Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24370

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24360 and AO356_24365 are separated by 18 nucleotidesAO356_24365 and AO356_24370 overlap by 4 nucleotidesAO356_24370 and AO356_24375 overlap by 4 nucleotides AO356_24360: AO356_24360 - type VI secretion protein, at 5,497,566 to 5,498,897 _24360 AO356_24365: AO356_24365 - type VI secretion system protein ImpK, at 5,498,916 to 5,499,680 _24365 AO356_24370: AO356_24370 - type VI secretion system protein ImpL, at 5,499,677 to 5,503,501 _24370 AO356_24375: AO356_24375 - type VI secretion protein, at 5,503,498 to 5,504,574 _24375 Position (kb) 5499 5500 5501 5502 5503 5504Strain fitness (log2 ratio) -2 -1 0 1at 5498.739 kb on + strand, within AO356_24360at 5498.739 kb on + strand, within AO356_24360at 5498.916 kb on - strandat 5499.154 kb on - strand, within AO356_24365at 5499.154 kb on - strand, within AO356_24365at 5499.246 kb on + strand, within AO356_24365at 5499.246 kb on + strand, within AO356_24365at 5499.246 kb on + strand, within AO356_24365at 5499.246 kb on + strand, within AO356_24365at 5499.247 kb on - strand, within AO356_24365at 5499.247 kb on - strand, within AO356_24365at 5499.456 kb on + strand, within AO356_24365at 5499.457 kb on - strand, within AO356_24365at 5499.706 kb on - strandat 5499.706 kb on - strandat 5499.791 kb on + strandat 5499.791 kb on + strandat 5500.208 kb on + strand, within AO356_24370at 5500.209 kb on - strand, within AO356_24370at 5500.209 kb on - strand, within AO356_24370at 5500.209 kb on - strand, within AO356_24370at 5500.209 kb on - strand, within AO356_24370at 5500.311 kb on - strand, within AO356_24370at 5500.434 kb on - strand, within AO356_24370at 5500.541 kb on + strand, within AO356_24370at 5500.541 kb on + strand, within AO356_24370at 5500.542 kb on - strand, within AO356_24370at 5500.542 kb on - strand, within AO356_24370at 5500.831 kb on + strand, within AO356_24370at 5500.832 kb on - strand, within AO356_24370at 5500.899 kb on - strand, within AO356_24370at 5501.135 kb on + strand, within AO356_24370at 5501.136 kb on - strand, within AO356_24370at 5501.136 kb on - strand, within AO356_24370at 5501.307 kb on - strand, within AO356_24370at 5501.332 kb on + strand, within AO356_24370at 5501.333 kb on - strand, within AO356_24370at 5501.423 kb on + strand, within AO356_24370at 5501.424 kb on - strand, within AO356_24370at 5501.424 kb on - strand, within AO356_24370at 5501.424 kb on - strand, within AO356_24370at 5501.940 kb on - strand, within AO356_24370at 5501.951 kb on + strand, within AO356_24370at 5501.960 kb on + strand, within AO356_24370at 5501.960 kb on + strand, within AO356_24370at 5501.960 kb on + strand, within AO356_24370at 5501.960 kb on + strand, within AO356_24370at 5501.960 kb on + strand, within AO356_24370at 5501.961 kb on - strand, within AO356_24370at 5501.961 kb on - strand, within AO356_24370at 5501.976 kb on + strand, within AO356_24370at 5501.977 kb on - strand, within AO356_24370at 5501.977 kb on - strand, within AO356_24370at 5502.099 kb on + strand, within AO356_24370at 5502.099 kb on + strand, within AO356_24370at 5502.306 kb on - strand, within AO356_24370at 5502.488 kb on + strand, within AO356_24370at 5502.671 kb on + strand, within AO356_24370at 5502.720 kb on - strand, within AO356_24370at 5502.720 kb on - strand, within AO356_24370at 5502.720 kb on - strand, within AO356_24370at 5502.732 kb on - strand, within AO356_24370at 5503.214 kb on + strandat 5503.286 kb on + strandat 5503.287 kb on - strandat 5503.287 kb on - strandat 5503.287 kb on - strandat 5503.918 kb on + strand, within AO356_24375at 5504.021 kb on + strand, within AO356_24375at 5504.021 kb on + strand, within AO356_24375at 5504.022 kb on - strand, within AO356_24375at 5504.022 kb on - strand, within AO356_24375at 5504.219 kb on - strand, within AO356_24375at 5504.262 kb on - strand, within AO356_24375

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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5,498,739 + AO356_24360 0.88 -0.3
5,498,739 + AO356_24360 0.88 -0.2
5,498,916 - +0.8
5,499,154 - AO356_24365 0.31 +0.2
5,499,154 - AO356_24365 0.31 -0.6
5,499,246 + AO356_24365 0.43 -1.3
5,499,246 + AO356_24365 0.43 +0.5
5,499,246 + AO356_24365 0.43 -0.5
5,499,246 + AO356_24365 0.43 -1.0
5,499,247 - AO356_24365 0.43 +0.6
5,499,247 - AO356_24365 0.43 +0.3
5,499,456 + AO356_24365 0.71 +0.2
5,499,457 - AO356_24365 0.71 +0.4
5,499,706 - +0.2
5,499,706 - +0.6
5,499,791 + +0.0
5,499,791 + -1.8
5,500,208 + AO356_24370 0.14 -0.6
5,500,209 - AO356_24370 0.14 +1.2
5,500,209 - AO356_24370 0.14 -0.1
5,500,209 - AO356_24370 0.14 +0.0
5,500,209 - AO356_24370 0.14 +0.0
5,500,311 - AO356_24370 0.17 +0.5
5,500,434 - AO356_24370 0.20 +0.5
5,500,541 + AO356_24370 0.23 +0.6
5,500,541 + AO356_24370 0.23 +0.2
5,500,542 - AO356_24370 0.23 +0.2
5,500,542 - AO356_24370 0.23 +0.2
5,500,831 + AO356_24370 0.30 -0.5
5,500,832 - AO356_24370 0.30 -0.8
5,500,899 - AO356_24370 0.32 -0.8
5,501,135 + AO356_24370 0.38 -0.7
5,501,136 - AO356_24370 0.38 +0.8
5,501,136 - AO356_24370 0.38 -0.3
5,501,307 - AO356_24370 0.43 +0.4
5,501,332 + AO356_24370 0.43 -0.0
5,501,333 - AO356_24370 0.43 -0.7
5,501,423 + AO356_24370 0.46 +0.0
5,501,424 - AO356_24370 0.46 +0.5
5,501,424 - AO356_24370 0.46 -0.0
5,501,424 - AO356_24370 0.46 +0.4
5,501,940 - AO356_24370 0.59 -0.1
5,501,951 + AO356_24370 0.59 -0.8
5,501,960 + AO356_24370 0.60 -0.9
5,501,960 + AO356_24370 0.60 -0.8
5,501,960 + AO356_24370 0.60 -0.5
5,501,960 + AO356_24370 0.60 -0.2
5,501,960 + AO356_24370 0.60 -1.4
5,501,961 - AO356_24370 0.60 -1.3
5,501,961 - AO356_24370 0.60 -0.1
5,501,976 + AO356_24370 0.60 -0.2
5,501,977 - AO356_24370 0.60 +0.2
5,501,977 - AO356_24370 0.60 +0.7
5,502,099 + AO356_24370 0.63 -2.3
5,502,099 + AO356_24370 0.63 -0.2
5,502,306 - AO356_24370 0.69 +0.6
5,502,488 + AO356_24370 0.73 +0.4
5,502,671 + AO356_24370 0.78 +0.0
5,502,720 - AO356_24370 0.80 +0.1
5,502,720 - AO356_24370 0.80 -0.1
5,502,720 - AO356_24370 0.80 +1.0
5,502,732 - AO356_24370 0.80 +0.7
5,503,214 + +0.2
5,503,286 + -1.2
5,503,287 - -0.0
5,503,287 - -1.3
5,503,287 - -0.7
5,503,918 + AO356_24375 0.39 -1.6
5,504,021 + AO356_24375 0.49 -0.1
5,504,021 + AO356_24375 0.49 -0.5
5,504,022 - AO356_24375 0.49 +1.3
5,504,022 - AO356_24375 0.49 -0.7
5,504,219 - AO356_24375 0.67 -0.6
5,504,262 - AO356_24375 0.71 -0.7

Or see this region's nucleotide sequence