0059261_0219 0.44 +1.6
207,805 + Ga0059261_0219 0.44 -1.0
207,806 - Ga0059261_0219 0.44 +0.7
207,806 - Ga0059261_0219 0.44 +0.6
207,806 - Ga0059261_0219 0.44 -0.4
207,806 - Ga0059261_0219 0.44 -1.0
207,980 + Ga0059261_0219 0.61 -0.8
207,980 + Ga0059261_0219 0.61 -1.0
207,980 + Ga0059261_0219 0.61 -0.0
207,981 - Ga0059261_0219 0.61 +2.0
207,981 - Ga0059261_0219 0.61 -0.5
207,981 - Ga0059261_0219 0.61 -0.5
208,041 + Ga0059261_0219 0.67 +1.9
208,041 + Ga0059261_0219 0.67 +0.5
208,041 + Ga0059261_0219 0.67 -0.0
208,042 - Ga0059261_0219 0.67 -0.1
208,042 - Ga0059261_0219 0.67 +1.0
208,042 - Ga0059261_0219 0.67 +0.0
208,042 - Ga0059261_0219 0.67 +0.1
208,042 - Ga0059261_0219 0.67 +0.4
208,042 - Ga0059261_0219 0.67 -0.3
208,072 + Ga0059261_0219 0.70 +0.3
208,072 + Ga0059261_0219 0.70 -0.8
208,072 + Ga0059261_0219 0.70 +0.1
208,072 + Ga0059261_0219 0.70 -0.5
208,339 + -0.8
208,339 + +0.4
208,340 - -0.7
208,340 - -0.1
208,383 + -0.7
208,447 + -0.2
208,447 + +0.4
208,448 - -0.5
208,448 - -0.1
208,448 - +1.0
208,460 + -0.2
208,460 + +0.4
208,461 - +0.5
208,540 + Ga0059261_0220 0.10 +1.3
208,540 + Ga0059261_0220 0.10 +0.2
208,540 + Ga0059261_0220 0.10 -0.0
208,541 - Ga0059261_0220 0.10 -0.2
208,541 - Ga0059261_0220 0.10 +0.7
208,541 - Ga0059261_0220 0.10 +0.7
208,637 + Ga0059261_0220 0.17 -0.2
208,638 - Ga0059261_0220 0.17 -0.0
208,638 - Ga0059261_0220 0.17 -0.7
208,786 + Ga0059261_0220 0.28 -0.2
208,787 - Ga0059261_0220 0.28 -0.2
208,787 - Ga0059261_0220 0.28 +0.5
208,787 - Ga0059261_0220 0.28 -0.5
208,864 + Ga0059261_0220 0.33 +0.1
208,864 + Ga0059261_0220 0.33 -0.1
208,864 + Ga0059261_0220 0.33 -0.1
208,865 - Ga0059261_0220 0.34 +0.5
208,865 - Ga0059261_0220 0.34 +1.0
208,865 - Ga0059261_0220 0.34 -0.4
208,867 + Ga0059261_0220 0.34 -0.9
208,867 + Ga0059261_0220 0.34 -0.5
208,868 - Ga0059261_0220 0.34 -0.2
209,338 + Ga0059261_0220 0.68 +0.9
209,338 + Ga0059261_0220 0.68 +0.6
209,338 + Ga0059261_0220 0.68 +0.3
209,829 + +0.2
209,829 + -0.5
209,829 + +0.5
209,830 - +0.8
209,830 - +0.6
209,843 + -0.2
209,843 + -0.2
209,843 + -0.1
209,844 - -0.3
209,844 - +0.4
209,844 - -1.1

Or see this region's nucleotide sequence