Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28500 and AO356_28505 are separated by 204 nucleotides AO356_28505 and AO356_28510 are separated by 183 nucleotides
AO356_28500: AO356_28500 - Xylose isomerase (EC 5.3.1.5) (from data) , at 6,622,913 to 6,624,229
_28500
AO356_28505: AO356_28505 - sugar ABC transporter substrate-binding protein, at 6,624,434 to 6,625,435
_28505
AO356_28510: AO356_28510 - xylose transporter, at 6,625,619 to 6,627,175
_28510
Position (kb)
6624
6625
6626 Strain fitness (log2 ratio)
-2
-1
0
1 at 6623.463 kb on - strand, within AO356_28500 at 6623.463 kb on - strand, within AO356_28500 at 6623.463 kb on - strand, within AO356_28500 at 6623.466 kb on + strand, within AO356_28500 at 6623.466 kb on + strand, within AO356_28500 at 6623.467 kb on - strand, within AO356_28500 at 6623.643 kb on - strand, within AO356_28500 at 6623.958 kb on + strand, within AO356_28500 at 6623.959 kb on - strand, within AO356_28500 at 6623.959 kb on - strand, within AO356_28500 at 6623.959 kb on - strand, within AO356_28500 at 6623.959 kb on - strand, within AO356_28500 at 6623.959 kb on - strand, within AO356_28500 at 6624.217 kb on + strand at 6624.218 kb on - strand at 6624.364 kb on + strand at 6624.418 kb on + strand at 6624.418 kb on + strand at 6624.419 kb on - strand at 6624.431 kb on + strand at 6624.431 kb on + strand at 6624.432 kb on - strand at 6624.451 kb on + strand at 6624.452 kb on - strand at 6624.572 kb on + strand, within AO356_28505 at 6624.573 kb on - strand, within AO356_28505 at 6624.881 kb on + strand, within AO356_28505 at 6624.882 kb on - strand, within AO356_28505 at 6625.313 kb on + strand, within AO356_28505 at 6625.408 kb on + strand at 6625.588 kb on + strand at 6625.588 kb on + strand at 6625.588 kb on + strand at 6625.628 kb on + strand at 6625.629 kb on - strand at 6626.216 kb on + strand, within AO356_28510 at 6626.217 kb on - strand, within AO356_28510 at 6626.217 kb on - strand, within AO356_28510 at 6626.366 kb on + strand, within AO356_28510
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 6,623,463 - AO356_28500 0.42 -0.3 6,623,463 - AO356_28500 0.42 -0.7 6,623,463 - AO356_28500 0.42 +0.5 6,623,466 + AO356_28500 0.42 +0.5 6,623,466 + AO356_28500 0.42 +0.4 6,623,467 - AO356_28500 0.42 +0.4 6,623,643 - AO356_28500 0.55 -0.2 6,623,958 + AO356_28500 0.79 -1.3 6,623,959 - AO356_28500 0.79 -0.5 6,623,959 - AO356_28500 0.79 +0.3 6,623,959 - AO356_28500 0.79 -0.8 6,623,959 - AO356_28500 0.79 +0.4 6,623,959 - AO356_28500 0.79 -0.8 6,624,217 + +1.4 6,624,218 - -0.8 6,624,364 + +0.6 6,624,418 + -0.9 6,624,418 + +0.0 6,624,419 - -1.2 6,624,431 + -0.8 6,624,431 + +0.2 6,624,432 - +0.0 6,624,451 + +0.0 6,624,452 - +0.5 6,624,572 + AO356_28505 0.14 -0.5 6,624,573 - AO356_28505 0.14 -1.8 6,624,881 + AO356_28505 0.45 +0.1 6,624,882 - AO356_28505 0.45 -0.0 6,625,313 + AO356_28505 0.88 -1.2 6,625,408 + +0.0 6,625,588 + -0.6 6,625,588 + +0.9 6,625,588 + -0.7 6,625,628 + -0.6 6,625,629 - +0.6 6,626,216 + AO356_28510 0.38 -0.1 6,626,217 - AO356_28510 0.38 -0.2 6,626,217 - AO356_28510 0.38 -0.6 6,626,366 + AO356_28510 0.48 +1.0
Or see this region's nucleotide sequence