Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00077

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00075 and CCNA_00076 are separated by 66 nucleotidesCCNA_00076 and CCNA_00077 overlap by 4 nucleotidesCCNA_00077 and CCNA_00078 are separated by 2 nucleotides CCNA_00075: CCNA_00075 - 3-ketoacyl-CoA thiolase, at 78,703 to 79,908 _00075 CCNA_00076: CCNA_00076 - hypothetical protein, at 79,975 to 80,358 _00076 CCNA_00077: CCNA_00077 - acyl-CoA dehydrogenase, long-chain specific, at 80,355 to 81,530 _00077 CCNA_00078: CCNA_00078 - acyl-CoA dehydrogenase, at 81,533 to 83,326 _00078 Position (kb) 80 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 79.357 kb on + strand, within CCNA_00075at 79.369 kb on + strand, within CCNA_00075at 79.429 kb on + strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.445 kb on - strand, within CCNA_00075at 79.460 kb on + strand, within CCNA_00075at 79.470 kb on - strand, within CCNA_00075at 79.491 kb on - strand, within CCNA_00075at 79.595 kb on + strand, within CCNA_00075at 79.612 kb on + strand, within CCNA_00075at 79.621 kb on + strand, within CCNA_00075at 79.643 kb on + strand, within CCNA_00075at 79.674 kb on - strand, within CCNA_00075at 79.689 kb on + strand, within CCNA_00075at 79.714 kb on + strand, within CCNA_00075at 79.731 kb on + strand, within CCNA_00075at 79.741 kb on + strand, within CCNA_00075at 79.749 kb on - strand, within CCNA_00075at 79.749 kb on - strand, within CCNA_00075at 79.761 kb on - strand, within CCNA_00075at 79.778 kb on - strand, within CCNA_00075at 79.779 kb on - strand, within CCNA_00075at 79.795 kb on + strandat 79.832 kb on + strandat 79.840 kb on - strandat 79.853 kb on + strandat 79.861 kb on - strandat 79.884 kb on + strandat 79.918 kb on - strandat 79.930 kb on + strandat 79.930 kb on + strandat 80.006 kb on - strandat 80.050 kb on + strand, within CCNA_00076at 80.100 kb on + strand, within CCNA_00076at 80.143 kb on - strand, within CCNA_00076at 80.148 kb on + strand, within CCNA_00076at 80.159 kb on - strand, within CCNA_00076at 80.213 kb on + strand, within CCNA_00076at 80.254 kb on + strand, within CCNA_00076at 80.254 kb on + strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.270 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.294 kb on + strand, within CCNA_00076at 80.324 kb on - strandat 80.360 kb on - strandat 80.393 kb on - strandat 80.414 kb on + strandat 80.508 kb on - strand, within CCNA_00077at 80.508 kb on - strand, within CCNA_00077at 80.521 kb on + strand, within CCNA_00077at 80.529 kb on - strand, within CCNA_00077at 80.556 kb on + strandat 80.581 kb on + strand, within CCNA_00077at 80.589 kb on - strand, within CCNA_00077at 80.600 kb on - strand, within CCNA_00077at 80.608 kb on - strand, within CCNA_00077at 80.620 kb on + strand, within CCNA_00077at 80.673 kb on + strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.706 kb on + strand, within CCNA_00077at 80.727 kb on + strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.804 kb on - strand, within CCNA_00077at 80.812 kb on + strand, within CCNA_00077at 80.820 kb on - strandat 80.856 kb on - strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.866 kb on - strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.916 kb on + strand, within CCNA_00077at 80.955 kb on + strand, within CCNA_00077at 80.955 kb on + strand, within CCNA_00077at 80.963 kb on - strand, within CCNA_00077at 81.007 kb on + strand, within CCNA_00077at 81.009 kb on + strand, within CCNA_00077at 81.009 kb on + strand, within CCNA_00077at 81.017 kb on - strand, within CCNA_00077at 81.021 kb on + strand, within CCNA_00077at 81.029 kb on - strand, within CCNA_00077at 81.036 kb on + strand, within CCNA_00077at 81.051 kb on - strand, within CCNA_00077at 81.062 kb on - strand, within CCNA_00077at 81.098 kb on - strand, within CCNA_00077at 81.130 kb on + strand, within CCNA_00077at 81.142 kb on + strand, within CCNA_00077at 81.142 kb on + strand, within CCNA_00077at 81.152 kb on + strand, within CCNA_00077at 81.155 kb on - strand, within CCNA_00077at 81.166 kb on + strand, within CCNA_00077at 81.207 kb on - strand, within CCNA_00077at 81.207 kb on - strand, within CCNA_00077at 81.214 kb on + strand, within CCNA_00077at 81.214 kb on + strand, within CCNA_00077at 81.240 kb on - strand, within CCNA_00077at 81.245 kb on - strand, within CCNA_00077at 81.254 kb on - strand, within CCNA_00077at 81.290 kb on + strand, within CCNA_00077at 81.290 kb on + strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.337 kb on + strandat 81.337 kb on + strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.351 kb on + strand, within CCNA_00077at 81.394 kb on + strand, within CCNA_00077at 81.409 kb on - strand, within CCNA_00077at 81.428 kb on + strandat 81.436 kb on - strandat 81.436 kb on - strandat 81.436 kb on - strandat 81.483 kb on + strandat 81.503 kb on - strandat 81.539 kb on - strandat 81.563 kb on - strandat 81.570 kb on + strandat 81.576 kb on + strandat 81.576 kb on + strandat 81.576 kb on + strandat 81.576 kb on + strandat 81.584 kb on - strandat 81.617 kb on - strandat 81.617 kb on - strandat 81.651 kb on + strandat 81.719 kb on + strand, within CCNA_00078at 81.727 kb on - strand, within CCNA_00078at 81.733 kb on - strand, within CCNA_00078at 81.749 kb on - strand, within CCNA_00078at 81.800 kb on + strand, within CCNA_00078at 81.819 kb on + strand, within CCNA_00078at 81.834 kb on - strand, within CCNA_00078at 81.848 kb on + strand, within CCNA_00078at 81.853 kb on + strand, within CCNA_00078at 81.856 kb on - strand, within CCNA_00078at 81.856 kb on - strand, within CCNA_00078at 81.861 kb on - strand, within CCNA_00078at 81.868 kb on + strand, within CCNA_00078at 81.868 kb on + strand, within CCNA_00078at 81.868 kb on + strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.905 kb on - strand, within CCNA_00078at 81.905 kb on - strand, within CCNA_00078at 81.942 kb on - strand, within CCNA_00078at 81.944 kb on + strand, within CCNA_00078at 81.951 kb on + strand, within CCNA_00078at 81.974 kb on + strand, within CCNA_00078at 81.982 kb on - strand, within CCNA_00078at 81.990 kb on + strand, within CCNA_00078at 82.007 kb on + strand, within CCNA_00078at 82.010 kb on - strand, within CCNA_00078at 82.015 kb on - strand, within CCNA_00078at 82.015 kb on - strand, within CCNA_00078at 82.015 kb on - strand, within CCNA_00078at 82.020 kb on - strand, within CCNA_00078at 82.029 kb on + strand, within CCNA_00078at 82.037 kb on - strand, within CCNA_00078at 82.037 kb on - strand, within CCNA_00078at 82.055 kb on - strand, within CCNA_00078at 82.079 kb on + strand, within CCNA_00078at 82.087 kb on - strand, within CCNA_00078at 82.135 kb on + strand, within CCNA_00078at 82.136 kb on - strand, within CCNA_00078at 82.136 kb on - strand, within CCNA_00078at 82.140 kb on + strand, within CCNA_00078at 82.153 kb on - strand, within CCNA_00078at 82.153 kb on - strand, within CCNA_00078at 82.158 kb on - strand, within CCNA_00078at 82.158 kb on - strand, within CCNA_00078at 82.159 kb on + strand, within CCNA_00078at 82.191 kb on + strand, within CCNA_00078at 82.199 kb on - strand, within CCNA_00078at 82.199 kb on - strand, within CCNA_00078at 82.199 kb on - strand, within CCNA_00078at 82.208 kb on - strand, within CCNA_00078at 82.214 kb on + strand, within CCNA_00078at 82.232 kb on - strand, within CCNA_00078at 82.232 kb on - strand, within CCNA_00078at 82.256 kb on - strand, within CCNA_00078at 82.260 kb on + strand, within CCNA_00078at 82.260 kb on + strand, within CCNA_00078at 82.268 kb on + strand, within CCNA_00078at 82.360 kb on - strand, within CCNA_00078at 82.365 kb on - strand, within CCNA_00078at 82.378 kb on - strand, within CCNA_00078at 82.396 kb on - strand, within CCNA_00078at 82.398 kb on + strand, within CCNA_00078at 82.403 kb on + strand, within CCNA_00078at 82.408 kb on + strand, within CCNA_00078at 82.411 kb on - strand, within CCNA_00078at 82.411 kb on - strand, within CCNA_00078at 82.418 kb on - strand, within CCNA_00078at 82.418 kb on - strand, within CCNA_00078at 82.459 kb on + strand, within CCNA_00078at 82.476 kb on + strand, within CCNA_00078at 82.510 kb on + strand, within CCNA_00078

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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79,357 + CCNA_00075 0.54 -1.0
79,369 + CCNA_00075 0.55 +1.3
79,429 + CCNA_00075 0.60 +0.3
79,437 - CCNA_00075 0.61 +0.5
79,437 - CCNA_00075 0.61 -1.1
79,437 - CCNA_00075 0.61 -0.2
79,437 - CCNA_00075 0.61 +0.7
79,437 - CCNA_00075 0.61 +0.7
79,445 - CCNA_00075 0.62 -1.0
79,460 + CCNA_00075 0.63 +0.8
79,470 - CCNA_00075 0.64 +2.5
79,491 - CCNA_00075 0.65 -1.0
79,595 + CCNA_00075 0.74 +0.3
79,612 + CCNA_00075 0.75 +0.3
79,621 + CCNA_00075 0.76 +1.3
79,643 + CCNA_00075 0.78 -0.9
79,674 - CCNA_00075 0.81 +0.6
79,689 + CCNA_00075 0.82 -2.2
79,714 + CCNA_00075 0.84 -1.2
79,731 + CCNA_00075 0.85 -0.9
79,741 + CCNA_00075 0.86 -0.5
79,749 - CCNA_00075 0.87 +0.4
79,749 - CCNA_00075 0.87 +0.6
79,761 - CCNA_00075 0.88 -0.6
79,778 - CCNA_00075 0.89 +0.1
79,779 - CCNA_00075 0.89 -0.8
79,795 + -0.4
79,832 + -0.5
79,840 - +0.7
79,853 + -2.7
79,861 - -0.9
79,884 + -2.2
79,918 - -0.2
79,930 + -0.2
79,930 + +3.3
80,006 - +1.1
80,050 + CCNA_00076 0.20 -2.2
80,100 + CCNA_00076 0.33 -1.8
80,143 - CCNA_00076 0.44 -0.6
80,148 + CCNA_00076 0.45 -0.2
80,159 - CCNA_00076 0.48 +0.7
80,213 + CCNA_00076 0.62 -2.7
80,254 + CCNA_00076 0.73 -0.5
80,254 + CCNA_00076 0.73 +1.3
80,262 - CCNA_00076 0.75 +0.9
80,262 - CCNA_00076 0.75 -0.3
80,262 - CCNA_00076 0.75 +0.4
80,270 + CCNA_00076 0.77 +0.1
80,275 + CCNA_00076 0.78 -1.2
80,275 + CCNA_00076 0.78 -0.0
80,275 + CCNA_00076 0.78 -3.0
80,275 + CCNA_00076 0.78 -0.5
80,283 - CCNA_00076 0.80 +0.9
80,283 - CCNA_00076 0.80 -1.7
80,283 - CCNA_00076 0.80 +0.8
80,294 + CCNA_00076 0.83 +0.5
80,324 - +0.3
80,360 - +0.6
80,393 - +0.3
80,414 + -2.3
80,508 - CCNA_00077 0.13 +0.7
80,508 - CCNA_00077 0.13 +2.5
80,521 + CCNA_00077 0.14 -1.0
80,529 - CCNA_00077 0.15 +0.5
80,556 + +0.0
80,581 + CCNA_00077 0.19 -0.4
80,589 - CCNA_00077 0.20 -0.7
80,600 - CCNA_00077 0.21 -0.3
80,608 - CCNA_00077 0.22 +0.1
80,620 + CCNA_00077 0.23 +0.8
80,673 + CCNA_00077 0.27 +0.9
80,681 - CCNA_00077 0.28 +0.3
80,681 - CCNA_00077 0.28 +1.0
80,681 - CCNA_00077 0.28 +1.4
80,706 + CCNA_00077 0.30 -1.0
80,727 + CCNA_00077 0.32 -0.6
80,742 - CCNA_00077 0.33 +0.5
80,742 - CCNA_00077 0.33 +0.5
80,742 - CCNA_00077 0.33 -0.7
80,754 + CCNA_00077 0.34 -2.1
80,754 + CCNA_00077 0.34 -2.2
80,754 + CCNA_00077 0.34 -2.6
80,804 - CCNA_00077 0.38 -0.5
80,812 + CCNA_00077 0.39 -0.7
80,820 - +0.0
80,856 - CCNA_00077 0.43 +0.5
80,858 + CCNA_00077 0.43 -0.2
80,858 + CCNA_00077 0.43 -2.1
80,866 - CCNA_00077 0.43 -1.5
80,868 + CCNA_00077 0.44 -1.4
80,876 - CCNA_00077 0.44 -0.6
80,876 - CCNA_00077 0.44 -0.3
80,876 - CCNA_00077 0.44 -1.1
80,916 + CCNA_00077 0.48 -0.4
80,955 + CCNA_00077 0.51 -2.9
80,955 + CCNA_00077 0.51 -0.8
80,963 - CCNA_00077 0.52 +1.0
81,007 + CCNA_00077 0.55 +0.0
81,009 + CCNA_00077 0.56 -1.1
81,009 + CCNA_00077 0.56 -2.2
81,017 - CCNA_00077 0.56 -0.7
81,021 + CCNA_00077 0.57 +0.8
81,029 - CCNA_00077 0.57 -0.1
81,036 + CCNA_00077 0.58 -0.2
81,051 - CCNA_00077 0.59 +1.1
81,062 - CCNA_00077 0.60 -0.2
81,098 - CCNA_00077 0.63 -1.8
81,130 + CCNA_00077 0.66 +0.9
81,142 + CCNA_00077 0.67 -1.0
81,142 + CCNA_00077 0.67 -0.9
81,152 + CCNA_00077 0.68 -2.2
81,155 - CCNA_00077 0.68 +1.0
81,166 + CCNA_00077 0.69 -0.1
81,207 - CCNA_00077 0.72 +0.3
81,207 - CCNA_00077 0.72 -0.9
81,214 + CCNA_00077 0.73 +0.2
81,214 + CCNA_00077 0.73 -0.1
81,240 - CCNA_00077 0.75 -2.5
81,245 - CCNA_00077 0.76 -0.1
81,254 - CCNA_00077 0.76 +0.8
81,290 + CCNA_00077 0.80 -1.2
81,290 + CCNA_00077 0.80 -1.0
81,337 + CCNA_00077 0.84 +0.3
81,337 + CCNA_00077 0.84 +0.3
81,337 + CCNA_00077 0.84 +0.2
81,337 + +1.3
81,337 + CCNA_00077 0.84 -1.7
81,345 - CCNA_00077 0.84 -0.1
81,345 - CCNA_00077 0.84 -0.0
81,345 - CCNA_00077 0.84 -0.1
81,345 - CCNA_00077 0.84 +0.3
81,345 - CCNA_00077 0.84 +1.0
81,351 + CCNA_00077 0.85 -1.8
81,394 + CCNA_00077 0.88 -0.7
81,409 - CCNA_00077 0.90 +0.9
81,428 + -0.8
81,436 - +1.1
81,436 - +1.2
81,436 - +2.0
81,483 + -0.8
81,503 - +1.9
81,539 - +0.5
81,563 - +1.7
81,570 + +0.2
81,576 + +0.1
81,576 + -0.6
81,576 + +1.3
81,576 + -0.7
81,584 - +1.2
81,617 - +0.4
81,617 - +1.1
81,651 + -1.4
81,719 + CCNA_00078 0.10 -1.5
81,727 - CCNA_00078 0.11 +1.2
81,733 - CCNA_00078 0.11 +1.4
81,749 - CCNA_00078 0.12 +1.3
81,800 + CCNA_00078 0.15 -0.5
81,819 + CCNA_00078 0.16 -1.2
81,834 - CCNA_00078 0.17 +1.2
81,848 + CCNA_00078 0.18 -1.5
81,853 + CCNA_00078 0.18 -0.4
81,856 - CCNA_00078 0.18 +1.1
81,856 - CCNA_00078 0.18 +0.9
81,861 - CCNA_00078 0.18 +0.3
81,868 + CCNA_00078 0.19 -0.0
81,868 + CCNA_00078 0.19 -2.8
81,868 + CCNA_00078 0.19 +0.9
81,876 - CCNA_00078 0.19 +0.5
81,876 - CCNA_00078 0.19 +1.1
81,876 - CCNA_00078 0.19 +0.4
81,876 - CCNA_00078 0.19 +1.7
81,905 - CCNA_00078 0.21 +1.6
81,905 - CCNA_00078 0.21 +1.0
81,942 - CCNA_00078 0.23 +1.9
81,944 + CCNA_00078 0.23 -1.3
81,951 + CCNA_00078 0.23 +1.0
81,974 + CCNA_00078 0.25 -0.7
81,982 - CCNA_00078 0.25 +1.0
81,990 + CCNA_00078 0.25 +0.8
82,007 + CCNA_00078 0.26 -0.4
82,010 - CCNA_00078 0.27 +1.2
82,015 - CCNA_00078 0.27 +0.4
82,015 - CCNA_00078 0.27 +1.2
82,015 - CCNA_00078 0.27 +1.0
82,020 - CCNA_00078 0.27 +0.2
82,029 + CCNA_00078 0.28 -1.7
82,037 - CCNA_00078 0.28 +0.1
82,037 - CCNA_00078 0.28 +0.6
82,055 - CCNA_00078 0.29 +1.0
82,079 + CCNA_00078 0.30 +0.5
82,087 - CCNA_00078 0.31 +1.7
82,135 + CCNA_00078 0.34 -1.4
82,136 - CCNA_00078 0.34 +1.4
82,136 - CCNA_00078 0.34 +0.8
82,140 + CCNA_00078 0.34 -0.3
82,153 - CCNA_00078 0.35 +1.7
82,153 - CCNA_00078 0.35 +1.9
82,158 - CCNA_00078 0.35 +0.1
82,158 - CCNA_00078 0.35 +0.2
82,159 + CCNA_00078 0.35 +0.6
82,191 + CCNA_00078 0.37 +0.1
82,199 - CCNA_00078 0.37 +0.9
82,199 - CCNA_00078 0.37 +0.0
82,199 - CCNA_00078 0.37 +1.3
82,208 - CCNA_00078 0.38 +0.5
82,214 + CCNA_00078 0.38 -0.2
82,232 - CCNA_00078 0.39 +1.2
82,232 - CCNA_00078 0.39 +1.5
82,256 - CCNA_00078 0.40 +0.5
82,260 + CCNA_00078 0.41 -2.6
82,260 + CCNA_00078 0.41 -0.3
82,268 + CCNA_00078 0.41 +1.7
82,360 - CCNA_00078 0.46 +1.2
82,365 - CCNA_00078 0.46 +1.0
82,378 - CCNA_00078 0.47 +1.5
82,396 - CCNA_00078 0.48 +0.8
82,398 + CCNA_00078 0.48 +1.1
82,403 + CCNA_00078 0.48 -0.1
82,408 + CCNA_00078 0.49 -0.5
82,411 - CCNA_00078 0.49 +1.3
82,411 - CCNA_00078 0.49 +1.0
82,418 - CCNA_00078 0.49 +1.8
82,418 - CCNA_00078 0.49 +2.3
82,459 + CCNA_00078 0.52 -0.2
82,476 + CCNA_00078 0.53 -0.2
82,510 + CCNA_00078 0.54 -2.4

Or see this region's nucleotide sequence