Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00570

Experiment: R2A with copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00570 and CA265_RS00575 are separated by 30 nucleotides CA265_RS00570: CA265_RS00570 - hypothetical protein, at 126,030 to 126,410 _RS00570 CA265_RS00575: CA265_RS00575 - permease, at 126,441 to 127,865 _RS00575 Position (kb) 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 125.058 kb on + strandat 125.059 kb on - strandat 125.079 kb on + strandat 125.080 kb on - strandat 125.082 kb on + strandat 125.240 kb on - strandat 125.241 kb on + strandat 125.242 kb on - strandat 125.342 kb on + strandat 125.349 kb on + strandat 125.350 kb on - strandat 125.351 kb on + strandat 125.351 kb on + strandat 125.352 kb on - strandat 125.360 kb on + strandat 125.360 kb on + strandat 125.360 kb on + strandat 125.362 kb on + strandat 125.362 kb on + strandat 125.376 kb on - strandat 125.466 kb on - strandat 125.502 kb on + strandat 125.544 kb on - strandat 125.580 kb on - strandat 125.585 kb on + strandat 125.586 kb on - strandat 125.586 kb on - strandat 125.639 kb on - strandat 125.673 kb on - strandat 125.903 kb on - strandat 125.962 kb on + strandat 126.023 kb on + strandat 126.026 kb on + strandat 126.056 kb on - strandat 126.085 kb on + strand, within CA265_RS00570at 126.092 kb on + strand, within CA265_RS00570at 126.164 kb on + strand, within CA265_RS00570at 126.221 kb on + strand, within CA265_RS00570at 126.221 kb on + strand, within CA265_RS00570at 126.296 kb on - strand, within CA265_RS00570at 126.329 kb on + strand, within CA265_RS00570at 126.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.16 mM
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125,058 + -1.9
125,059 - -1.0
125,079 + +0.3
125,080 - -2.5
125,082 + -3.9
125,240 - -0.5
125,241 + +0.7
125,242 - +0.1
125,342 + +1.3
125,349 + -1.2
125,350 - +0.9
125,351 + -0.4
125,351 + -1.0
125,352 - -0.6
125,360 + +0.1
125,360 + -0.1
125,360 + -0.9
125,362 + -0.3
125,362 + +2.9
125,376 - -0.3
125,466 - +1.2
125,502 + +0.1
125,544 - -0.1
125,580 - -0.7
125,585 + -2.3
125,586 - -0.0
125,586 - -0.5
125,639 - +0.1
125,673 - -1.1
125,903 - +0.4
125,962 + +0.2
126,023 + -0.5
126,026 + -0.7
126,056 - +1.0
126,085 + CA265_RS00570 0.14 +0.4
126,092 + CA265_RS00570 0.16 -1.4
126,164 + CA265_RS00570 0.35 +0.0
126,221 + CA265_RS00570 0.50 -2.3
126,221 + CA265_RS00570 0.50 +0.2
126,296 - CA265_RS00570 0.70 +0.9
126,329 + CA265_RS00570 0.78 +1.1
126,408 + -2.6

Or see this region's nucleotide sequence