Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23980

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23970 and AO356_23975 overlap by 4 nucleotidesAO356_23975 and AO356_23980 are separated by 257 nucleotidesAO356_23980 and AO356_23985 are separated by 36 nucleotides AO356_23970: AO356_23970 - histidine kinase, at 5,374,442 to 5,376,625 _23970 AO356_23975: AO356_23975 - chemotaxis protein CheY, at 5,376,622 to 5,377,023 _23975 AO356_23980: AO356_23980 - HIT family hydrolase, at 5,377,281 to 5,377,724 _23980 AO356_23985: AO356_23985 - LysR family transcriptional regulator, at 5,377,761 to 5,378,618 _23985 Position (kb) 5377 5378Strain fitness (log2 ratio) -1 0 1at 5376.414 kb on - strandat 5376.566 kb on + strandat 5377.125 kb on - strandat 5377.148 kb on - strandat 5377.205 kb on + strandat 5377.231 kb on + strandat 5377.232 kb on - strandat 5377.232 kb on - strandat 5377.300 kb on - strandat 5377.300 kb on - strandat 5377.300 kb on - strandat 5377.359 kb on + strand, within AO356_23980at 5377.499 kb on - strand, within AO356_23980at 5377.799 kb on - strandat 5377.849 kb on + strand, within AO356_23985at 5377.849 kb on + strand, within AO356_23985at 5377.849 kb on + strand, within AO356_23985at 5377.850 kb on - strand, within AO356_23985at 5377.850 kb on - strand, within AO356_23985at 5377.850 kb on - strand, within AO356_23985at 5377.923 kb on - strand, within AO356_23985at 5377.990 kb on + strand, within AO356_23985at 5377.991 kb on - strand, within AO356_23985at 5378.047 kb on + strand, within AO356_23985at 5378.047 kb on + strand, within AO356_23985at 5378.105 kb on - strand, within AO356_23985

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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5,376,414 - -0.5
5,376,566 + +0.7
5,377,125 - +0.1
5,377,148 - -0.3
5,377,205 + +1.4
5,377,231 + -0.4
5,377,232 - +0.5
5,377,232 - -0.1
5,377,300 - +0.5
5,377,300 - +0.4
5,377,300 - -0.0
5,377,359 + AO356_23980 0.18 -0.5
5,377,499 - AO356_23980 0.49 -0.8
5,377,799 - -0.3
5,377,849 + AO356_23985 0.10 -0.6
5,377,849 + AO356_23985 0.10 +0.4
5,377,849 + AO356_23985 0.10 -0.4
5,377,850 - AO356_23985 0.10 -1.4
5,377,850 - AO356_23985 0.10 -1.1
5,377,850 - AO356_23985 0.10 +0.5
5,377,923 - AO356_23985 0.19 +0.9
5,377,990 + AO356_23985 0.27 +1.5
5,377,991 - AO356_23985 0.27 +1.1
5,378,047 + AO356_23985 0.33 +0.5
5,378,047 + AO356_23985 0.33 +0.5
5,378,105 - AO356_23985 0.40 -0.2

Or see this region's nucleotide sequence