Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27290

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27280 and AO356_27285 are separated by 147 nucleotidesAO356_27285 and AO356_27290 overlap by 1 nucleotidesAO356_27290 and AO356_27295 are separated by 23 nucleotides AO356_27280: AO356_27280 - XRE family transcriptional regulator, at 6,218,831 to 6,219,493 _27280 AO356_27285: AO356_27285 - hypothetical protein, at 6,219,641 to 6,219,907 _27285 AO356_27290: AO356_27290 - cytochrome B, at 6,219,907 to 6,220,452 _27290 AO356_27295: AO356_27295 - hypothetical protein, at 6,220,476 to 6,221,744 _27295 Position (kb) 6219 6220 6221Strain fitness (log2 ratio) -1 0 1at 6218.929 kb on + strand, within AO356_27280at 6218.958 kb on + strand, within AO356_27280at 6219.421 kb on - strand, within AO356_27280at 6219.579 kb on + strandat 6219.813 kb on - strand, within AO356_27285at 6219.821 kb on + strand, within AO356_27285at 6219.821 kb on + strand, within AO356_27285at 6219.821 kb on + strand, within AO356_27285at 6219.822 kb on - strand, within AO356_27285at 6219.822 kb on - strand, within AO356_27285at 6219.897 kb on + strandat 6219.898 kb on - strandat 6219.898 kb on - strandat 6219.898 kb on - strandat 6219.988 kb on + strand, within AO356_27290at 6219.988 kb on + strand, within AO356_27290at 6219.989 kb on - strand, within AO356_27290at 6219.989 kb on - strand, within AO356_27290at 6220.037 kb on - strand, within AO356_27290at 6220.037 kb on - strand, within AO356_27290at 6220.451 kb on - strandat 6220.451 kb on - strandat 6220.451 kb on - strandat 6220.475 kb on + strandat 6220.549 kb on + strandat 6220.549 kb on + strandat 6220.549 kb on + strandat 6220.549 kb on + strandat 6220.550 kb on - strandat 6220.550 kb on - strandat 6220.550 kb on - strandat 6220.550 kb on - strandat 6220.609 kb on - strand, within AO356_27295at 6220.732 kb on + strand, within AO356_27295at 6220.732 kb on + strand, within AO356_27295at 6220.733 kb on - strand, within AO356_27295at 6220.733 kb on - strand, within AO356_27295at 6220.733 kb on - strand, within AO356_27295at 6220.830 kb on + strand, within AO356_27295at 6220.830 kb on + strand, within AO356_27295at 6220.831 kb on - strand, within AO356_27295at 6220.893 kb on + strand, within AO356_27295at 6220.894 kb on - strand, within AO356_27295at 6220.894 kb on - strand, within AO356_27295at 6221.104 kb on - strand, within AO356_27295at 6221.109 kb on + strand, within AO356_27295at 6221.109 kb on + strand, within AO356_27295at 6221.177 kb on + strand, within AO356_27295at 6221.178 kb on - strand, within AO356_27295at 6221.178 kb on - strand, within AO356_27295at 6221.178 kb on - strand, within AO356_27295

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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6,218,929 + AO356_27280 0.15 +0.0
6,218,958 + AO356_27280 0.19 -0.6
6,219,421 - AO356_27280 0.89 -0.9
6,219,579 + +0.2
6,219,813 - AO356_27285 0.64 -0.8
6,219,821 + AO356_27285 0.67 +0.8
6,219,821 + AO356_27285 0.67 -0.1
6,219,821 + AO356_27285 0.67 +0.0
6,219,822 - AO356_27285 0.68 -1.6
6,219,822 - AO356_27285 0.68 -1.0
6,219,897 + -0.1
6,219,898 - +1.0
6,219,898 - -0.1
6,219,898 - +0.5
6,219,988 + AO356_27290 0.15 +0.0
6,219,988 + AO356_27290 0.15 +0.3
6,219,989 - AO356_27290 0.15 +0.9
6,219,989 - AO356_27290 0.15 -0.5
6,220,037 - AO356_27290 0.24 +0.7
6,220,037 - AO356_27290 0.24 +0.6
6,220,451 - +0.9
6,220,451 - -0.1
6,220,451 - +0.6
6,220,475 + -0.2
6,220,549 + -0.0
6,220,549 + +0.6
6,220,549 + -0.2
6,220,549 + -0.2
6,220,550 - -0.9
6,220,550 - -0.8
6,220,550 - +0.2
6,220,550 - -0.3
6,220,609 - AO356_27295 0.10 +0.8
6,220,732 + AO356_27295 0.20 -0.4
6,220,732 + AO356_27295 0.20 -0.2
6,220,733 - AO356_27295 0.20 +0.1
6,220,733 - AO356_27295 0.20 +0.9
6,220,733 - AO356_27295 0.20 +0.5
6,220,830 + AO356_27295 0.28 +0.3
6,220,830 + AO356_27295 0.28 -0.3
6,220,831 - AO356_27295 0.28 +0.3
6,220,893 + AO356_27295 0.33 -0.6
6,220,894 - AO356_27295 0.33 -0.1
6,220,894 - AO356_27295 0.33 +0.4
6,221,104 - AO356_27295 0.49 +0.0
6,221,109 + AO356_27295 0.50 +0.5
6,221,109 + AO356_27295 0.50 +0.2
6,221,177 + AO356_27295 0.55 -1.2
6,221,178 - AO356_27295 0.55 -1.0
6,221,178 - AO356_27295 0.55 +0.2
6,221,178 - AO356_27295 0.55 -0.5

Or see this region's nucleotide sequence