Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21545 and CA265_RS21550 are separated by 92 nucleotides CA265_RS21550 and CA265_RS21555 are separated by 213 nucleotides
CA265_RS21545: CA265_RS21545 - hypothetical protein, at 5,304,656 to 5,305,903
_RS21545
CA265_RS21550: CA265_RS21550 - zinc-dependent metalloprotease, at 5,305,996 to 5,308,512
_RS21550
CA265_RS21555: CA265_RS21555 - hypothetical protein, at 5,308,726 to 5,309,601
_RS21555
Position (kb) 5305
5306
5307
5308
5309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5305.008 kb on + strand, within CA265_RS21545 at 5305.009 kb on - strand, within CA265_RS21545 at 5305.016 kb on - strand, within CA265_RS21545 at 5305.016 kb on - strand, within CA265_RS21545 at 5305.025 kb on - strand, within CA265_RS21545 at 5305.030 kb on + strand, within CA265_RS21545 at 5305.032 kb on + strand, within CA265_RS21545 at 5305.033 kb on - strand, within CA265_RS21545 at 5305.189 kb on + strand, within CA265_RS21545 at 5305.193 kb on + strand, within CA265_RS21545 at 5305.193 kb on + strand, within CA265_RS21545 at 5305.213 kb on + strand, within CA265_RS21545 at 5305.213 kb on + strand, within CA265_RS21545 at 5305.239 kb on - strand, within CA265_RS21545 at 5305.241 kb on - strand, within CA265_RS21545 at 5305.241 kb on - strand, within CA265_RS21545 at 5305.393 kb on + strand, within CA265_RS21545 at 5305.393 kb on + strand, within CA265_RS21545 at 5305.408 kb on + strand, within CA265_RS21545 at 5305.416 kb on - strand, within CA265_RS21545 at 5305.428 kb on + strand, within CA265_RS21545 at 5305.511 kb on + strand, within CA265_RS21545 at 5305.549 kb on - strand, within CA265_RS21545 at 5305.573 kb on + strand, within CA265_RS21545 at 5305.592 kb on - strand, within CA265_RS21545 at 5305.639 kb on + strand, within CA265_RS21545 at 5305.711 kb on + strand, within CA265_RS21545 at 5305.734 kb on + strand, within CA265_RS21545 at 5305.735 kb on - strand, within CA265_RS21545 at 5305.776 kb on + strand, within CA265_RS21545 at 5305.777 kb on - strand, within CA265_RS21545 at 5305.784 kb on + strand at 5305.784 kb on + strand at 5305.785 kb on - strand at 5305.786 kb on + strand at 5305.814 kb on - strand at 5305.837 kb on - strand at 5305.857 kb on - strand at 5305.858 kb on + strand at 5305.965 kb on + strand at 5305.965 kb on + strand at 5305.966 kb on - strand at 5305.987 kb on + strand at 5305.988 kb on - strand at 5305.992 kb on - strand at 5305.992 kb on - strand at 5305.992 kb on - strand at 5305.992 kb on - strand at 5306.006 kb on + strand at 5306.016 kb on - strand at 5306.036 kb on + strand at 5306.037 kb on - strand at 5306.066 kb on + strand at 5306.066 kb on + strand at 5306.066 kb on + strand at 5306.067 kb on - strand at 5306.069 kb on - strand at 5306.175 kb on - strand at 5306.175 kb on - strand at 5306.233 kb on - strand at 5306.233 kb on - strand at 5306.264 kb on + strand, within CA265_RS21550 at 5306.303 kb on + strand, within CA265_RS21550 at 5306.335 kb on + strand, within CA265_RS21550 at 5306.442 kb on + strand, within CA265_RS21550 at 5306.443 kb on - strand, within CA265_RS21550 at 5306.446 kb on + strand, within CA265_RS21550 at 5306.507 kb on - strand, within CA265_RS21550 at 5306.508 kb on + strand, within CA265_RS21550 at 5306.531 kb on + strand, within CA265_RS21550 at 5306.531 kb on + strand, within CA265_RS21550 at 5306.564 kb on + strand, within CA265_RS21550 at 5306.565 kb on - strand, within CA265_RS21550 at 5306.604 kb on + strand, within CA265_RS21550 at 5306.617 kb on + strand, within CA265_RS21550 at 5306.617 kb on + strand, within CA265_RS21550 at 5306.617 kb on + strand, within CA265_RS21550 at 5306.618 kb on - strand, within CA265_RS21550 at 5306.676 kb on - strand, within CA265_RS21550 at 5306.692 kb on + strand, within CA265_RS21550 at 5306.721 kb on + strand, within CA265_RS21550 at 5306.721 kb on + strand, within CA265_RS21550 at 5306.721 kb on + strand, within CA265_RS21550 at 5306.722 kb on - strand, within CA265_RS21550 at 5306.752 kb on - strand, within CA265_RS21550 at 5306.758 kb on - strand, within CA265_RS21550 at 5306.784 kb on - strand, within CA265_RS21550 at 5306.795 kb on + strand, within CA265_RS21550 at 5306.868 kb on + strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.878 kb on - strand, within CA265_RS21550 at 5306.908 kb on - strand, within CA265_RS21550 at 5306.918 kb on - strand, within CA265_RS21550 at 5306.958 kb on - strand, within CA265_RS21550 at 5307.154 kb on - strand, within CA265_RS21550 at 5307.154 kb on - strand, within CA265_RS21550 at 5307.166 kb on + strand, within CA265_RS21550 at 5307.226 kb on + strand, within CA265_RS21550 at 5307.231 kb on + strand, within CA265_RS21550 at 5307.232 kb on - strand, within CA265_RS21550 at 5307.237 kb on + strand, within CA265_RS21550 at 5307.259 kb on + strand, within CA265_RS21550 at 5307.266 kb on + strand, within CA265_RS21550 at 5307.266 kb on + strand, within CA265_RS21550 at 5307.293 kb on + strand, within CA265_RS21550 at 5307.294 kb on - strand, within CA265_RS21550 at 5307.298 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.371 kb on + strand, within CA265_RS21550 at 5307.377 kb on + strand, within CA265_RS21550 at 5307.378 kb on - strand, within CA265_RS21550 at 5307.423 kb on - strand, within CA265_RS21550 at 5307.439 kb on - strand, within CA265_RS21550 at 5307.453 kb on + strand, within CA265_RS21550 at 5307.466 kb on - strand, within CA265_RS21550 at 5307.490 kb on + strand, within CA265_RS21550 at 5307.491 kb on - strand, within CA265_RS21550 at 5307.549 kb on + strand, within CA265_RS21550 at 5307.571 kb on + strand, within CA265_RS21550 at 5307.649 kb on - strand, within CA265_RS21550 at 5307.658 kb on + strand, within CA265_RS21550 at 5307.686 kb on + strand, within CA265_RS21550 at 5307.687 kb on - strand, within CA265_RS21550 at 5307.738 kb on + strand, within CA265_RS21550 at 5307.743 kb on - strand, within CA265_RS21550 at 5307.774 kb on + strand, within CA265_RS21550 at 5307.832 kb on + strand, within CA265_RS21550 at 5307.856 kb on - strand, within CA265_RS21550 at 5307.862 kb on + strand, within CA265_RS21550 at 5307.863 kb on - strand, within CA265_RS21550 at 5307.910 kb on - strand, within CA265_RS21550 at 5307.938 kb on - strand, within CA265_RS21550 at 5307.938 kb on - strand, within CA265_RS21550 at 5307.943 kb on + strand, within CA265_RS21550 at 5307.943 kb on + strand, within CA265_RS21550 at 5307.944 kb on - strand, within CA265_RS21550 at 5307.999 kb on + strand, within CA265_RS21550 at 5308.055 kb on + strand, within CA265_RS21550 at 5308.056 kb on - strand, within CA265_RS21550 at 5308.071 kb on + strand, within CA265_RS21550 at 5308.072 kb on - strand, within CA265_RS21550 at 5308.090 kb on - strand, within CA265_RS21550 at 5308.103 kb on + strand, within CA265_RS21550 at 5308.104 kb on - strand, within CA265_RS21550 at 5308.106 kb on + strand, within CA265_RS21550 at 5308.134 kb on - strand, within CA265_RS21550 at 5308.137 kb on + strand, within CA265_RS21550 at 5308.196 kb on + strand, within CA265_RS21550 at 5308.258 kb on + strand, within CA265_RS21550 at 5308.259 kb on - strand, within CA265_RS21550 at 5308.344 kb on - strand at 5308.364 kb on + strand at 5308.450 kb on - strand at 5308.463 kb on - strand at 5308.472 kb on + strand at 5308.477 kb on - strand at 5308.496 kb on + strand at 5308.558 kb on + strand at 5308.579 kb on + strand at 5308.579 kb on + strand at 5308.662 kb on + strand at 5308.772 kb on + strand at 5308.773 kb on - strand at 5308.930 kb on - strand, within CA265_RS21555 at 5308.946 kb on + strand, within CA265_RS21555 at 5309.097 kb on + strand, within CA265_RS21555 at 5309.216 kb on + strand, within CA265_RS21555 at 5309.259 kb on - strand, within CA265_RS21555 at 5309.280 kb on - strand, within CA265_RS21555 at 5309.330 kb on + strand, within CA265_RS21555 at 5309.470 kb on - strand, within CA265_RS21555
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 5,305,008 + CA265_RS21545 0.28 +0.2 5,305,009 - CA265_RS21545 0.28 +1.0 5,305,016 - CA265_RS21545 0.29 -2.2 5,305,016 - CA265_RS21545 0.29 -1.9 5,305,025 - CA265_RS21545 0.30 +1.2 5,305,030 + CA265_RS21545 0.30 +0.8 5,305,032 + CA265_RS21545 0.30 -0.3 5,305,033 - CA265_RS21545 0.30 +1.5 5,305,189 + CA265_RS21545 0.43 -0.9 5,305,193 + CA265_RS21545 0.43 -1.0 5,305,193 + CA265_RS21545 0.43 -0.3 5,305,213 + CA265_RS21545 0.45 -1.9 5,305,213 + CA265_RS21545 0.45 +1.0 5,305,239 - CA265_RS21545 0.47 -0.8 5,305,241 - CA265_RS21545 0.47 +1.6 5,305,241 - CA265_RS21545 0.47 +1.9 5,305,393 + CA265_RS21545 0.59 -0.3 5,305,393 + CA265_RS21545 0.59 +0.7 5,305,408 + CA265_RS21545 0.60 -0.8 5,305,416 - CA265_RS21545 0.61 +3.0 5,305,428 + CA265_RS21545 0.62 -1.0 5,305,511 + CA265_RS21545 0.69 -1.2 5,305,549 - CA265_RS21545 0.72 +0.1 5,305,573 + CA265_RS21545 0.73 +1.3 5,305,592 - CA265_RS21545 0.75 -1.7 5,305,639 + CA265_RS21545 0.79 +3.8 5,305,711 + CA265_RS21545 0.85 +1.4 5,305,734 + CA265_RS21545 0.86 +1.5 5,305,735 - CA265_RS21545 0.86 +1.0 5,305,776 + CA265_RS21545 0.90 +1.2 5,305,777 - CA265_RS21545 0.90 +2.6 5,305,784 + -1.3 5,305,784 + +2.1 5,305,785 - -0.7 5,305,786 + -1.3 5,305,814 - -1.8 5,305,837 - +0.8 5,305,857 - -0.1 5,305,858 + -2.5 5,305,965 + +0.5 5,305,965 + +0.6 5,305,966 - -2.3 5,305,987 + +0.6 5,305,988 - +2.1 5,305,992 - +2.4 5,305,992 - -0.1 5,305,992 - +1.2 5,305,992 - +2.6 5,306,006 + -3.9 5,306,016 - +1.7 5,306,036 + -0.7 5,306,037 - -3.4 5,306,066 + -0.8 5,306,066 + -0.2 5,306,066 + -2.1 5,306,067 - +0.6 5,306,069 - -4.0 5,306,175 - -0.4 5,306,175 - +0.9 5,306,233 - -1.1 5,306,233 - -1.1 5,306,264 + CA265_RS21550 0.11 +1.1 5,306,303 + CA265_RS21550 0.12 +0.6 5,306,335 + CA265_RS21550 0.13 -2.5 5,306,442 + CA265_RS21550 0.18 +0.5 5,306,443 - CA265_RS21550 0.18 -0.3 5,306,446 + CA265_RS21550 0.18 -2.0 5,306,507 - CA265_RS21550 0.20 +0.6 5,306,508 + CA265_RS21550 0.20 -0.3 5,306,531 + CA265_RS21550 0.21 +0.8 5,306,531 + CA265_RS21550 0.21 -1.5 5,306,564 + CA265_RS21550 0.23 -0.6 5,306,565 - CA265_RS21550 0.23 +0.7 5,306,604 + CA265_RS21550 0.24 +0.1 5,306,617 + CA265_RS21550 0.25 -0.1 5,306,617 + CA265_RS21550 0.25 -2.2 5,306,617 + CA265_RS21550 0.25 -3.4 5,306,618 - CA265_RS21550 0.25 +0.2 5,306,676 - CA265_RS21550 0.27 -0.6 5,306,692 + CA265_RS21550 0.28 +0.6 5,306,721 + CA265_RS21550 0.29 -1.8 5,306,721 + CA265_RS21550 0.29 -0.9 5,306,721 + CA265_RS21550 0.29 -1.2 5,306,722 - CA265_RS21550 0.29 -1.9 5,306,752 - CA265_RS21550 0.30 -0.7 5,306,758 - CA265_RS21550 0.30 -1.5 5,306,784 - CA265_RS21550 0.31 -2.7 5,306,795 + CA265_RS21550 0.32 +1.7 5,306,868 + CA265_RS21550 0.35 -1.1 5,306,876 - CA265_RS21550 0.35 -2.6 5,306,876 - CA265_RS21550 0.35 +0.5 5,306,876 - CA265_RS21550 0.35 +0.4 5,306,876 - CA265_RS21550 0.35 +1.0 5,306,878 - CA265_RS21550 0.35 -2.3 5,306,908 - CA265_RS21550 0.36 +0.7 5,306,918 - CA265_RS21550 0.37 +2.1 5,306,958 - CA265_RS21550 0.38 +0.4 5,307,154 - CA265_RS21550 0.46 +0.2 5,307,154 - CA265_RS21550 0.46 -1.0 5,307,166 + CA265_RS21550 0.46 +0.6 5,307,226 + CA265_RS21550 0.49 -0.2 5,307,231 + CA265_RS21550 0.49 -1.2 5,307,232 - CA265_RS21550 0.49 +0.7 5,307,237 + CA265_RS21550 0.49 -1.3 5,307,259 + CA265_RS21550 0.50 +2.8 5,307,266 + CA265_RS21550 0.50 -1.9 5,307,266 + CA265_RS21550 0.50 +0.6 5,307,293 + CA265_RS21550 0.52 -0.3 5,307,294 - CA265_RS21550 0.52 +0.2 5,307,298 - CA265_RS21550 0.52 -2.2 5,307,367 - CA265_RS21550 0.54 +2.3 5,307,367 - CA265_RS21550 0.54 +0.7 5,307,367 - CA265_RS21550 0.54 -0.8 5,307,367 - CA265_RS21550 0.54 -0.5 5,307,371 + CA265_RS21550 0.55 -0.3 5,307,377 + CA265_RS21550 0.55 -1.2 5,307,378 - CA265_RS21550 0.55 +1.8 5,307,423 - CA265_RS21550 0.57 -2.0 5,307,439 - CA265_RS21550 0.57 -1.1 5,307,453 + CA265_RS21550 0.58 -0.5 5,307,466 - CA265_RS21550 0.58 -2.4 5,307,490 + CA265_RS21550 0.59 -0.8 5,307,491 - CA265_RS21550 0.59 -1.2 5,307,549 + CA265_RS21550 0.62 -1.2 5,307,571 + CA265_RS21550 0.63 -0.6 5,307,649 - CA265_RS21550 0.66 -1.8 5,307,658 + CA265_RS21550 0.66 -2.0 5,307,686 + CA265_RS21550 0.67 -0.9 5,307,687 - CA265_RS21550 0.67 -0.1 5,307,738 + CA265_RS21550 0.69 -0.3 5,307,743 - CA265_RS21550 0.69 +1.5 5,307,774 + CA265_RS21550 0.71 -0.2 5,307,832 + CA265_RS21550 0.73 -2.8 5,307,856 - CA265_RS21550 0.74 +1.2 5,307,862 + CA265_RS21550 0.74 -0.1 5,307,863 - CA265_RS21550 0.74 -0.9 5,307,910 - CA265_RS21550 0.76 -1.7 5,307,938 - CA265_RS21550 0.77 +0.2 5,307,938 - CA265_RS21550 0.77 +1.3 5,307,943 + CA265_RS21550 0.77 -2.0 5,307,943 + CA265_RS21550 0.77 +0.7 5,307,944 - CA265_RS21550 0.77 +0.3 5,307,999 + CA265_RS21550 0.80 +0.1 5,308,055 + CA265_RS21550 0.82 -0.8 5,308,056 - CA265_RS21550 0.82 +1.5 5,308,071 + CA265_RS21550 0.82 -0.1 5,308,072 - CA265_RS21550 0.82 -2.0 5,308,090 - CA265_RS21550 0.83 -1.2 5,308,103 + CA265_RS21550 0.84 -1.0 5,308,104 - CA265_RS21550 0.84 -1.6 5,308,106 + CA265_RS21550 0.84 +0.7 5,308,134 - CA265_RS21550 0.85 -1.8 5,308,137 + CA265_RS21550 0.85 -1.0 5,308,196 + CA265_RS21550 0.87 -0.8 5,308,258 + CA265_RS21550 0.90 -1.0 5,308,259 - CA265_RS21550 0.90 +0.1 5,308,344 - +0.8 5,308,364 + -3.4 5,308,450 - -0.7 5,308,463 - +0.9 5,308,472 + +0.2 5,308,477 - +0.7 5,308,496 + -1.6 5,308,558 + +0.8 5,308,579 + -1.1 5,308,579 + -2.1 5,308,662 + -2.6 5,308,772 + +1.8 5,308,773 - -0.2 5,308,930 - CA265_RS21555 0.23 -1.4 5,308,946 + CA265_RS21555 0.25 +0.9 5,309,097 + CA265_RS21555 0.42 -0.1 5,309,216 + CA265_RS21555 0.56 +1.2 5,309,259 - CA265_RS21555 0.61 +0.7 5,309,280 - CA265_RS21555 0.63 +0.9 5,309,330 + CA265_RS21555 0.69 +0.7 5,309,470 - CA265_RS21555 0.85 -0.5
Or see this region's nucleotide sequence