Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01935

Experiment: R2A with copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS01930 and CA265_RS01935 are separated by 438 nucleotidesCA265_RS01935 and CA265_RS01940 are separated by 25 nucleotides CA265_RS01930: CA265_RS01930 - hypothetical protein, at 486,739 to 488,310 _RS01930 CA265_RS01935: CA265_RS01935 - hypothetical protein, at 488,749 to 491,874 _RS01935 CA265_RS01940: CA265_RS01940 - hypothetical protein, at 491,900 to 493,762 _RS01940 Position (kb) 488 489 490 491 492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 487.761 kb on + strand, within CA265_RS01930at 487.808 kb on - strand, within CA265_RS01930at 487.846 kb on + strand, within CA265_RS01930at 487.860 kb on - strand, within CA265_RS01930at 487.860 kb on - strand, within CA265_RS01930at 487.860 kb on - strand, within CA265_RS01930at 487.909 kb on - strand, within CA265_RS01930at 487.915 kb on - strand, within CA265_RS01930at 487.931 kb on - strand, within CA265_RS01930at 487.958 kb on + strand, within CA265_RS01930at 487.959 kb on - strand, within CA265_RS01930at 487.966 kb on - strand, within CA265_RS01930at 487.971 kb on - strand, within CA265_RS01930at 488.004 kb on + strand, within CA265_RS01930at 488.031 kb on + strand, within CA265_RS01930at 488.077 kb on - strand, within CA265_RS01930at 488.080 kb on + strand, within CA265_RS01930at 488.158 kb on + strandat 488.159 kb on - strandat 488.159 kb on - strandat 488.224 kb on - strandat 488.296 kb on - strandat 488.496 kb on - strandat 488.549 kb on + strandat 488.549 kb on + strandat 488.613 kb on + strandat 488.613 kb on + strandat 488.613 kb on + strandat 488.626 kb on + strandat 488.646 kb on + strandat 488.646 kb on + strandat 488.647 kb on - strandat 488.662 kb on - strandat 488.666 kb on + strandat 488.670 kb on - strandat 488.759 kb on + strandat 488.812 kb on + strandat 488.852 kb on + strandat 488.852 kb on + strandat 488.853 kb on - strandat 488.976 kb on - strandat 488.996 kb on - strandat 489.029 kb on + strandat 489.133 kb on - strand, within CA265_RS01935at 489.166 kb on - strand, within CA265_RS01935at 489.178 kb on - strand, within CA265_RS01935at 489.192 kb on + strand, within CA265_RS01935at 489.206 kb on + strand, within CA265_RS01935at 489.206 kb on + strand, within CA265_RS01935at 489.207 kb on - strand, within CA265_RS01935at 489.207 kb on - strand, within CA265_RS01935at 489.208 kb on + strand, within CA265_RS01935at 489.209 kb on - strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.300 kb on - strand, within CA265_RS01935at 489.403 kb on + strand, within CA265_RS01935at 489.591 kb on + strand, within CA265_RS01935at 489.591 kb on + strand, within CA265_RS01935at 489.619 kb on + strand, within CA265_RS01935at 489.683 kb on - strand, within CA265_RS01935at 489.702 kb on + strand, within CA265_RS01935at 489.703 kb on - strand, within CA265_RS01935at 489.703 kb on - strand, within CA265_RS01935at 489.703 kb on - strand, within CA265_RS01935at 489.714 kb on - strand, within CA265_RS01935at 489.764 kb on - strand, within CA265_RS01935at 489.825 kb on + strand, within CA265_RS01935at 489.882 kb on + strand, within CA265_RS01935at 489.885 kb on + strand, within CA265_RS01935at 489.921 kb on + strand, within CA265_RS01935at 489.921 kb on + strand, within CA265_RS01935at 489.952 kb on + strand, within CA265_RS01935at 489.952 kb on + strand, within CA265_RS01935at 489.953 kb on - strand, within CA265_RS01935at 489.955 kb on - strand, within CA265_RS01935at 489.955 kb on - strand, within CA265_RS01935at 489.988 kb on + strand, within CA265_RS01935at 489.989 kb on - strand, within CA265_RS01935at 490.045 kb on - strand, within CA265_RS01935at 490.083 kb on - strand, within CA265_RS01935at 490.087 kb on + strand, within CA265_RS01935at 490.112 kb on + strand, within CA265_RS01935at 490.120 kb on - strand, within CA265_RS01935at 490.129 kb on + strand, within CA265_RS01935at 490.132 kb on - strand, within CA265_RS01935at 490.134 kb on - strand, within CA265_RS01935at 490.134 kb on - strand, within CA265_RS01935at 490.183 kb on + strand, within CA265_RS01935at 490.184 kb on - strand, within CA265_RS01935at 490.187 kb on - strand, within CA265_RS01935at 490.223 kb on + strand, within CA265_RS01935at 490.224 kb on - strand, within CA265_RS01935at 490.227 kb on + strand, within CA265_RS01935at 490.266 kb on + strand, within CA265_RS01935at 490.316 kb on + strand, within CA265_RS01935at 490.366 kb on + strand, within CA265_RS01935at 490.367 kb on - strand, within CA265_RS01935at 490.426 kb on + strand, within CA265_RS01935at 490.507 kb on + strand, within CA265_RS01935at 490.508 kb on - strand, within CA265_RS01935at 490.508 kb on - strand, within CA265_RS01935at 490.508 kb on - strand, within CA265_RS01935at 490.521 kb on - strand, within CA265_RS01935at 490.572 kb on + strand, within CA265_RS01935at 490.572 kb on + strand, within CA265_RS01935at 490.572 kb on + strand, within CA265_RS01935at 490.576 kb on + strand, within CA265_RS01935at 490.576 kb on + strand, within CA265_RS01935at 490.577 kb on - strand, within CA265_RS01935at 490.577 kb on - strand, within CA265_RS01935at 490.578 kb on + strand, within CA265_RS01935at 490.693 kb on - strand, within CA265_RS01935at 490.774 kb on + strand, within CA265_RS01935at 490.775 kb on - strand, within CA265_RS01935at 490.831 kb on - strand, within CA265_RS01935at 490.831 kb on - strand, within CA265_RS01935at 490.853 kb on + strand, within CA265_RS01935at 490.873 kb on - strand, within CA265_RS01935at 490.902 kb on - strand, within CA265_RS01935at 490.923 kb on - strand, within CA265_RS01935at 490.966 kb on + strand, within CA265_RS01935at 490.967 kb on - strand, within CA265_RS01935at 490.967 kb on - strand, within CA265_RS01935at 491.053 kb on - strand, within CA265_RS01935at 491.078 kb on - strand, within CA265_RS01935at 491.111 kb on + strand, within CA265_RS01935at 491.111 kb on + strand, within CA265_RS01935at 491.111 kb on + strand, within CA265_RS01935at 491.112 kb on - strand, within CA265_RS01935at 491.112 kb on - strand, within CA265_RS01935at 491.112 kb on - strand, within CA265_RS01935at 491.129 kb on - strand, within CA265_RS01935at 491.129 kb on - strand, within CA265_RS01935at 491.144 kb on - strand, within CA265_RS01935at 491.170 kb on + strand, within CA265_RS01935at 491.184 kb on + strand, within CA265_RS01935at 491.187 kb on - strand, within CA265_RS01935at 491.212 kb on - strand, within CA265_RS01935at 491.212 kb on - strand, within CA265_RS01935at 491.293 kb on - strand, within CA265_RS01935at 491.332 kb on + strand, within CA265_RS01935at 491.344 kb on - strand, within CA265_RS01935at 491.385 kb on - strand, within CA265_RS01935at 491.385 kb on - strand, within CA265_RS01935at 491.397 kb on + strand, within CA265_RS01935at 491.397 kb on + strand, within CA265_RS01935at 491.596 kb on + strandat 491.597 kb on - strandat 491.616 kb on - strandat 491.626 kb on - strandat 491.698 kb on - strandat 491.715 kb on - strandat 491.747 kb on - strandat 491.858 kb on + strandat 491.880 kb on - strandat 491.886 kb on - strandat 491.911 kb on - strandat 491.935 kb on + strandat 491.947 kb on + strandat 491.948 kb on - strandat 492.003 kb on + strandat 492.019 kb on - strandat 492.060 kb on + strandat 492.171 kb on + strand, within CA265_RS01940at 492.199 kb on + strand, within CA265_RS01940at 492.321 kb on - strand, within CA265_RS01940at 492.321 kb on - strand, within CA265_RS01940at 492.364 kb on - strand, within CA265_RS01940at 492.387 kb on + strand, within CA265_RS01940at 492.388 kb on - strand, within CA265_RS01940at 492.403 kb on - strand, within CA265_RS01940at 492.439 kb on + strand, within CA265_RS01940at 492.441 kb on + strand, within CA265_RS01940at 492.509 kb on - strand, within CA265_RS01940at 492.555 kb on - strand, within CA265_RS01940at 492.555 kb on - strand, within CA265_RS01940at 492.568 kb on - strand, within CA265_RS01940at 492.611 kb on - strand, within CA265_RS01940at 492.630 kb on + strandat 492.706 kb on + strand, within CA265_RS01940at 492.707 kb on - strand, within CA265_RS01940at 492.709 kb on + strand, within CA265_RS01940at 492.710 kb on - strand, within CA265_RS01940at 492.725 kb on + strand, within CA265_RS01940at 492.740 kb on + strand, within CA265_RS01940at 492.741 kb on - strand, within CA265_RS01940at 492.787 kb on + strand, within CA265_RS01940at 492.811 kb on - strand, within CA265_RS01940at 492.874 kb on - strand, within CA265_RS01940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
remove
487,761 + CA265_RS01930 0.65 -3.5
487,808 - CA265_RS01930 0.68 -0.9
487,846 + CA265_RS01930 0.70 -1.0
487,860 - CA265_RS01930 0.71 +0.3
487,860 - CA265_RS01930 0.71 -2.2
487,860 - CA265_RS01930 0.71 -0.0
487,909 - CA265_RS01930 0.74 -3.1
487,915 - CA265_RS01930 0.75 -1.0
487,931 - CA265_RS01930 0.76 +0.1
487,958 + CA265_RS01930 0.78 -0.4
487,959 - CA265_RS01930 0.78 +0.2
487,966 - CA265_RS01930 0.78 -2.4
487,971 - CA265_RS01930 0.78 -1.9
488,004 + CA265_RS01930 0.80 -1.4
488,031 + CA265_RS01930 0.82 -2.8
488,077 - CA265_RS01930 0.85 -1.6
488,080 + CA265_RS01930 0.85 -2.1
488,158 + -2.9
488,159 - +0.2
488,159 - -1.6
488,224 - -2.0
488,296 - +0.9
488,496 - -0.5
488,549 + -0.3
488,549 + -0.9
488,613 + +0.6
488,613 + -0.6
488,613 + -2.3
488,626 + -0.7
488,646 + -2.1
488,646 + +1.1
488,647 - -0.3
488,662 - +0.2
488,666 + -2.9
488,670 - +1.2
488,759 + -0.8
488,812 + +0.3
488,852 + -2.1
488,852 + -2.9
488,853 - -0.6
488,976 - +2.0
488,996 - +0.0
489,029 + +2.9
489,133 - CA265_RS01935 0.12 -0.7
489,166 - CA265_RS01935 0.13 +0.4
489,178 - CA265_RS01935 0.14 +1.3
489,192 + CA265_RS01935 0.14 +1.1
489,206 + CA265_RS01935 0.15 -0.8
489,206 + CA265_RS01935 0.15 -0.8
489,207 - CA265_RS01935 0.15 -0.1
489,207 - CA265_RS01935 0.15 -2.7
489,208 + CA265_RS01935 0.15 +0.9
489,209 - CA265_RS01935 0.15 +0.1
489,299 + CA265_RS01935 0.18 +0.5
489,299 + CA265_RS01935 0.18 -4.1
489,299 + CA265_RS01935 0.18 +0.1
489,299 + CA265_RS01935 0.18 +1.3
489,300 - CA265_RS01935 0.18 -2.4
489,403 + CA265_RS01935 0.21 -0.3
489,591 + CA265_RS01935 0.27 +0.3
489,591 + CA265_RS01935 0.27 -2.2
489,619 + CA265_RS01935 0.28 +1.3
489,683 - CA265_RS01935 0.30 +0.6
489,702 + CA265_RS01935 0.30 -0.0
489,703 - CA265_RS01935 0.31 +0.3
489,703 - CA265_RS01935 0.31 +1.0
489,703 - CA265_RS01935 0.31 -0.8
489,714 - CA265_RS01935 0.31 -2.8
489,764 - CA265_RS01935 0.32 -0.5
489,825 + CA265_RS01935 0.34 +0.1
489,882 + CA265_RS01935 0.36 +0.5
489,885 + CA265_RS01935 0.36 +1.4
489,921 + CA265_RS01935 0.37 +0.2
489,921 + CA265_RS01935 0.37 -1.2
489,952 + CA265_RS01935 0.38 +0.5
489,952 + CA265_RS01935 0.38 +1.2
489,953 - CA265_RS01935 0.39 +1.0
489,955 - CA265_RS01935 0.39 -2.4
489,955 - CA265_RS01935 0.39 -0.7
489,988 + CA265_RS01935 0.40 -0.3
489,989 - CA265_RS01935 0.40 -0.3
490,045 - CA265_RS01935 0.41 -1.3
490,083 - CA265_RS01935 0.43 +1.4
490,087 + CA265_RS01935 0.43 +2.5
490,112 + CA265_RS01935 0.44 -0.7
490,120 - CA265_RS01935 0.44 +1.0
490,129 + CA265_RS01935 0.44 +0.3
490,132 - CA265_RS01935 0.44 +1.2
490,134 - CA265_RS01935 0.44 +2.4
490,134 - CA265_RS01935 0.44 -0.3
490,183 + CA265_RS01935 0.46 -0.9
490,184 - CA265_RS01935 0.46 -1.2
490,187 - CA265_RS01935 0.46 +0.3
490,223 + CA265_RS01935 0.47 -2.3
490,224 - CA265_RS01935 0.47 -2.4
490,227 + CA265_RS01935 0.47 +1.9
490,266 + CA265_RS01935 0.49 -1.6
490,316 + CA265_RS01935 0.50 -2.0
490,366 + CA265_RS01935 0.52 -0.3
490,367 - CA265_RS01935 0.52 -0.3
490,426 + CA265_RS01935 0.54 -0.7
490,507 + CA265_RS01935 0.56 -0.6
490,508 - CA265_RS01935 0.56 -1.9
490,508 - CA265_RS01935 0.56 +0.8
490,508 - CA265_RS01935 0.56 -3.2
490,521 - CA265_RS01935 0.57 -0.4
490,572 + CA265_RS01935 0.58 +0.8
490,572 + CA265_RS01935 0.58 +0.2
490,572 + CA265_RS01935 0.58 +1.1
490,576 + CA265_RS01935 0.58 -2.6
490,576 + CA265_RS01935 0.58 +0.1
490,577 - CA265_RS01935 0.58 -1.3
490,577 - CA265_RS01935 0.58 -0.1
490,578 + CA265_RS01935 0.59 -2.6
490,693 - CA265_RS01935 0.62 +0.5
490,774 + CA265_RS01935 0.65 +0.7
490,775 - CA265_RS01935 0.65 +0.6
490,831 - CA265_RS01935 0.67 +0.7
490,831 - CA265_RS01935 0.67 -1.7
490,853 + CA265_RS01935 0.67 +2.0
490,873 - CA265_RS01935 0.68 -1.8
490,902 - CA265_RS01935 0.69 -0.2
490,923 - CA265_RS01935 0.70 +1.7
490,966 + CA265_RS01935 0.71 -1.3
490,967 - CA265_RS01935 0.71 +0.5
490,967 - CA265_RS01935 0.71 +0.4
491,053 - CA265_RS01935 0.74 +0.4
491,078 - CA265_RS01935 0.75 -0.4
491,111 + CA265_RS01935 0.76 +0.4
491,111 + CA265_RS01935 0.76 -1.2
491,111 + CA265_RS01935 0.76 +0.5
491,112 - CA265_RS01935 0.76 +0.3
491,112 - CA265_RS01935 0.76 +2.3
491,112 - CA265_RS01935 0.76 +0.1
491,129 - CA265_RS01935 0.76 +0.7
491,129 - CA265_RS01935 0.76 +1.0
491,144 - CA265_RS01935 0.77 -3.6
491,170 + CA265_RS01935 0.77 -0.7
491,184 + CA265_RS01935 0.78 -0.3
491,187 - CA265_RS01935 0.78 +0.9
491,212 - CA265_RS01935 0.79 -1.6
491,212 - CA265_RS01935 0.79 -0.9
491,293 - CA265_RS01935 0.81 +2.5
491,332 + CA265_RS01935 0.83 -0.1
491,344 - CA265_RS01935 0.83 +1.9
491,385 - CA265_RS01935 0.84 +1.2
491,385 - CA265_RS01935 0.84 -0.0
491,397 + CA265_RS01935 0.85 -3.1
491,397 + CA265_RS01935 0.85 -2.3
491,596 + +0.5
491,597 - +0.6
491,616 - +0.1
491,626 - +0.4
491,698 - -0.8
491,715 - +1.0
491,747 - +0.9
491,858 + -1.4
491,880 - +0.4
491,886 - +0.9
491,911 - +0.2
491,935 + -0.1
491,947 + -1.0
491,948 - +0.5
492,003 + +0.1
492,019 - +0.0
492,060 + -1.1
492,171 + CA265_RS01940 0.15 -1.3
492,199 + CA265_RS01940 0.16 -3.0
492,321 - CA265_RS01940 0.23 +1.4
492,321 - CA265_RS01940 0.23 +0.7
492,364 - CA265_RS01940 0.25 -2.3
492,387 + CA265_RS01940 0.26 +1.1
492,388 - CA265_RS01940 0.26 +0.7
492,403 - CA265_RS01940 0.27 -1.6
492,439 + CA265_RS01940 0.29 -2.4
492,441 + CA265_RS01940 0.29 -0.7
492,509 - CA265_RS01940 0.33 +0.1
492,555 - CA265_RS01940 0.35 +1.0
492,555 - CA265_RS01940 0.35 -0.8
492,568 - CA265_RS01940 0.36 -1.8
492,611 - CA265_RS01940 0.38 +2.0
492,630 + -0.3
492,706 + CA265_RS01940 0.43 +0.4
492,707 - CA265_RS01940 0.43 +0.7
492,709 + CA265_RS01940 0.43 +2.6
492,710 - CA265_RS01940 0.43 +0.6
492,725 + CA265_RS01940 0.44 +0.2
492,740 + CA265_RS01940 0.45 -0.1
492,741 - CA265_RS01940 0.45 +0.3
492,787 + CA265_RS01940 0.48 +0.6
492,811 - CA265_RS01940 0.49 +1.4
492,874 - CA265_RS01940 0.52 +0.5

Or see this region's nucleotide sequence