Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05720

Experiment: R2A with copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with copper (II) chloride 0.16 mM
1,390,330	-		CA265_RS05715	0.76	-0.1
1,390,330	-		CA265_RS05715	0.76	+0.4
1,390,362	+		CA265_RS05715	0.79	+0.8
1,390,433	-		CA265_RS05715	0.84	-0.1
1,390,468	+		CA265_RS05715	0.87	+1.8
1,390,469	-		CA265_RS05715	0.87	-0.1
1,390,624	+				+1.0
1,390,630	-				+0.6
1,390,630	-				-0.4
1,390,632	+				+1.7
1,390,661	-				-0.2
1,390,734	+				+1.8
1,390,758	-				+1.6
1,390,793	+				+3.2
1,390,798	+				+2.2
1,390,810	+				+2.4
1,390,810	+				+1.8
1,390,876	+				+1.1
1,390,877	-				+0.4
1,390,882	-				-4.1
1,390,920	+				+1.7
1,390,928	+				+1.3
1,391,117	+				+1.6
1,391,301	+				+1.1
1,391,302	-				-3.9
1,391,341	+				-1.8
1,391,386	-				-1.1
1,391,428	-				-0.8
1,391,517	+		CA265_RS05720	0.11	-0.0
1,391,552	+		CA265_RS05720	0.13	+0.5
1,391,552	+		CA265_RS05720	0.13	+0.5
1,391,595	+		CA265_RS05720	0.15	+0.2
1,391,617	-		CA265_RS05720	0.16	-2.8
1,391,617	-		CA265_RS05720	0.16	-3.2
1,391,660	+		CA265_RS05720	0.18	-0.1
1,391,670	+		CA265_RS05720	0.19	+2.5
1,391,670	+		CA265_RS05720	0.19	+1.0
1,391,675	+		CA265_RS05720	0.19	+0.6
1,391,676	-		CA265_RS05720	0.19	-4.8
1,391,766	+		CA265_RS05720	0.24	+0.3
1,391,767	-		CA265_RS05720	0.24	-3.6
1,391,803	+		CA265_RS05720	0.26	-0.2
1,391,806	-		CA265_RS05720	0.26	-0.1
1,391,848	+		CA265_RS05720	0.28	+1.9
1,391,849	-		CA265_RS05720	0.28	-4.0
1,391,849	-		CA265_RS05720	0.28	-1.5
1,391,850	+		CA265_RS05720	0.28	+6.0
1,391,862	+		CA265_RS05720	0.29	+0.6
1,391,863	-		CA265_RS05720	0.29	-2.7
1,391,867	+		CA265_RS05720	0.29	+1.8
1,391,867	+		CA265_RS05720	0.29	+2.1
1,391,904	-		CA265_RS05720	0.31	-5.3
1,391,965	+		CA265_RS05720	0.34	+1.7
1,391,965	+		CA265_RS05720	0.34	+1.6
1,391,965	+		CA265_RS05720	0.34	+1.6
1,391,988	+		CA265_RS05720	0.35	+0.9
1,391,988	+		CA265_RS05720	0.35	-2.2
1,392,045	-		CA265_RS05720	0.38	-0.7
1,392,093	+		CA265_RS05720	0.41	+3.3
1,392,126	+		CA265_RS05720	0.42	+1.3
1,392,128	+		CA265_RS05720	0.43	+0.9
1,392,128	+		CA265_RS05720	0.43	+1.6
1,392,178	+		CA265_RS05720	0.45	+1.1
1,392,179	-		CA265_RS05720	0.45	-2.3
1,392,180	+		CA265_RS05720	0.45	+2.2
1,392,181	-		CA265_RS05720	0.45	-1.8
1,392,182	+		CA265_RS05720	0.45	+0.1
1,392,229	+		CA265_RS05720	0.48	+2.0
1,392,231	+		CA265_RS05720	0.48	-2.1
1,392,232	-		CA265_RS05720	0.48	-3.0
1,392,234	+		CA265_RS05720	0.48	+1.0
1,392,281	+		CA265_RS05720	0.50	+1.0
1,392,314	-		CA265_RS05720	0.52	-4.3
1,392,314	-		CA265_RS05720	0.52	-1.4
1,392,315	+		CA265_RS05720	0.52	+1.6
1,392,328	-		CA265_RS05720	0.53	-2.6
1,392,328	-		CA265_RS05720	0.53	-3.2
1,392,330	+		CA265_RS05720	0.53	+2.0
1,392,331	-		CA265_RS05720	0.53	-4.0
1,392,339	+		CA265_RS05720	0.53	+1.4
1,392,350	+		CA265_RS05720	0.54	-1.6
1,392,355	+		CA265_RS05720	0.54	+0.9
1,392,398	+		CA265_RS05720	0.57	+1.4
1,392,422	+		CA265_RS05720	0.58	+1.9
1,392,423	-		CA265_RS05720	0.58	-3.5
1,392,469	+		CA265_RS05720	0.60	+1.3
1,392,470	-		CA265_RS05720	0.60	-4.1
1,392,472	-		CA265_RS05720	0.60	-2.3
1,392,479	-		CA265_RS05720	0.61	-0.1
1,392,609	+		CA265_RS05720	0.67	+1.1
1,392,614	-		CA265_RS05720	0.68	-3.2
1,392,678	+		CA265_RS05720	0.71	+2.5
1,392,679	-		CA265_RS05720	0.71	-2.1
1,392,679	-		CA265_RS05720	0.71	-4.1
1,392,684	-		CA265_RS05720	0.71	-5.0
1,392,706	-		CA265_RS05720	0.72	-5.6
1,392,714	-		CA265_RS05720	0.73	-0.1
1,392,751	-		CA265_RS05720	0.75	-2.5
1,392,755	+		CA265_RS05720	0.75	+1.4
1,392,755	+		CA265_RS05720	0.75	+2.1
1,392,837	+		CA265_RS05720	0.79	+1.6
1,392,838	-		CA265_RS05720	0.79	-4.8
1,392,922	-		CA265_RS05720	0.84	-4.5
1,392,930	+		CA265_RS05720	0.84	+2.1
1,392,972	+		CA265_RS05720	0.86	+1.8
1,392,978	-		CA265_RS05720	0.87	-3.6
1,392,978	-		CA265_RS05720	0.87	-2.2
1,393,012	+		CA265_RS05720	0.88	+2.8
1,393,013	-		CA265_RS05720	0.88	-2.7
1,393,013	-		CA265_RS05720	0.88	-1.7
1,393,013	-		CA265_RS05720	0.88	-2.5
1,393,013	-		CA265_RS05720	0.88	-2.7
1,393,014	+		CA265_RS05720	0.88	+1.2
1,393,015	-		CA265_RS05720	0.88	-1.1
1,393,018	-		CA265_RS05720	0.89	-3.0
1,393,032	+				-0.8
1,393,061	+				+0.7
1,393,062	-				-2.8
1,393,154	+				+1.6
1,393,191	+				+3.0
1,393,207	-				-4.4
1,393,209	-				-2.8
1,393,240	+				-3.6
1,393,240	+				-4.6
1,393,241	-				-4.4
1,393,241	-				-4.7
1,393,317	+		CA265_RS05725	0.12	-2.4
1,393,374	+		CA265_RS05725	0.22	-4.0
1,393,378	+		CA265_RS05725	0.23	-2.0
1,393,379	-		CA265_RS05725	0.23	-4.2
1,393,406	-		CA265_RS05725	0.28	-4.1
1,393,406	-		CA265_RS05725	0.28	-4.6
1,393,473	+		CA265_RS05725	0.40	-3.0
1,393,529	-		CA265_RS05725	0.49	-2.8
1,393,540	-		CA265_RS05725	0.51	-2.6
1,393,543	-		CA265_RS05725	0.52	-5.0
1,393,557	-		CA265_RS05725	0.54	-3.6
1,393,594	-		CA265_RS05725	0.61	-4.1
1,393,594	-		CA265_RS05725	0.61	-2.9
1,393,596	+		CA265_RS05725	0.61	-2.2
1,393,597	-		CA265_RS05725	0.61	-5.3
1,393,705	-		CA265_RS05725	0.80	-4.2
1,393,823	+				-2.9
1,393,827	+				-2.2
1,393,885	+				+0.4
1,393,885	+				+0.1
1,393,886	-				-3.8
1,393,890	-				-1.3
1,393,905	-				-2.8
1,393,909	-				-3.6
1,393,910	+				+1.1
1,393,922	+				-1.4
1,393,923	-				-3.7
1,393,969	+		CA265_RS05730	0.13	-1.3
1,393,970	-		CA265_RS05730	0.13	-4.0
1,393,970	-		CA265_RS05730	0.13	-2.4
1,393,988	-		CA265_RS05730	0.18	-2.6
1,394,031	-		CA265_RS05730	0.30	-2.9
1,394,033	-		CA265_RS05730	0.31	-1.3
1,394,085	+		CA265_RS05730	0.46	+0.1
1,394,111	-		CA265_RS05730	0.53	-3.5
1,394,134	+		CA265_RS05730	0.60	-0.3
1,394,136	+		CA265_RS05730	0.60	+0.3
1,394,137	-		CA265_RS05730	0.60	-4.3
1,394,159	-		CA265_RS05730	0.67	-2.0
1,394,159	-		CA265_RS05730	0.67	-1.5