Experiment: R2A with copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02050 and CA265_RS02055 are separated by 138 nucleotides CA265_RS02055 and CA265_RS02060 are separated by 30 nucleotides
CA265_RS02050: CA265_RS02050 - 4-hydroxy-tetrahydrodipicolinate synthase, at 518,251 to 519,138
_RS02050
CA265_RS02055: CA265_RS02055 - DNA ligase (NAD(+)) LigA, at 519,277 to 521,292
_RS02055
CA265_RS02060: CA265_RS02060 - hypothetical protein, at 521,323 to 522,825
_RS02060
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 519.142 kb on - strand at 519.209 kb on + strand at 519.209 kb on + strand at 519.214 kb on - strand at 519.217 kb on + strand at 519.217 kb on + strand at 519.218 kb on - strand at 519.261 kb on + strand at 519.269 kb on - strand at 521.302 kb on - strand at 521.304 kb on - strand at 521.395 kb on - strand at 521.398 kb on - strand at 521.442 kb on - strand at 521.517 kb on - strand, within CA265_RS02060 at 521.517 kb on - strand, within CA265_RS02060 at 521.518 kb on + strand, within CA265_RS02060 at 521.518 kb on + strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.519 kb on - strand, within CA265_RS02060 at 521.535 kb on + strand, within CA265_RS02060 at 521.619 kb on + strand, within CA265_RS02060 at 521.619 kb on + strand, within CA265_RS02060 at 521.620 kb on - strand, within CA265_RS02060 at 521.620 kb on - strand at 521.620 kb on - strand, within CA265_RS02060 at 521.620 kb on - strand, within CA265_RS02060 at 521.626 kb on - strand, within CA265_RS02060 at 521.652 kb on - strand, within CA265_RS02060 at 521.676 kb on - strand, within CA265_RS02060 at 521.709 kb on + strand, within CA265_RS02060 at 521.709 kb on + strand at 521.710 kb on - strand, within CA265_RS02060 at 521.748 kb on + strand, within CA265_RS02060 at 521.791 kb on - strand, within CA265_RS02060 at 521.798 kb on + strand, within CA265_RS02060 at 521.798 kb on + strand, within CA265_RS02060 at 521.799 kb on - strand, within CA265_RS02060 at 521.799 kb on - strand, within CA265_RS02060 at 521.799 kb on - strand, within CA265_RS02060 at 521.802 kb on + strand, within CA265_RS02060 at 521.806 kb on - strand, within CA265_RS02060 at 521.868 kb on + strand, within CA265_RS02060 at 521.871 kb on + strand, within CA265_RS02060 at 521.899 kb on - strand, within CA265_RS02060 at 521.904 kb on + strand, within CA265_RS02060 at 521.905 kb on - strand, within CA265_RS02060 at 521.907 kb on - strand, within CA265_RS02060 at 521.974 kb on + strand, within CA265_RS02060 at 522.006 kb on + strand, within CA265_RS02060 at 522.147 kb on + strand, within CA265_RS02060 at 522.231 kb on + strand, within CA265_RS02060 at 522.232 kb on - strand, within CA265_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM remove 519,142 - -1.7 519,209 + -1.2 519,209 + +0.3 519,214 - -1.9 519,217 + -3.8 519,217 + -0.0 519,218 - -2.2 519,261 + +1.1 519,269 - -0.3 521,302 - -0.4 521,304 - +0.9 521,395 - -1.8 521,398 - +0.0 521,442 - -0.3 521,517 - CA265_RS02060 0.13 +1.8 521,517 - CA265_RS02060 0.13 -0.7 521,518 + CA265_RS02060 0.13 -0.3 521,518 + CA265_RS02060 0.13 +0.6 521,519 - CA265_RS02060 0.13 +1.7 521,519 - CA265_RS02060 0.13 +0.0 521,519 - CA265_RS02060 0.13 -1.1 521,519 - CA265_RS02060 0.13 +0.9 521,519 - CA265_RS02060 0.13 +0.6 521,535 + CA265_RS02060 0.14 +1.4 521,619 + CA265_RS02060 0.20 +0.4 521,619 + CA265_RS02060 0.20 -0.5 521,620 - CA265_RS02060 0.20 -1.6 521,620 - +1.7 521,620 - CA265_RS02060 0.20 -0.4 521,620 - CA265_RS02060 0.20 +1.0 521,626 - CA265_RS02060 0.20 +4.9 521,652 - CA265_RS02060 0.22 +0.3 521,676 - CA265_RS02060 0.23 -2.5 521,709 + CA265_RS02060 0.26 +0.9 521,709 + +3.1 521,710 - CA265_RS02060 0.26 +0.6 521,748 + CA265_RS02060 0.28 +0.6 521,791 - CA265_RS02060 0.31 -2.6 521,798 + CA265_RS02060 0.32 -0.6 521,798 + CA265_RS02060 0.32 +0.4 521,799 - CA265_RS02060 0.32 +1.0 521,799 - CA265_RS02060 0.32 -2.0 521,799 - CA265_RS02060 0.32 +0.8 521,802 + CA265_RS02060 0.32 -0.6 521,806 - CA265_RS02060 0.32 -3.6 521,868 + CA265_RS02060 0.36 +0.7 521,871 + CA265_RS02060 0.36 -0.6 521,899 - CA265_RS02060 0.38 +0.5 521,904 + CA265_RS02060 0.39 -1.4 521,905 - CA265_RS02060 0.39 +0.7 521,907 - CA265_RS02060 0.39 +1.0 521,974 + CA265_RS02060 0.43 -0.5 522,006 + CA265_RS02060 0.45 +1.7 522,147 + CA265_RS02060 0.55 +0.8 522,231 + CA265_RS02060 0.60 +1.7 522,232 - CA265_RS02060 0.60 -0.5
Or see this region's nucleotide sequence