Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01620

Experiment: R2A with copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01610 and CA265_RS01615 are separated by 101 nucleotidesCA265_RS01615 and CA265_RS01620 are separated by 201 nucleotidesCA265_RS01620 and CA265_RS01625 are separated by 10 nucleotidesCA265_RS01625 and CA265_RS01630 are separated by 21 nucleotides CA265_RS01610: CA265_RS01610 - dipeptidase E, at 416,670 to 417,365 _RS01610 CA265_RS01615: CA265_RS01615 - hypothetical protein, at 417,467 to 417,862 _RS01615 CA265_RS01620: CA265_RS01620 - colanic acid biosynthesis acetyltransferase WcaF, at 418,064 to 418,615 _RS01620 CA265_RS01625: CA265_RS01625 - hypothetical protein, at 418,626 to 419,222 _RS01625 CA265_RS01630: CA265_RS01630 - glycosyl transferase family 2, at 419,244 to 420,098 _RS01630 Position (kb) 418 419Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 417.095 kb on + strand, within CA265_RS01610at 417.099 kb on - strand, within CA265_RS01610at 417.099 kb on - strand, within CA265_RS01610at 417.144 kb on - strand, within CA265_RS01610at 417.294 kb on - strand, within CA265_RS01610at 417.310 kb on + strandat 417.311 kb on - strandat 417.320 kb on - strandat 417.412 kb on + strandat 417.434 kb on + strandat 417.435 kb on - strandat 417.469 kb on - strandat 417.469 kb on - strandat 417.522 kb on - strand, within CA265_RS01615at 417.522 kb on - strand, within CA265_RS01615at 417.587 kb on + strand, within CA265_RS01615at 417.588 kb on - strand, within CA265_RS01615at 417.619 kb on + strandat 417.653 kb on + strand, within CA265_RS01615at 417.653 kb on + strand, within CA265_RS01615at 417.654 kb on - strand, within CA265_RS01615at 417.668 kb on - strand, within CA265_RS01615at 417.668 kb on - strand, within CA265_RS01615at 417.752 kb on - strand, within CA265_RS01615at 417.779 kb on - strand, within CA265_RS01615at 417.781 kb on - strand, within CA265_RS01615at 417.825 kb on - strandat 417.853 kb on + strandat 417.962 kb on + strandat 417.975 kb on - strandat 417.987 kb on - strandat 418.054 kb on + strandat 418.060 kb on - strandat 418.114 kb on + strandat 418.115 kb on - strandat 418.115 kb on - strandat 418.211 kb on + strand, within CA265_RS01620at 418.212 kb on - strand, within CA265_RS01620at 418.237 kb on + strand, within CA265_RS01620at 418.271 kb on - strand, within CA265_RS01620at 418.272 kb on + strand, within CA265_RS01620at 418.273 kb on - strand, within CA265_RS01620at 418.357 kb on - strand, within CA265_RS01620at 418.378 kb on - strand, within CA265_RS01620at 418.404 kb on + strand, within CA265_RS01620at 418.405 kb on - strand, within CA265_RS01620at 418.466 kb on + strand, within CA265_RS01620at 418.599 kb on - strandat 418.660 kb on - strandat 418.687 kb on + strand, within CA265_RS01625at 418.711 kb on + strand, within CA265_RS01625at 418.718 kb on + strand, within CA265_RS01625at 418.741 kb on + strand, within CA265_RS01625at 418.780 kb on - strand, within CA265_RS01625at 418.782 kb on + strand, within CA265_RS01625at 418.819 kb on + strand, within CA265_RS01625at 418.930 kb on + strand, within CA265_RS01625at 418.965 kb on + strand, within CA265_RS01625at 418.965 kb on + strand, within CA265_RS01625at 418.965 kb on + strand, within CA265_RS01625at 418.965 kb on + strand, within CA265_RS01625at 418.981 kb on + strand, within CA265_RS01625at 418.982 kb on - strand, within CA265_RS01625at 419.010 kb on - strand, within CA265_RS01625at 419.029 kb on - strand, within CA265_RS01625at 419.029 kb on - strand, within CA265_RS01625at 419.031 kb on + strand, within CA265_RS01625at 419.031 kb on + strand, within CA265_RS01625at 419.031 kb on + strand, within CA265_RS01625at 419.054 kb on + strand, within CA265_RS01625at 419.077 kb on + strand, within CA265_RS01625at 419.077 kb on + strand, within CA265_RS01625at 419.077 kb on + strand, within CA265_RS01625at 419.110 kb on - strand, within CA265_RS01625at 419.110 kb on - strand, within CA265_RS01625at 419.114 kb on + strand, within CA265_RS01625at 419.115 kb on - strand, within CA265_RS01625at 419.121 kb on - strand, within CA265_RS01625at 419.148 kb on - strand, within CA265_RS01625at 419.150 kb on - strand, within CA265_RS01625at 419.150 kb on - strand, within CA265_RS01625at 419.151 kb on + strand, within CA265_RS01625at 419.152 kb on - strand, within CA265_RS01625at 419.152 kb on - strand, within CA265_RS01625at 419.157 kb on - strand, within CA265_RS01625at 419.223 kb on - strandat 419.223 kb on - strandat 419.245 kb on + strandat 419.245 kb on + strandat 419.347 kb on - strand, within CA265_RS01630at 419.349 kb on - strand, within CA265_RS01630at 419.381 kb on - strand, within CA265_RS01630at 419.484 kb on - strand, within CA265_RS01630at 419.493 kb on + strand, within CA265_RS01630at 419.533 kb on + strand, within CA265_RS01630at 419.562 kb on + strand, within CA265_RS01630at 419.563 kb on - strand, within CA265_RS01630at 419.565 kb on - strand, within CA265_RS01630at 419.577 kb on + strand, within CA265_RS01630at 419.589 kb on + strand, within CA265_RS01630

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
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417,095 + CA265_RS01610 0.61 -3.0
417,099 - CA265_RS01610 0.62 -1.2
417,099 - CA265_RS01610 0.62 -1.9
417,144 - CA265_RS01610 0.68 +0.6
417,294 - CA265_RS01610 0.90 -0.6
417,310 + +1.2
417,311 - -2.4
417,320 - -1.1
417,412 + +1.3
417,434 + +0.2
417,435 - +1.9
417,469 - +1.2
417,469 - -1.9
417,522 - CA265_RS01615 0.14 -0.3
417,522 - CA265_RS01615 0.14 -1.5
417,587 + CA265_RS01615 0.30 -1.1
417,588 - CA265_RS01615 0.31 +1.3
417,619 + +0.8
417,653 + CA265_RS01615 0.47 -0.1
417,653 + CA265_RS01615 0.47 -1.3
417,654 - CA265_RS01615 0.47 -0.1
417,668 - CA265_RS01615 0.51 +1.0
417,668 - CA265_RS01615 0.51 -1.2
417,752 - CA265_RS01615 0.72 -1.9
417,779 - CA265_RS01615 0.79 -3.2
417,781 - CA265_RS01615 0.79 +0.4
417,825 - +1.0
417,853 + +0.4
417,962 + -1.8
417,975 - +0.5
417,987 - +0.9
418,054 + +1.3
418,060 - +0.3
418,114 + +0.8
418,115 - -0.2
418,115 - -2.7
418,211 + CA265_RS01620 0.27 +0.4
418,212 - CA265_RS01620 0.27 -2.4
418,237 + CA265_RS01620 0.31 -2.0
418,271 - CA265_RS01620 0.38 -1.0
418,272 + CA265_RS01620 0.38 -0.4
418,273 - CA265_RS01620 0.38 -2.0
418,357 - CA265_RS01620 0.53 -3.0
418,378 - CA265_RS01620 0.57 -2.4
418,404 + CA265_RS01620 0.62 -3.5
418,405 - CA265_RS01620 0.62 -0.5
418,466 + CA265_RS01620 0.73 -4.0
418,599 - +0.4
418,660 - +0.6
418,687 + CA265_RS01625 0.10 +0.4
418,711 + CA265_RS01625 0.14 -0.3
418,718 + CA265_RS01625 0.15 -0.0
418,741 + CA265_RS01625 0.19 +1.1
418,780 - CA265_RS01625 0.26 +1.1
418,782 + CA265_RS01625 0.26 +0.5
418,819 + CA265_RS01625 0.32 -2.8
418,930 + CA265_RS01625 0.51 +0.3
418,965 + CA265_RS01625 0.57 +0.1
418,965 + CA265_RS01625 0.57 +0.4
418,965 + CA265_RS01625 0.57 -0.1
418,965 + CA265_RS01625 0.57 -0.8
418,981 + CA265_RS01625 0.59 -0.2
418,982 - CA265_RS01625 0.60 -0.3
419,010 - CA265_RS01625 0.64 -0.0
419,029 - CA265_RS01625 0.68 +0.8
419,029 - CA265_RS01625 0.68 -1.4
419,031 + CA265_RS01625 0.68 +3.1
419,031 + CA265_RS01625 0.68 -0.5
419,031 + CA265_RS01625 0.68 -2.0
419,054 + CA265_RS01625 0.72 -0.1
419,077 + CA265_RS01625 0.76 +0.5
419,077 + CA265_RS01625 0.76 +0.6
419,077 + CA265_RS01625 0.76 -1.7
419,110 - CA265_RS01625 0.81 +0.4
419,110 - CA265_RS01625 0.81 +1.3
419,114 + CA265_RS01625 0.82 +0.1
419,115 - CA265_RS01625 0.82 +0.4
419,121 - CA265_RS01625 0.83 -1.3
419,148 - CA265_RS01625 0.87 +0.7
419,150 - CA265_RS01625 0.88 +0.3
419,150 - CA265_RS01625 0.88 +0.1
419,151 + CA265_RS01625 0.88 +1.3
419,152 - CA265_RS01625 0.88 +0.5
419,152 - CA265_RS01625 0.88 +0.0
419,157 - CA265_RS01625 0.89 -2.5
419,223 - -0.2
419,223 - -1.6
419,245 + -0.5
419,245 + +0.3
419,347 - CA265_RS01630 0.12 -1.1
419,349 - CA265_RS01630 0.12 +0.3
419,381 - CA265_RS01630 0.16 -2.7
419,484 - CA265_RS01630 0.28 -0.4
419,493 + CA265_RS01630 0.29 -0.1
419,533 + CA265_RS01630 0.34 -3.0
419,562 + CA265_RS01630 0.37 -2.8
419,563 - CA265_RS01630 0.37 +0.3
419,565 - CA265_RS01630 0.38 -3.2
419,577 + CA265_RS01630 0.39 -1.4
419,589 + CA265_RS01630 0.40 -1.0

Or see this region's nucleotide sequence