Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0136 and Ga0059261_0137 are separated by 559 nucleotides Ga0059261_0137 and Ga0059261_0138 overlap by 4 nucleotides Ga0059261_0138 and Ga0059261_0139 are separated by 2 nucleotides
Ga0059261_0136: Ga0059261_0136 - Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 128,324 to 130,588
_0136
Ga0059261_0137: Ga0059261_0137 - nitrogen regulation protein NR(I), at 131,148 to 132,593
_0137
Ga0059261_0138: Ga0059261_0138 - hypothetical protein, at 132,590 to 132,841
_0138
Ga0059261_0139: Ga0059261_0139 - Signal transduction histidine kinase, nitrogen specific, at 132,844 to 133,956
_0139
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.216 kb on - strand, within Ga0059261_0136 at 130.216 kb on - strand, within Ga0059261_0136 at 130.471 kb on - strand at 130.471 kb on - strand at 130.559 kb on - strand at 130.559 kb on - strand at 130.600 kb on + strand at 130.600 kb on + strand at 130.601 kb on - strand at 130.601 kb on - strand at 130.608 kb on - strand at 130.608 kb on - strand at 130.608 kb on - strand at 130.651 kb on - strand at 130.691 kb on + strand at 130.696 kb on + strand at 130.697 kb on - strand at 130.721 kb on + strand at 130.721 kb on + strand at 130.722 kb on - strand at 130.749 kb on - strand at 130.769 kb on + strand at 130.770 kb on - strand at 130.770 kb on - strand at 130.800 kb on + strand at 130.800 kb on + strand at 130.801 kb on - strand at 130.804 kb on + strand at 130.872 kb on + strand at 130.898 kb on - strand at 130.932 kb on + strand at 130.982 kb on + strand at 130.982 kb on + strand at 130.982 kb on + strand at 130.983 kb on - strand at 130.983 kb on - strand at 131.026 kb on + strand at 131.027 kb on - strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.035 kb on - strand at 131.035 kb on - strand at 131.035 kb on - strand at 131.071 kb on - strand at 131.081 kb on + strand at 131.082 kb on - strand at 131.082 kb on - strand at 131.135 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.138 kb on - strand at 131.138 kb on - strand at 131.138 kb on - strand at 131.138 kb on - strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.196 kb on - strand at 131.323 kb on + strand, within Ga0059261_0137 at 131.323 kb on + strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.698 kb on + strand, within Ga0059261_0137 at 131.698 kb on + strand, within Ga0059261_0137 at 132.142 kb on + strand, within Ga0059261_0137 at 132.143 kb on - strand, within Ga0059261_0137 at 132.143 kb on - strand, within Ga0059261_0137 at 132.192 kb on + strand, within Ga0059261_0137 at 132.289 kb on + strand, within Ga0059261_0137 at 132.289 kb on + strand, within Ga0059261_0137 at 132.290 kb on - strand, within Ga0059261_0137 at 132.290 kb on - strand at 132.374 kb on - strand, within Ga0059261_0137 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.633 kb on + strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.634 kb on - strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand, within Ga0059261_0138 at 132.693 kb on + strand at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand at 132.694 kb on - strand, within Ga0059261_0138 at 132.694 kb on - strand, within Ga0059261_0138 at 132.742 kb on - strand, within Ga0059261_0138 at 132.786 kb on + strand, within Ga0059261_0138 at 132.786 kb on + strand, within Ga0059261_0138 at 132.786 kb on + strand, within Ga0059261_0138 at 132.787 kb on - strand, within Ga0059261_0138 at 132.787 kb on - strand, within Ga0059261_0138 at 132.827 kb on - strand at 132.841 kb on + strand at 132.841 kb on + strand at 132.841 kb on + strand at 132.841 kb on + strand at 132.842 kb on - strand at 132.908 kb on + strand at 132.908 kb on + strand at 132.934 kb on + strand at 132.934 kb on + strand at 132.935 kb on - strand at 132.935 kb on - strand at 132.935 kb on - strand at 133.118 kb on + strand at 133.119 kb on - strand, within Ga0059261_0139 at 133.119 kb on - strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.319 kb on + strand, within Ga0059261_0139 at 133.320 kb on - strand, within Ga0059261_0139 at 133.320 kb on - strand, within Ga0059261_0139 at 133.320 kb on - strand, within Ga0059261_0139 at 133.320 kb on - strand, within Ga0059261_0139 at 133.541 kb on - strand, within Ga0059261_0139
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 130,216 - Ga0059261_0136 0.84 +1.9 130,216 - Ga0059261_0136 0.84 -0.7 130,471 - -1.5 130,471 - +0.2 130,559 - -2.1 130,559 - -1.4 130,600 + -0.6 130,600 + -0.7 130,601 - +0.9 130,601 - +0.3 130,608 - +0.1 130,608 - +0.2 130,608 - +1.9 130,651 - +0.7 130,691 + -0.1 130,696 + +1.9 130,697 - +1.0 130,721 + -0.2 130,721 + -0.3 130,722 - -0.4 130,749 - -0.5 130,769 + +0.0 130,770 - +0.7 130,770 - +0.7 130,800 + -0.1 130,800 + +0.2 130,801 - -0.4 130,804 + -0.5 130,872 + +0.0 130,898 - +1.5 130,932 + +1.0 130,982 + +0.3 130,982 + -0.7 130,982 + -0.0 130,983 - +0.1 130,983 - -0.2 131,026 + -0.6 131,027 - +0.2 131,034 + +0.2 131,034 + -0.7 131,034 + +0.6 131,034 + -0.2 131,034 + +0.1 131,035 - -0.1 131,035 - +0.3 131,035 - +0.3 131,071 - -0.1 131,081 + +0.2 131,082 - +0.5 131,082 - +1.0 131,135 + +0.7 131,137 + +0.3 131,137 + -0.8 131,137 + +2.1 131,137 + +0.0 131,137 + +0.2 131,138 - +0.0 131,138 - -0.7 131,138 - -1.3 131,138 - -0.1 131,149 + +0.2 131,149 + -0.4 131,149 + +0.0 131,149 + +0.1 131,149 + +1.0 131,149 + -1.2 131,149 + -0.0 131,149 + +0.3 131,149 + -0.4 131,150 - +0.0 131,150 - -0.1 131,150 - +0.5 131,150 - +2.1 131,150 - +0.0 131,150 - +0.2 131,150 - +0.5 131,196 - -0.9 131,323 + Ga0059261_0137 0.12 +0.2 131,323 + Ga0059261_0137 0.12 +0.2 131,324 - Ga0059261_0137 0.12 +0.6 131,324 - Ga0059261_0137 0.12 +0.1 131,324 - Ga0059261_0137 0.12 +0.5 131,324 - Ga0059261_0137 0.12 -1.3 131,698 + Ga0059261_0137 0.38 -0.0 131,698 + Ga0059261_0137 0.38 +0.9 132,142 + Ga0059261_0137 0.69 -0.6 132,143 - Ga0059261_0137 0.69 +0.4 132,143 - Ga0059261_0137 0.69 +1.2 132,192 + Ga0059261_0137 0.72 +1.0 132,289 + Ga0059261_0137 0.79 -0.6 132,289 + Ga0059261_0137 0.79 -0.4 132,290 - Ga0059261_0137 0.79 +0.2 132,290 - -0.1 132,374 - Ga0059261_0137 0.85 -0.5 132,633 + Ga0059261_0138 0.17 +0.0 132,633 + Ga0059261_0138 0.17 +0.3 132,633 + Ga0059261_0138 0.17 -1.0 132,633 + Ga0059261_0138 0.17 +0.2 132,633 + Ga0059261_0138 0.17 -0.3 132,633 + Ga0059261_0138 0.17 +0.4 132,633 + Ga0059261_0138 0.17 -0.1 132,633 + Ga0059261_0138 0.17 -0.1 132,633 + Ga0059261_0138 0.17 -0.2 132,633 + Ga0059261_0138 0.17 -0.2 132,633 + Ga0059261_0138 0.17 +0.5 132,633 + -0.1 132,633 + Ga0059261_0138 0.17 -0.1 132,633 + Ga0059261_0138 0.17 +1.1 132,633 + Ga0059261_0138 0.17 -0.8 132,633 + Ga0059261_0138 0.17 +0.5 132,634 - Ga0059261_0138 0.17 -0.2 132,634 - Ga0059261_0138 0.17 -0.4 132,634 - Ga0059261_0138 0.17 +0.2 132,634 - Ga0059261_0138 0.17 -1.0 132,634 - Ga0059261_0138 0.17 -0.9 132,634 - Ga0059261_0138 0.17 -0.0 132,634 - Ga0059261_0138 0.17 +0.2 132,634 - Ga0059261_0138 0.17 -0.1 132,634 - Ga0059261_0138 0.17 +0.4 132,634 - Ga0059261_0138 0.17 -0.2 132,634 - Ga0059261_0138 0.17 +0.2 132,634 - Ga0059261_0138 0.17 -0.2 132,634 - Ga0059261_0138 0.17 -0.7 132,634 - Ga0059261_0138 0.17 +0.2 132,634 - Ga0059261_0138 0.17 +0.9 132,693 + Ga0059261_0138 0.41 +1.3 132,693 + Ga0059261_0138 0.41 -0.7 132,693 + Ga0059261_0138 0.41 -0.5 132,693 + Ga0059261_0138 0.41 -0.0 132,693 + Ga0059261_0138 0.41 -0.7 132,693 + Ga0059261_0138 0.41 -0.9 132,693 + Ga0059261_0138 0.41 +0.9 132,693 + Ga0059261_0138 0.41 +0.6 132,693 + Ga0059261_0138 0.41 -0.5 132,693 + Ga0059261_0138 0.41 -0.4 132,693 + Ga0059261_0138 0.41 -0.2 132,693 + Ga0059261_0138 0.41 +0.7 132,693 + Ga0059261_0138 0.41 -0.4 132,693 + Ga0059261_0138 0.41 -1.0 132,693 + Ga0059261_0138 0.41 -0.1 132,693 + Ga0059261_0138 0.41 -0.1 132,693 + Ga0059261_0138 0.41 +1.3 132,693 + -0.1 132,694 - Ga0059261_0138 0.41 -0.0 132,694 - Ga0059261_0138 0.41 -0.1 132,694 - Ga0059261_0138 0.41 -0.3 132,694 - Ga0059261_0138 0.41 -0.4 132,694 - Ga0059261_0138 0.41 +0.1 132,694 - Ga0059261_0138 0.41 -0.4 132,694 - Ga0059261_0138 0.41 -0.2 132,694 - Ga0059261_0138 0.41 +0.4 132,694 - -0.7 132,694 - Ga0059261_0138 0.41 -0.6 132,694 - Ga0059261_0138 0.41 -0.1 132,742 - Ga0059261_0138 0.60 -1.5 132,786 + Ga0059261_0138 0.78 -1.3 132,786 + Ga0059261_0138 0.78 -1.0 132,786 + Ga0059261_0138 0.78 -0.2 132,787 - Ga0059261_0138 0.78 +0.4 132,787 - Ga0059261_0138 0.78 -1.0 132,827 - -0.8 132,841 + -0.1 132,841 + -0.1 132,841 + -0.3 132,841 + +0.1 132,842 - +0.1 132,908 + -0.1 132,908 + +0.9 132,934 + -0.9 132,934 + +0.2 132,935 - -0.4 132,935 - -0.3 132,935 - +0.1 133,118 + +0.9 133,119 - Ga0059261_0139 0.25 -0.4 133,119 - Ga0059261_0139 0.25 -1.9 133,319 + Ga0059261_0139 0.43 +0.1 133,319 + Ga0059261_0139 0.43 -1.6 133,319 + Ga0059261_0139 0.43 +0.9 133,319 + Ga0059261_0139 0.43 +0.2 133,319 + Ga0059261_0139 0.43 -1.3 133,319 + Ga0059261_0139 0.43 +0.5 133,319 + Ga0059261_0139 0.43 -0.2 133,319 + Ga0059261_0139 0.43 +0.9 133,319 + Ga0059261_0139 0.43 +0.5 133,319 + Ga0059261_0139 0.43 -0.5 133,320 - Ga0059261_0139 0.43 -0.3 133,320 - Ga0059261_0139 0.43 -0.5 133,320 - Ga0059261_0139 0.43 -0.7 133,320 - Ga0059261_0139 0.43 +0.5 133,541 - Ga0059261_0139 0.63 +0.2
Or see this region's nucleotide sequence