Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27400

Experiment: Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_27390 and AO356_27395 are separated by 29 nucleotidesAO356_27395 and AO356_27400 are separated by 150 nucleotidesAO356_27400 and AO356_27405 are separated by 102 nucleotidesAO356_27405 and AO356_27410 are separated by 18 nucleotides AO356_27390: AO356_27390 - ATPase, at 6,241,647 to 6,242,996 _27390 AO356_27395: AO356_27395 - chemotaxis protein CheY, at 6,243,026 to 6,243,790 _27395 AO356_27400: AO356_27400 - 1,2-oxophytodienoate reductase, at 6,243,941 to 6,245,059 _27400 AO356_27405: AO356_27405 - MarR family transcriptional regulator, at 6,245,162 to 6,245,545 _27405 AO356_27410: AO356_27410 - TonB-dependent receptor, at 6,245,564 to 6,247,756 _27410 Position (kb) 6243 6244 6245 6246Strain fitness (log2 ratio) -2 -1 0 1at 6243.422 kb on + strand, within AO356_27395at 6243.423 kb on - strand, within AO356_27395at 6243.474 kb on + strand, within AO356_27395at 6243.829 kb on + strandat 6243.957 kb on - strandat 6244.046 kb on + strandat 6244.078 kb on + strand, within AO356_27400at 6244.360 kb on - strand, within AO356_27400at 6244.720 kb on - strand, within AO356_27400at 6244.923 kb on + strand, within AO356_27400at 6244.948 kb on + strandat 6245.033 kb on + strandat 6245.033 kb on + strandat 6245.034 kb on - strandat 6245.034 kb on - strandat 6245.093 kb on - strandat 6245.093 kb on - strandat 6245.129 kb on + strandat 6245.143 kb on + strandat 6245.144 kb on - strandat 6245.145 kb on + strandat 6245.146 kb on - strandat 6245.146 kb on - strandat 6245.146 kb on - strandat 6245.146 kb on - strandat 6245.146 kb on - strandat 6245.146 kb on - strandat 6245.146 kb on - strandat 6245.234 kb on - strand, within AO356_27405at 6245.285 kb on - strand, within AO356_27405at 6245.408 kb on + strand, within AO356_27405at 6245.566 kb on - strandat 6245.573 kb on - strandat 6245.575 kb on - strandat 6245.621 kb on - strandat 6245.646 kb on + strandat 6245.706 kb on + strandat 6245.765 kb on - strandat 6245.835 kb on - strand, within AO356_27410at 6245.934 kb on + strand, within AO356_27410at 6245.935 kb on - strand, within AO356_27410at 6245.935 kb on - strand, within AO356_27410at 6245.948 kb on - strand, within AO356_27410at 6245.993 kb on - strand, within AO356_27410at 6245.993 kb on - strand, within AO356_27410at 6245.995 kb on + strand, within AO356_27410at 6245.996 kb on - strand, within AO356_27410at 6246.013 kb on - strand, within AO356_27410at 6246.034 kb on + strand, within AO356_27410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
remove
6,243,422 + AO356_27395 0.52 +0.1
6,243,423 - AO356_27395 0.52 -1.4
6,243,474 + AO356_27395 0.59 -0.6
6,243,829 + -1.8
6,243,957 - +0.4
6,244,046 + +0.8
6,244,078 + AO356_27400 0.12 -1.0
6,244,360 - AO356_27400 0.37 +0.1
6,244,720 - AO356_27400 0.70 -1.2
6,244,923 + AO356_27400 0.88 +0.0
6,244,948 + +0.5
6,245,033 + +0.3
6,245,033 + +0.4
6,245,034 - +1.5
6,245,034 - +1.3
6,245,093 - -0.1
6,245,093 - -0.8
6,245,129 + -0.4
6,245,143 + -0.1
6,245,144 - -0.2
6,245,145 + +0.1
6,245,146 - -0.0
6,245,146 - +0.0
6,245,146 - -0.4
6,245,146 - -0.5
6,245,146 - -0.5
6,245,146 - -0.2
6,245,146 - +0.6
6,245,234 - AO356_27405 0.19 +0.9
6,245,285 - AO356_27405 0.32 -0.2
6,245,408 + AO356_27405 0.64 +0.6
6,245,566 - +0.7
6,245,573 - +0.4
6,245,575 - +0.6
6,245,621 - +0.7
6,245,646 + -0.5
6,245,706 + +1.0
6,245,765 - -0.1
6,245,835 - AO356_27410 0.12 +0.1
6,245,934 + AO356_27410 0.17 +0.9
6,245,935 - AO356_27410 0.17 +1.0
6,245,935 - AO356_27410 0.17 -0.9
6,245,948 - AO356_27410 0.18 -0.5
6,245,993 - AO356_27410 0.20 -1.3
6,245,993 - AO356_27410 0.20 -1.3
6,245,995 + AO356_27410 0.20 +0.6
6,245,996 - AO356_27410 0.20 +1.0
6,246,013 - AO356_27410 0.20 +0.3
6,246,034 + AO356_27410 0.21 -0.4

Or see this region's nucleotide sequence