Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28505

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28500 and AO356_28505 are separated by 204 nucleotidesAO356_28505 and AO356_28510 are separated by 183 nucleotides AO356_28500: AO356_28500 - Xylose isomerase (EC 5.3.1.5) (from data), at 6,622,913 to 6,624,229 _28500 AO356_28505: AO356_28505 - sugar ABC transporter substrate-binding protein, at 6,624,434 to 6,625,435 _28505 AO356_28510: AO356_28510 - xylose transporter, at 6,625,619 to 6,627,175 _28510 Position (kb) 6624 6625 6626Strain fitness (log2 ratio) -2 -1 0 1at 6623.463 kb on - strand, within AO356_28500at 6623.463 kb on - strand, within AO356_28500at 6623.463 kb on - strand, within AO356_28500at 6623.466 kb on + strand, within AO356_28500at 6623.466 kb on + strand, within AO356_28500at 6623.467 kb on - strand, within AO356_28500at 6623.643 kb on - strand, within AO356_28500at 6623.958 kb on + strand, within AO356_28500at 6623.959 kb on - strand, within AO356_28500at 6623.959 kb on - strand, within AO356_28500at 6623.959 kb on - strand, within AO356_28500at 6623.959 kb on - strand, within AO356_28500at 6623.959 kb on - strand, within AO356_28500at 6624.217 kb on + strandat 6624.218 kb on - strandat 6624.364 kb on + strandat 6624.418 kb on + strandat 6624.418 kb on + strandat 6624.419 kb on - strandat 6624.431 kb on + strandat 6624.431 kb on + strandat 6624.432 kb on - strandat 6624.451 kb on + strandat 6624.452 kb on - strandat 6624.572 kb on + strand, within AO356_28505at 6624.573 kb on - strand, within AO356_28505at 6624.881 kb on + strand, within AO356_28505at 6624.882 kb on - strand, within AO356_28505at 6625.313 kb on + strand, within AO356_28505at 6625.408 kb on + strandat 6625.588 kb on + strandat 6625.588 kb on + strandat 6625.588 kb on + strandat 6625.628 kb on + strandat 6625.629 kb on - strandat 6626.216 kb on + strand, within AO356_28510at 6626.217 kb on - strand, within AO356_28510at 6626.217 kb on - strand, within AO356_28510at 6626.366 kb on + strand, within AO356_28510

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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6,623,463 - AO356_28500 0.42 -0.3
6,623,463 - AO356_28500 0.42 -0.7
6,623,463 - AO356_28500 0.42 +0.5
6,623,466 + AO356_28500 0.42 +0.5
6,623,466 + AO356_28500 0.42 +0.4
6,623,467 - AO356_28500 0.42 +0.4
6,623,643 - AO356_28500 0.55 -0.2
6,623,958 + AO356_28500 0.79 -1.3
6,623,959 - AO356_28500 0.79 -0.5
6,623,959 - AO356_28500 0.79 +0.3
6,623,959 - AO356_28500 0.79 -0.8
6,623,959 - AO356_28500 0.79 +0.4
6,623,959 - AO356_28500 0.79 -0.8
6,624,217 + +1.4
6,624,218 - -0.8
6,624,364 + +0.6
6,624,418 + -0.9
6,624,418 + +0.0
6,624,419 - -1.2
6,624,431 + -0.8
6,624,431 + +0.2
6,624,432 - +0.0
6,624,451 + +0.0
6,624,452 - +0.5
6,624,572 + AO356_28505 0.14 -0.5
6,624,573 - AO356_28505 0.14 -1.8
6,624,881 + AO356_28505 0.45 +0.1
6,624,882 - AO356_28505 0.45 -0.0
6,625,313 + AO356_28505 0.88 -1.2
6,625,408 + +0.0
6,625,588 + -0.6
6,625,588 + +0.9
6,625,588 + -0.7
6,625,628 + -0.6
6,625,629 - +0.6
6,626,216 + AO356_28510 0.38 -0.1
6,626,217 - AO356_28510 0.38 -0.2
6,626,217 - AO356_28510 0.38 -0.6
6,626,366 + AO356_28510 0.48 +1.0

Or see this region's nucleotide sequence