Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS06350 and CA265_RS06355 overlap by 8 nucleotides CA265_RS06355 and CA265_RS06360 are separated by 136 nucleotides CA265_RS06360 and CA265_RS06365 are separated by 20 nucleotides
CA265_RS06350: CA265_RS06350 - hypothetical protein, at 1,558,396 to 1,559,184
_RS06350
CA265_RS06355: CA265_RS06355 - DNA-binding response regulator, at 1,559,177 to 1,559,836
_RS06355
CA265_RS06360: CA265_RS06360 - hypothetical protein, at 1,559,973 to 1,561,502
_RS06360
CA265_RS06365: CA265_RS06365 - hypothetical protein, at 1,561,523 to 1,562,545
_RS06365
Position (kb) 1559
1560
1561
1562 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1559.026 kb on - strand, within CA265_RS06350 at 1559.093 kb on + strand, within CA265_RS06350 at 1559.093 kb on + strand, within CA265_RS06350 at 1559.094 kb on - strand, within CA265_RS06350 at 1559.176 kb on + strand at 1559.177 kb on - strand at 1559.256 kb on - strand, within CA265_RS06355 at 1559.256 kb on - strand, within CA265_RS06355 at 1559.275 kb on - strand, within CA265_RS06355 at 1559.275 kb on - strand, within CA265_RS06355 at 1559.275 kb on - strand, within CA265_RS06355 at 1559.305 kb on + strand, within CA265_RS06355 at 1559.356 kb on - strand, within CA265_RS06355 at 1559.359 kb on + strand, within CA265_RS06355 at 1559.379 kb on - strand, within CA265_RS06355 at 1559.419 kb on - strand, within CA265_RS06355 at 1559.422 kb on + strand, within CA265_RS06355 at 1559.423 kb on - strand, within CA265_RS06355 at 1559.423 kb on - strand, within CA265_RS06355 at 1559.423 kb on - strand, within CA265_RS06355 at 1559.424 kb on + strand, within CA265_RS06355 at 1559.458 kb on + strand, within CA265_RS06355 at 1559.459 kb on - strand, within CA265_RS06355 at 1559.492 kb on + strand, within CA265_RS06355 at 1559.544 kb on + strand, within CA265_RS06355 at 1559.545 kb on - strand, within CA265_RS06355 at 1559.559 kb on - strand, within CA265_RS06355 at 1559.559 kb on - strand, within CA265_RS06355 at 1559.565 kb on - strand, within CA265_RS06355 at 1559.737 kb on + strand, within CA265_RS06355 at 1559.738 kb on - strand, within CA265_RS06355 at 1559.824 kb on - strand at 1559.865 kb on + strand at 1559.866 kb on - strand at 1559.872 kb on - strand at 1559.913 kb on - strand at 1559.937 kb on + strand at 1559.956 kb on - strand at 1559.960 kb on + strand at 1559.961 kb on - strand at 1559.982 kb on + strand at 1560.020 kb on + strand at 1560.021 kb on - strand at 1560.041 kb on + strand at 1560.041 kb on + strand at 1560.041 kb on + strand at 1560.042 kb on - strand at 1560.086 kb on - strand at 1560.116 kb on + strand at 1560.116 kb on + strand at 1560.116 kb on + strand at 1560.117 kb on - strand at 1560.120 kb on + strand at 1560.121 kb on - strand at 1560.148 kb on + strand, within CA265_RS06360 at 1560.216 kb on + strand, within CA265_RS06360 at 1560.275 kb on + strand, within CA265_RS06360 at 1560.276 kb on - strand, within CA265_RS06360 at 1560.278 kb on - strand, within CA265_RS06360 at 1560.317 kb on + strand, within CA265_RS06360 at 1560.319 kb on - strand, within CA265_RS06360 at 1560.359 kb on - strand, within CA265_RS06360 at 1560.363 kb on + strand, within CA265_RS06360 at 1560.364 kb on - strand, within CA265_RS06360 at 1560.368 kb on - strand, within CA265_RS06360 at 1560.396 kb on - strand, within CA265_RS06360 at 1560.402 kb on + strand, within CA265_RS06360 at 1560.402 kb on + strand, within CA265_RS06360 at 1560.403 kb on - strand at 1560.405 kb on + strand, within CA265_RS06360 at 1560.405 kb on + strand, within CA265_RS06360 at 1560.440 kb on + strand, within CA265_RS06360 at 1560.444 kb on + strand, within CA265_RS06360 at 1560.445 kb on - strand, within CA265_RS06360 at 1560.461 kb on + strand, within CA265_RS06360 at 1560.461 kb on + strand, within CA265_RS06360 at 1560.461 kb on + strand, within CA265_RS06360 at 1560.466 kb on + strand, within CA265_RS06360 at 1560.470 kb on + strand, within CA265_RS06360 at 1560.545 kb on + strand, within CA265_RS06360 at 1560.545 kb on + strand, within CA265_RS06360 at 1560.545 kb on + strand, within CA265_RS06360 at 1560.546 kb on - strand, within CA265_RS06360 at 1560.594 kb on + strand, within CA265_RS06360 at 1560.630 kb on + strand, within CA265_RS06360 at 1560.680 kb on + strand, within CA265_RS06360 at 1560.682 kb on + strand, within CA265_RS06360 at 1560.700 kb on + strand, within CA265_RS06360 at 1560.715 kb on - strand, within CA265_RS06360 at 1560.715 kb on - strand, within CA265_RS06360 at 1560.807 kb on - strand, within CA265_RS06360 at 1560.809 kb on - strand, within CA265_RS06360 at 1560.811 kb on - strand, within CA265_RS06360 at 1560.907 kb on + strand, within CA265_RS06360 at 1560.957 kb on + strand, within CA265_RS06360 at 1561.020 kb on + strand, within CA265_RS06360 at 1561.020 kb on + strand, within CA265_RS06360 at 1561.021 kb on - strand, within CA265_RS06360 at 1561.021 kb on - strand, within CA265_RS06360 at 1561.021 kb on - strand, within CA265_RS06360 at 1561.024 kb on + strand, within CA265_RS06360 at 1561.024 kb on + strand, within CA265_RS06360 at 1561.035 kb on - strand, within CA265_RS06360 at 1561.044 kb on - strand, within CA265_RS06360 at 1561.050 kb on - strand, within CA265_RS06360 at 1561.050 kb on - strand, within CA265_RS06360 at 1561.064 kb on - strand, within CA265_RS06360 at 1561.074 kb on - strand, within CA265_RS06360 at 1561.078 kb on - strand, within CA265_RS06360 at 1561.089 kb on - strand, within CA265_RS06360 at 1561.099 kb on + strand, within CA265_RS06360 at 1561.099 kb on + strand, within CA265_RS06360 at 1561.119 kb on - strand, within CA265_RS06360 at 1561.176 kb on + strand, within CA265_RS06360 at 1561.188 kb on - strand, within CA265_RS06360 at 1561.190 kb on + strand, within CA265_RS06360 at 1561.199 kb on + strand, within CA265_RS06360 at 1561.224 kb on - strand, within CA265_RS06360 at 1561.274 kb on + strand, within CA265_RS06360 at 1561.396 kb on + strand at 1561.396 kb on + strand at 1561.432 kb on + strand at 1561.433 kb on - strand at 1561.465 kb on - strand at 1561.470 kb on - strand at 1561.477 kb on - strand at 1561.486 kb on - strand at 1561.663 kb on + strand, within CA265_RS06365 at 1561.666 kb on - strand, within CA265_RS06365 at 1561.666 kb on - strand, within CA265_RS06365 at 1561.712 kb on - strand, within CA265_RS06365 at 1561.713 kb on + strand, within CA265_RS06365 at 1561.713 kb on + strand, within CA265_RS06365 at 1561.713 kb on + strand, within CA265_RS06365 at 1561.713 kb on + strand, within CA265_RS06365 at 1561.764 kb on + strand, within CA265_RS06365 at 1561.807 kb on + strand, within CA265_RS06365 at 1561.845 kb on - strand, within CA265_RS06365 at 1561.886 kb on - strand, within CA265_RS06365 at 1561.896 kb on + strand, within CA265_RS06365 at 1561.896 kb on + strand, within CA265_RS06365 at 1561.897 kb on - strand, within CA265_RS06365 at 1561.975 kb on - strand, within CA265_RS06365 at 1562.011 kb on - strand, within CA265_RS06365 at 1562.040 kb on + strand, within CA265_RS06365 at 1562.040 kb on + strand, within CA265_RS06365 at 1562.126 kb on - strand, within CA265_RS06365 at 1562.143 kb on + strand, within CA265_RS06365 at 1562.196 kb on - strand, within CA265_RS06365 at 1562.196 kb on - strand, within CA265_RS06365 at 1562.199 kb on + strand, within CA265_RS06365 at 1562.200 kb on - strand, within CA265_RS06365 at 1562.215 kb on - strand, within CA265_RS06365 at 1562.253 kb on + strand, within CA265_RS06365 at 1562.254 kb on - strand, within CA265_RS06365 at 1562.269 kb on + strand, within CA265_RS06365 at 1562.272 kb on - strand, within CA265_RS06365 at 1562.297 kb on - strand, within CA265_RS06365 at 1562.304 kb on + strand, within CA265_RS06365 at 1562.312 kb on - strand, within CA265_RS06365 at 1562.317 kb on - strand, within CA265_RS06365 at 1562.341 kb on - strand, within CA265_RS06365 at 1562.406 kb on - strand, within CA265_RS06365 at 1562.420 kb on - strand, within CA265_RS06365 at 1562.437 kb on + strand, within CA265_RS06365 at 1562.437 kb on + strand, within CA265_RS06365 at 1562.458 kb on + strand at 1562.459 kb on - strand at 1562.480 kb on - strand at 1562.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 1,559,026 - CA265_RS06350 0.80 +1.3 1,559,093 + CA265_RS06350 0.88 +0.0 1,559,093 + CA265_RS06350 0.88 +0.4 1,559,094 - CA265_RS06350 0.88 -0.4 1,559,176 + -2.3 1,559,177 - -1.0 1,559,256 - CA265_RS06355 0.12 +0.2 1,559,256 - CA265_RS06355 0.12 +1.1 1,559,275 - CA265_RS06355 0.15 -3.4 1,559,275 - CA265_RS06355 0.15 -3.8 1,559,275 - CA265_RS06355 0.15 +2.3 1,559,305 + CA265_RS06355 0.19 -0.3 1,559,356 - CA265_RS06355 0.27 -0.4 1,559,359 + CA265_RS06355 0.28 +0.3 1,559,379 - CA265_RS06355 0.31 +0.5 1,559,419 - CA265_RS06355 0.37 -0.6 1,559,422 + CA265_RS06355 0.37 +0.2 1,559,423 - CA265_RS06355 0.37 +0.4 1,559,423 - CA265_RS06355 0.37 -0.9 1,559,423 - CA265_RS06355 0.37 +0.6 1,559,424 + CA265_RS06355 0.37 -1.3 1,559,458 + CA265_RS06355 0.43 +0.0 1,559,459 - CA265_RS06355 0.43 +0.7 1,559,492 + CA265_RS06355 0.48 +0.0 1,559,544 + CA265_RS06355 0.56 -0.3 1,559,545 - CA265_RS06355 0.56 -2.1 1,559,559 - CA265_RS06355 0.58 +0.5 1,559,559 - CA265_RS06355 0.58 -3.2 1,559,565 - CA265_RS06355 0.59 -0.2 1,559,737 + CA265_RS06355 0.85 +0.7 1,559,738 - CA265_RS06355 0.85 +0.0 1,559,824 - +0.6 1,559,865 + -0.2 1,559,866 - -1.1 1,559,872 - +0.6 1,559,913 - +0.7 1,559,937 + +0.9 1,559,956 - +0.4 1,559,960 + -0.1 1,559,961 - -0.0 1,559,982 + -0.8 1,560,020 + -0.1 1,560,021 - -1.7 1,560,041 + -1.1 1,560,041 + -0.4 1,560,041 + -2.8 1,560,042 - -0.9 1,560,086 - -2.8 1,560,116 + -1.5 1,560,116 + -2.7 1,560,116 + -0.2 1,560,117 - -3.5 1,560,120 + +0.1 1,560,121 - -2.0 1,560,148 + CA265_RS06360 0.11 +0.1 1,560,216 + CA265_RS06360 0.16 -0.6 1,560,275 + CA265_RS06360 0.20 -2.3 1,560,276 - CA265_RS06360 0.20 -1.9 1,560,278 - CA265_RS06360 0.20 -0.5 1,560,317 + CA265_RS06360 0.22 -2.4 1,560,319 - CA265_RS06360 0.23 -4.1 1,560,359 - CA265_RS06360 0.25 -0.9 1,560,363 + CA265_RS06360 0.25 -1.8 1,560,364 - CA265_RS06360 0.26 -4.3 1,560,368 - CA265_RS06360 0.26 -2.2 1,560,396 - CA265_RS06360 0.28 -1.2 1,560,402 + CA265_RS06360 0.28 -0.2 1,560,402 + CA265_RS06360 0.28 -1.3 1,560,403 - -0.1 1,560,405 + CA265_RS06360 0.28 -2.3 1,560,405 + CA265_RS06360 0.28 -0.7 1,560,440 + CA265_RS06360 0.31 -1.3 1,560,444 + CA265_RS06360 0.31 -3.6 1,560,445 - CA265_RS06360 0.31 +0.4 1,560,461 + CA265_RS06360 0.32 -4.1 1,560,461 + CA265_RS06360 0.32 -0.4 1,560,461 + CA265_RS06360 0.32 -3.0 1,560,466 + CA265_RS06360 0.32 -0.4 1,560,470 + CA265_RS06360 0.32 -2.9 1,560,545 + CA265_RS06360 0.37 -3.0 1,560,545 + CA265_RS06360 0.37 -1.4 1,560,545 + CA265_RS06360 0.37 -1.3 1,560,546 - CA265_RS06360 0.37 -3.1 1,560,594 + CA265_RS06360 0.41 +0.9 1,560,630 + CA265_RS06360 0.43 -0.1 1,560,680 + CA265_RS06360 0.46 -2.9 1,560,682 + CA265_RS06360 0.46 -1.6 1,560,700 + CA265_RS06360 0.48 -2.9 1,560,715 - CA265_RS06360 0.48 +0.2 1,560,715 - CA265_RS06360 0.48 -1.2 1,560,807 - CA265_RS06360 0.55 +1.0 1,560,809 - CA265_RS06360 0.55 -1.2 1,560,811 - CA265_RS06360 0.55 -1.4 1,560,907 + CA265_RS06360 0.61 -1.1 1,560,957 + CA265_RS06360 0.64 -0.4 1,561,020 + CA265_RS06360 0.68 -0.1 1,561,020 + CA265_RS06360 0.68 -2.5 1,561,021 - CA265_RS06360 0.68 -2.5 1,561,021 - CA265_RS06360 0.68 -2.0 1,561,021 - CA265_RS06360 0.68 -3.4 1,561,024 + CA265_RS06360 0.69 -2.1 1,561,024 + CA265_RS06360 0.69 -2.0 1,561,035 - CA265_RS06360 0.69 -2.2 1,561,044 - CA265_RS06360 0.70 -0.4 1,561,050 - CA265_RS06360 0.70 -0.7 1,561,050 - CA265_RS06360 0.70 -3.3 1,561,064 - CA265_RS06360 0.71 -3.9 1,561,074 - CA265_RS06360 0.72 -0.3 1,561,078 - CA265_RS06360 0.72 -0.7 1,561,089 - CA265_RS06360 0.73 -1.7 1,561,099 + CA265_RS06360 0.74 +0.4 1,561,099 + CA265_RS06360 0.74 -2.0 1,561,119 - CA265_RS06360 0.75 -2.2 1,561,176 + CA265_RS06360 0.79 -2.1 1,561,188 - CA265_RS06360 0.79 -1.6 1,561,190 + CA265_RS06360 0.80 -2.9 1,561,199 + CA265_RS06360 0.80 -3.4 1,561,224 - CA265_RS06360 0.82 -2.9 1,561,274 + CA265_RS06360 0.85 -2.4 1,561,396 + -2.9 1,561,396 + -1.1 1,561,432 + -0.9 1,561,433 - -1.8 1,561,465 - -1.8 1,561,470 - -0.6 1,561,477 - -2.1 1,561,486 - +0.1 1,561,663 + CA265_RS06365 0.14 -3.2 1,561,666 - CA265_RS06365 0.14 -0.7 1,561,666 - CA265_RS06365 0.14 +0.9 1,561,712 - CA265_RS06365 0.18 +0.6 1,561,713 + CA265_RS06365 0.19 -1.2 1,561,713 + CA265_RS06365 0.19 -1.8 1,561,713 + CA265_RS06365 0.19 -1.2 1,561,713 + CA265_RS06365 0.19 +1.5 1,561,764 + CA265_RS06365 0.24 -3.5 1,561,807 + CA265_RS06365 0.28 -3.0 1,561,845 - CA265_RS06365 0.31 -2.6 1,561,886 - CA265_RS06365 0.35 -1.0 1,561,896 + CA265_RS06365 0.36 -4.1 1,561,896 + CA265_RS06365 0.36 -2.0 1,561,897 - CA265_RS06365 0.37 -1.1 1,561,975 - CA265_RS06365 0.44 -3.2 1,562,011 - CA265_RS06365 0.48 -2.7 1,562,040 + CA265_RS06365 0.51 -0.0 1,562,040 + CA265_RS06365 0.51 -0.2 1,562,126 - CA265_RS06365 0.59 -1.0 1,562,143 + CA265_RS06365 0.61 +0.2 1,562,196 - CA265_RS06365 0.66 -0.6 1,562,196 - CA265_RS06365 0.66 -2.0 1,562,199 + CA265_RS06365 0.66 -3.2 1,562,200 - CA265_RS06365 0.66 -1.7 1,562,215 - CA265_RS06365 0.68 -1.3 1,562,253 + CA265_RS06365 0.71 -2.0 1,562,254 - CA265_RS06365 0.71 -0.1 1,562,269 + CA265_RS06365 0.73 -5.2 1,562,272 - CA265_RS06365 0.73 -0.1 1,562,297 - CA265_RS06365 0.76 -4.1 1,562,304 + CA265_RS06365 0.76 +0.0 1,562,312 - CA265_RS06365 0.77 -0.2 1,562,317 - CA265_RS06365 0.78 -3.3 1,562,341 - CA265_RS06365 0.80 -4.7 1,562,406 - CA265_RS06365 0.86 -0.3 1,562,420 - CA265_RS06365 0.88 -4.9 1,562,437 + CA265_RS06365 0.89 -2.4 1,562,437 + CA265_RS06365 0.89 -2.5 1,562,458 + -4.0 1,562,459 - -4.1 1,562,480 - -1.5 1,562,480 - -0.5
Or see this region's nucleotide sequence