Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04085

Experiment: R2A with copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04080 and CA265_RS04085 are separated by 137 nucleotidesCA265_RS04085 and CA265_RS04090 are separated by 215 nucleotides CA265_RS04080: CA265_RS04080 - hypothetical protein, at 980,016 to 982,451 _RS04080 CA265_RS04085: CA265_RS04085 - phosphohydrolase, at 982,589 to 983,809 _RS04085 CA265_RS04090: CA265_RS04090 - transcriptional regulator, at 984,025 to 984,471 _RS04090 Position (kb) 982 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.617 kb on + strand, within CA265_RS04080at 981.645 kb on + strand, within CA265_RS04080at 981.646 kb on - strand, within CA265_RS04080at 981.751 kb on - strand, within CA265_RS04080at 981.771 kb on - strand, within CA265_RS04080at 981.852 kb on + strand, within CA265_RS04080at 981.883 kb on + strand, within CA265_RS04080at 981.883 kb on + strand, within CA265_RS04080at 981.888 kb on - strand, within CA265_RS04080at 981.898 kb on + strand, within CA265_RS04080at 981.984 kb on - strand, within CA265_RS04080at 981.984 kb on - strand, within CA265_RS04080at 981.985 kb on + strand, within CA265_RS04080at 981.985 kb on + strand, within CA265_RS04080at 981.986 kb on - strand, within CA265_RS04080at 981.986 kb on - strand, within CA265_RS04080at 982.051 kb on - strand, within CA265_RS04080at 982.093 kb on + strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.135 kb on - strand, within CA265_RS04080at 982.165 kb on + strand, within CA265_RS04080at 982.265 kb on - strandat 982.333 kb on - strandat 982.368 kb on + strandat 982.423 kb on - strandat 982.442 kb on + strandat 982.482 kb on + strandat 982.505 kb on + strandat 982.505 kb on + strandat 982.509 kb on + strandat 982.578 kb on + strandat 982.578 kb on + strandat 982.610 kb on + strandat 982.611 kb on - strandat 982.683 kb on + strandat 982.703 kb on - strandat 982.734 kb on - strand, within CA265_RS04085at 983.035 kb on - strand, within CA265_RS04085at 983.090 kb on - strand, within CA265_RS04085at 983.091 kb on + strand, within CA265_RS04085at 983.091 kb on + strand, within CA265_RS04085at 983.101 kb on - strand, within CA265_RS04085at 983.167 kb on - strand, within CA265_RS04085at 983.167 kb on - strand, within CA265_RS04085at 983.295 kb on - strand, within CA265_RS04085at 983.353 kb on - strand, within CA265_RS04085at 983.359 kb on + strand, within CA265_RS04085at 983.360 kb on - strand, within CA265_RS04085at 983.365 kb on + strand, within CA265_RS04085at 983.383 kb on - strand, within CA265_RS04085at 983.396 kb on - strand, within CA265_RS04085at 983.411 kb on + strand, within CA265_RS04085at 983.457 kb on + strand, within CA265_RS04085at 983.516 kb on + strand, within CA265_RS04085at 983.517 kb on - strand, within CA265_RS04085at 983.558 kb on + strand, within CA265_RS04085at 983.558 kb on + strand, within CA265_RS04085at 983.559 kb on - strand, within CA265_RS04085at 983.650 kb on - strand, within CA265_RS04085at 983.678 kb on - strand, within CA265_RS04085at 983.678 kb on - strand, within CA265_RS04085at 983.699 kb on - strandat 983.708 kb on - strandat 983.836 kb on - strandat 983.866 kb on - strandat 983.866 kb on - strandat 983.870 kb on + strandat 983.919 kb on - strandat 983.936 kb on + strandat 983.947 kb on - strandat 983.947 kb on - strandat 983.985 kb on + strandat 983.993 kb on - strandat 984.088 kb on - strand, within CA265_RS04090at 984.388 kb on - strand, within CA265_RS04090at 984.460 kb on - strandat 984.524 kb on + strandat 984.529 kb on + strandat 984.561 kb on - strandat 984.624 kb on + strandat 984.678 kb on - strandat 984.709 kb on - strandat 984.762 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
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981,617 + CA265_RS04080 0.66 -1.3
981,645 + CA265_RS04080 0.67 -0.6
981,646 - CA265_RS04080 0.67 -3.7
981,751 - CA265_RS04080 0.71 -1.5
981,771 - CA265_RS04080 0.72 +0.6
981,852 + CA265_RS04080 0.75 -3.0
981,883 + CA265_RS04080 0.77 -2.5
981,883 + CA265_RS04080 0.77 +1.5
981,888 - CA265_RS04080 0.77 +0.4
981,898 + CA265_RS04080 0.77 -0.1
981,984 - CA265_RS04080 0.81 -0.2
981,984 - CA265_RS04080 0.81 +0.2
981,985 + CA265_RS04080 0.81 -0.9
981,985 + CA265_RS04080 0.81 -1.0
981,986 - CA265_RS04080 0.81 -3.3
981,986 - CA265_RS04080 0.81 -3.0
982,051 - CA265_RS04080 0.84 -3.4
982,093 + CA265_RS04080 0.85 -3.0
982,103 - CA265_RS04080 0.86 +0.4
982,103 - CA265_RS04080 0.86 +0.1
982,103 - CA265_RS04080 0.86 +0.2
982,103 - CA265_RS04080 0.86 +1.6
982,135 - CA265_RS04080 0.87 -0.1
982,165 + CA265_RS04080 0.88 -1.6
982,265 - -2.1
982,333 - +0.6
982,368 + +0.1
982,423 - -0.0
982,442 + -1.8
982,482 + -1.4
982,505 + +0.8
982,505 + -2.3
982,509 + -0.0
982,578 + +0.1
982,578 + +1.0
982,610 + -0.4
982,611 - -3.5
982,683 + +0.8
982,703 - -1.4
982,734 - CA265_RS04085 0.12 -1.4
983,035 - CA265_RS04085 0.37 +0.7
983,090 - CA265_RS04085 0.41 -0.5
983,091 + CA265_RS04085 0.41 -0.3
983,091 + CA265_RS04085 0.41 +0.3
983,101 - CA265_RS04085 0.42 -0.2
983,167 - CA265_RS04085 0.47 -1.1
983,167 - CA265_RS04085 0.47 -0.5
983,295 - CA265_RS04085 0.58 -1.0
983,353 - CA265_RS04085 0.63 -1.2
983,359 + CA265_RS04085 0.63 +0.9
983,360 - CA265_RS04085 0.63 +1.0
983,365 + CA265_RS04085 0.64 -1.4
983,383 - CA265_RS04085 0.65 +0.1
983,396 - CA265_RS04085 0.66 +0.6
983,411 + CA265_RS04085 0.67 -1.1
983,457 + CA265_RS04085 0.71 +0.3
983,516 + CA265_RS04085 0.76 +1.0
983,517 - CA265_RS04085 0.76 +1.1
983,558 + CA265_RS04085 0.79 -0.4
983,558 + CA265_RS04085 0.79 -0.5
983,559 - CA265_RS04085 0.79 -0.2
983,650 - CA265_RS04085 0.87 +0.3
983,678 - CA265_RS04085 0.89 -1.3
983,678 - CA265_RS04085 0.89 -3.6
983,699 - -0.7
983,708 - +0.8
983,836 - +0.1
983,866 - -0.1
983,866 - +1.9
983,870 + -1.6
983,919 - -1.0
983,936 + -3.0
983,947 - -2.3
983,947 - -0.3
983,985 + -0.6
983,993 - -0.1
984,088 - CA265_RS04090 0.14 -2.2
984,388 - CA265_RS04090 0.81 -1.8
984,460 - -1.3
984,524 + -0.6
984,529 + +0.4
984,561 - -0.0
984,624 + -1.5
984,678 - -1.0
984,709 - -0.4
984,762 + +0.6

Or see this region's nucleotide sequence