Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16795

Experiment: R2A with copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS16790 and CA265_RS16795 are separated by 85 nucleotidesCA265_RS16795 and CA265_RS16800 are separated by 61 nucleotidesCA265_RS16800 and CA265_RS16805 are separated by 152 nucleotides CA265_RS16790: CA265_RS16790 - DNA-directed RNA polymerase subunit alpha, at 4,213,647 to 4,214,639 _RS16790 CA265_RS16795: CA265_RS16795 - 30S ribosomal protein S4, at 4,214,725 to 4,215,333 _RS16795 CA265_RS16800: CA265_RS16800 - 30S ribosomal protein S11, at 4,215,395 to 4,215,784 _RS16800 CA265_RS16805: CA265_RS16805 - 30S ribosomal protein S13, at 4,215,937 to 4,216,314 _RS16805 Position (kb) 4214 4215 4216Strain fitness (log2 ratio) -1 0 1at 4214.675 kb on - strandat 4214.711 kb on - strandat 4214.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
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4,214,675 - +0.2
4,214,711 - +0.7
4,214,711 - -0.4

Or see this region's nucleotide sequence