Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01430

Experiment: R2A with copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01425 and CA265_RS01430 are separated by 21 nucleotidesCA265_RS01430 and CA265_RS01435 are separated by 18 nucleotides CA265_RS01425: CA265_RS01425 - hypothetical protein, at 357,788 to 360,826 _RS01425 CA265_RS01430: CA265_RS01430 - hypothetical protein, at 360,848 to 362,545 _RS01430 CA265_RS01435: CA265_RS01435 - hypothetical protein, at 362,564 to 365,686 _RS01435 Position (kb) 360 361 362 363Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 359.864 kb on - strand, within CA265_RS01425at 359.869 kb on + strand, within CA265_RS01425at 359.870 kb on - strand, within CA265_RS01425at 359.929 kb on - strand, within CA265_RS01425at 359.932 kb on + strand, within CA265_RS01425at 359.958 kb on + strand, within CA265_RS01425at 359.959 kb on - strand, within CA265_RS01425at 360.032 kb on - strandat 360.033 kb on + strand, within CA265_RS01425at 360.051 kb on + strand, within CA265_RS01425at 360.074 kb on - strand, within CA265_RS01425at 360.143 kb on + strand, within CA265_RS01425at 360.171 kb on + strand, within CA265_RS01425at 360.172 kb on - strand, within CA265_RS01425at 360.230 kb on + strand, within CA265_RS01425at 360.230 kb on + strand, within CA265_RS01425at 360.251 kb on + strand, within CA265_RS01425at 360.252 kb on - strand, within CA265_RS01425at 360.292 kb on + strand, within CA265_RS01425at 360.293 kb on - strand, within CA265_RS01425at 360.356 kb on - strand, within CA265_RS01425at 360.457 kb on - strand, within CA265_RS01425at 360.457 kb on - strand, within CA265_RS01425at 360.536 kb on - strandat 360.594 kb on + strandat 360.594 kb on + strandat 360.595 kb on - strandat 360.595 kb on - strandat 360.602 kb on - strandat 360.650 kb on - strandat 360.783 kb on - strandat 360.786 kb on - strandat 360.849 kb on + strandat 360.916 kb on - strandat 361.079 kb on + strand, within CA265_RS01430at 361.099 kb on + strand, within CA265_RS01430at 361.175 kb on - strand, within CA265_RS01430at 361.175 kb on - strand, within CA265_RS01430at 361.186 kb on + strand, within CA265_RS01430at 361.187 kb on - strand, within CA265_RS01430at 361.243 kb on - strand, within CA265_RS01430at 361.243 kb on - strand, within CA265_RS01430at 361.244 kb on + strand, within CA265_RS01430at 361.244 kb on + strand, within CA265_RS01430at 361.245 kb on - strand, within CA265_RS01430at 361.435 kb on + strand, within CA265_RS01430at 361.436 kb on - strand, within CA265_RS01430at 361.640 kb on - strand, within CA265_RS01430at 361.648 kb on + strand, within CA265_RS01430at 361.648 kb on + strand, within CA265_RS01430at 361.648 kb on + strandat 361.716 kb on + strand, within CA265_RS01430at 361.716 kb on + strand, within CA265_RS01430at 361.767 kb on - strand, within CA265_RS01430at 361.767 kb on - strand, within CA265_RS01430at 361.836 kb on - strand, within CA265_RS01430at 361.871 kb on - strand, within CA265_RS01430at 361.976 kb on + strand, within CA265_RS01430at 361.989 kb on + strand, within CA265_RS01430at 361.993 kb on + strand, within CA265_RS01430at 361.994 kb on - strand, within CA265_RS01430at 362.053 kb on - strand, within CA265_RS01430at 362.107 kb on + strand, within CA265_RS01430at 362.144 kb on - strand, within CA265_RS01430at 362.145 kb on + strand, within CA265_RS01430at 362.146 kb on - strand, within CA265_RS01430at 362.146 kb on - strand, within CA265_RS01430at 362.168 kb on - strand, within CA265_RS01430at 362.198 kb on + strand, within CA265_RS01430at 362.257 kb on + strand, within CA265_RS01430at 362.302 kb on - strand, within CA265_RS01430at 362.338 kb on + strand, within CA265_RS01430at 362.378 kb on + strandat 362.457 kb on - strandat 362.493 kb on - strandat 362.505 kb on - strandat 362.512 kb on + strandat 362.524 kb on + strandat 362.527 kb on - strandat 362.528 kb on + strandat 362.528 kb on + strandat 362.529 kb on - strandat 362.533 kb on - strandat 362.610 kb on + strandat 362.614 kb on - strandat 362.673 kb on - strandat 362.693 kb on + strandat 362.694 kb on - strandat 362.694 kb on - strandat 362.708 kb on + strandat 362.771 kb on + strandat 362.815 kb on + strandat 362.816 kb on - strandat 362.863 kb on + strandat 362.864 kb on - strandat 362.906 kb on + strand, within CA265_RS01435at 363.011 kb on + strand, within CA265_RS01435at 363.012 kb on - strand, within CA265_RS01435at 363.018 kb on - strand, within CA265_RS01435at 363.059 kb on + strand, within CA265_RS01435at 363.076 kb on - strand, within CA265_RS01435at 363.076 kb on - strand, within CA265_RS01435at 363.088 kb on + strand, within CA265_RS01435at 363.088 kb on + strand, within CA265_RS01435at 363.088 kb on + strand, within CA265_RS01435at 363.089 kb on - strand, within CA265_RS01435at 363.089 kb on - strandat 363.111 kb on + strand, within CA265_RS01435at 363.132 kb on - strand, within CA265_RS01435at 363.233 kb on + strand, within CA265_RS01435at 363.233 kb on + strand, within CA265_RS01435at 363.299 kb on - strand, within CA265_RS01435at 363.309 kb on + strand, within CA265_RS01435at 363.326 kb on - strand, within CA265_RS01435at 363.333 kb on + strand, within CA265_RS01435at 363.386 kb on - strand, within CA265_RS01435at 363.398 kb on - strand, within CA265_RS01435at 363.459 kb on - strand, within CA265_RS01435at 363.464 kb on - strand, within CA265_RS01435at 363.480 kb on + strand, within CA265_RS01435at 363.481 kb on - strand, within CA265_RS01435at 363.536 kb on + strand, within CA265_RS01435at 363.537 kb on - strand, within CA265_RS01435

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
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359,864 - CA265_RS01425 0.68 -0.3
359,869 + CA265_RS01425 0.68 -1.3
359,870 - CA265_RS01425 0.69 -1.2
359,929 - CA265_RS01425 0.70 -0.5
359,932 + CA265_RS01425 0.71 -0.7
359,958 + CA265_RS01425 0.71 -0.4
359,959 - CA265_RS01425 0.71 +0.4
360,032 - +0.8
360,033 + CA265_RS01425 0.74 -0.6
360,051 + CA265_RS01425 0.74 -1.0
360,074 - CA265_RS01425 0.75 -1.3
360,143 + CA265_RS01425 0.77 -0.3
360,171 + CA265_RS01425 0.78 -1.8
360,172 - CA265_RS01425 0.78 +0.0
360,230 + CA265_RS01425 0.80 +0.2
360,230 + CA265_RS01425 0.80 -1.2
360,251 + CA265_RS01425 0.81 +0.2
360,252 - CA265_RS01425 0.81 +0.6
360,292 + CA265_RS01425 0.82 -2.7
360,293 - CA265_RS01425 0.82 -3.1
360,356 - CA265_RS01425 0.85 -0.8
360,457 - CA265_RS01425 0.88 -0.0
360,457 - CA265_RS01425 0.88 +1.2
360,536 - +0.5
360,594 + -2.0
360,594 + -1.3
360,595 - -1.8
360,595 - -1.3
360,602 - +0.1
360,650 - -0.1
360,783 - -2.7
360,786 - -1.5
360,849 + -0.4
360,916 - -3.0
361,079 + CA265_RS01430 0.14 -0.6
361,099 + CA265_RS01430 0.15 -1.5
361,175 - CA265_RS01430 0.19 -2.8
361,175 - CA265_RS01430 0.19 -1.8
361,186 + CA265_RS01430 0.20 -0.3
361,187 - CA265_RS01430 0.20 -0.9
361,243 - CA265_RS01430 0.23 -2.9
361,243 - CA265_RS01430 0.23 +0.2
361,244 + CA265_RS01430 0.23 -0.9
361,244 + CA265_RS01430 0.23 -2.2
361,245 - CA265_RS01430 0.23 -1.6
361,435 + CA265_RS01430 0.35 -0.6
361,436 - CA265_RS01430 0.35 +0.2
361,640 - CA265_RS01430 0.47 -0.0
361,648 + CA265_RS01430 0.47 +0.5
361,648 + CA265_RS01430 0.47 -1.0
361,648 + +0.8
361,716 + CA265_RS01430 0.51 -1.2
361,716 + CA265_RS01430 0.51 -3.9
361,767 - CA265_RS01430 0.54 -1.4
361,767 - CA265_RS01430 0.54 -1.1
361,836 - CA265_RS01430 0.58 -1.8
361,871 - CA265_RS01430 0.60 -1.0
361,976 + CA265_RS01430 0.66 -0.1
361,989 + CA265_RS01430 0.67 -1.5
361,993 + CA265_RS01430 0.67 -1.5
361,994 - CA265_RS01430 0.67 -0.7
362,053 - CA265_RS01430 0.71 -0.3
362,107 + CA265_RS01430 0.74 -0.8
362,144 - CA265_RS01430 0.76 -1.2
362,145 + CA265_RS01430 0.76 -0.8
362,146 - CA265_RS01430 0.76 -0.6
362,146 - CA265_RS01430 0.76 -0.6
362,168 - CA265_RS01430 0.78 -1.8
362,198 + CA265_RS01430 0.80 -0.8
362,257 + CA265_RS01430 0.83 +0.0
362,302 - CA265_RS01430 0.86 -2.9
362,338 + CA265_RS01430 0.88 +0.2
362,378 + -0.4
362,457 - -0.3
362,493 - -2.0
362,505 - +1.6
362,512 + -0.2
362,524 + -3.7
362,527 - -2.8
362,528 + -2.1
362,528 + -2.1
362,529 - +0.2
362,533 - -2.8
362,610 + +1.3
362,614 - -4.6
362,673 - -2.3
362,693 + +0.4
362,694 - -0.5
362,694 - -3.5
362,708 + -1.4
362,771 + -0.5
362,815 + +0.8
362,816 - -1.2
362,863 + +0.2
362,864 - -0.9
362,906 + CA265_RS01435 0.11 +0.7
363,011 + CA265_RS01435 0.14 -1.0
363,012 - CA265_RS01435 0.14 -0.1
363,018 - CA265_RS01435 0.15 -0.6
363,059 + CA265_RS01435 0.16 -2.4
363,076 - CA265_RS01435 0.16 +0.7
363,076 - CA265_RS01435 0.16 -0.2
363,088 + CA265_RS01435 0.17 +0.6
363,088 + CA265_RS01435 0.17 -2.2
363,088 + CA265_RS01435 0.17 +2.3
363,089 - CA265_RS01435 0.17 -1.9
363,089 - +0.8
363,111 + CA265_RS01435 0.18 +3.2
363,132 - CA265_RS01435 0.18 +0.6
363,233 + CA265_RS01435 0.21 -0.6
363,233 + CA265_RS01435 0.21 +0.9
363,299 - CA265_RS01435 0.24 -0.1
363,309 + CA265_RS01435 0.24 +0.5
363,326 - CA265_RS01435 0.24 -1.7
363,333 + CA265_RS01435 0.25 -1.7
363,386 - CA265_RS01435 0.26 +1.5
363,398 - CA265_RS01435 0.27 +0.4
363,459 - CA265_RS01435 0.29 +1.3
363,464 - CA265_RS01435 0.29 -3.5
363,480 + CA265_RS01435 0.29 +0.9
363,481 - CA265_RS01435 0.29 -1.7
363,536 + CA265_RS01435 0.31 +0.4
363,537 - CA265_RS01435 0.31 -0.6

Or see this region's nucleotide sequence