Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28880

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28875 and AO356_28880 are separated by 94 nucleotidesAO356_28880 and AO356_28885 are separated by 141 nucleotides AO356_28875: AO356_28875 - porin, at 6,715,767 to 6,717,020 _28875 AO356_28880: AO356_28880 - damage-inducible protein CinA, at 6,717,115 to 6,718,419 _28880 AO356_28885: AO356_28885 - sodium:dicarboxylate symporter, at 6,718,561 to 6,719,886 _28885 Position (kb) 6717 6718 6719Strain fitness (log2 ratio) -1 0 1at 6716.171 kb on - strand, within AO356_28875at 6716.171 kb on - strand, within AO356_28875at 6716.245 kb on + strand, within AO356_28875at 6716.338 kb on + strand, within AO356_28875at 6716.339 kb on - strand, within AO356_28875at 6716.344 kb on + strand, within AO356_28875at 6716.344 kb on + strand, within AO356_28875at 6716.344 kb on + strand, within AO356_28875at 6716.345 kb on - strand, within AO356_28875at 6716.375 kb on - strand, within AO356_28875at 6716.375 kb on - strand, within AO356_28875at 6716.389 kb on + strand, within AO356_28875at 6716.389 kb on + strand, within AO356_28875at 6716.536 kb on + strand, within AO356_28875at 6716.536 kb on + strand, within AO356_28875at 6716.536 kb on + strand, within AO356_28875at 6716.868 kb on - strand, within AO356_28875at 6717.041 kb on + strandat 6717.160 kb on - strandat 6717.371 kb on + strand, within AO356_28880at 6717.374 kb on + strand, within AO356_28880at 6717.375 kb on - strand, within AO356_28880at 6717.391 kb on + strand, within AO356_28880at 6717.612 kb on - strand, within AO356_28880at 6717.719 kb on + strand, within AO356_28880at 6717.719 kb on + strand, within AO356_28880at 6717.770 kb on + strand, within AO356_28880at 6717.771 kb on - strand, within AO356_28880at 6717.771 kb on - strand, within AO356_28880at 6717.771 kb on - strand, within AO356_28880at 6717.771 kb on - strand, within AO356_28880at 6717.771 kb on - strand, within AO356_28880at 6718.033 kb on - strand, within AO356_28880at 6718.034 kb on + strand, within AO356_28880at 6718.034 kb on + strand, within AO356_28880at 6718.034 kb on + strand, within AO356_28880at 6718.067 kb on + strand, within AO356_28880at 6718.068 kb on - strand, within AO356_28880at 6718.068 kb on - strand, within AO356_28880at 6718.068 kb on - strand, within AO356_28880at 6718.369 kb on + strandat 6718.419 kb on + strandat 6718.419 kb on + strandat 6718.419 kb on + strandat 6718.420 kb on - strandat 6718.445 kb on + strandat 6718.445 kb on + strandat 6718.446 kb on - strandat 6718.446 kb on - strandat 6718.517 kb on + strandat 6718.562 kb on + strandat 6718.563 kb on - strandat 6718.958 kb on + strand, within AO356_28885at 6718.958 kb on + strand, within AO356_28885at 6719.202 kb on - strand, within AO356_28885at 6719.310 kb on - strand, within AO356_28885at 6719.390 kb on - strand, within AO356_28885

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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6,716,171 - AO356_28875 0.32 +0.6
6,716,171 - AO356_28875 0.32 +0.8
6,716,245 + AO356_28875 0.38 -0.1
6,716,338 + AO356_28875 0.46 +0.7
6,716,339 - AO356_28875 0.46 -1.3
6,716,344 + AO356_28875 0.46 +1.0
6,716,344 + AO356_28875 0.46 +0.2
6,716,344 + AO356_28875 0.46 +0.9
6,716,345 - AO356_28875 0.46 +0.7
6,716,375 - AO356_28875 0.48 -0.9
6,716,375 - AO356_28875 0.48 +0.2
6,716,389 + AO356_28875 0.50 -0.6
6,716,389 + AO356_28875 0.50 -0.1
6,716,536 + AO356_28875 0.61 +0.7
6,716,536 + AO356_28875 0.61 +1.3
6,716,536 + AO356_28875 0.61 -0.1
6,716,868 - AO356_28875 0.88 +1.3
6,717,041 + -0.5
6,717,160 - +0.6
6,717,371 + AO356_28880 0.20 +0.1
6,717,374 + AO356_28880 0.20 -1.6
6,717,375 - AO356_28880 0.20 -0.5
6,717,391 + AO356_28880 0.21 +0.5
6,717,612 - AO356_28880 0.38 -0.5
6,717,719 + AO356_28880 0.46 +0.1
6,717,719 + AO356_28880 0.46 +0.3
6,717,770 + AO356_28880 0.50 -0.6
6,717,771 - AO356_28880 0.50 -1.3
6,717,771 - AO356_28880 0.50 +0.9
6,717,771 - AO356_28880 0.50 +0.5
6,717,771 - AO356_28880 0.50 +0.5
6,717,771 - AO356_28880 0.50 -0.1
6,718,033 - AO356_28880 0.70 -0.0
6,718,034 + AO356_28880 0.70 -0.6
6,718,034 + AO356_28880 0.70 +1.4
6,718,034 + AO356_28880 0.70 -0.9
6,718,067 + AO356_28880 0.73 +0.1
6,718,068 - AO356_28880 0.73 +0.3
6,718,068 - AO356_28880 0.73 +1.5
6,718,068 - AO356_28880 0.73 +0.6
6,718,369 + +0.1
6,718,419 + -0.0
6,718,419 + -1.5
6,718,419 + -0.3
6,718,420 - -0.1
6,718,445 + -0.8
6,718,445 + -1.5
6,718,446 - +0.7
6,718,446 - -0.2
6,718,517 + -1.4
6,718,562 + -0.3
6,718,563 - -0.6
6,718,958 + AO356_28885 0.30 -0.4
6,718,958 + AO356_28885 0.30 +0.8
6,719,202 - AO356_28885 0.48 -0.0
6,719,310 - AO356_28885 0.56 -0.2
6,719,390 - AO356_28885 0.63 -0.4

Or see this region's nucleotide sequence