Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22665

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22655 and AO356_22660 overlap by 4 nucleotidesAO356_22660 and AO356_22665 are separated by 39 nucleotidesAO356_22665 and AO356_22670 are separated by 33 nucleotides AO356_22655: AO356_22655 - SAM-dependent methyltransferase, at 5,062,288 to 5,063,124 _22655 AO356_22660: AO356_22660 - chemotaxis protein CheW, at 5,063,121 to 5,063,657 _22660 AO356_22665: AO356_22665 - chemotaxis protein, at 5,063,697 to 5,065,355 _22665 AO356_22670: AO356_22670 - chemotaxis protein CheA, at 5,065,389 to 5,067,491 _22670 Position (kb) 5063 5064 5065 5066Strain fitness (log2 ratio) -3 -2 -1 0 1at 5062.741 kb on - strand, within AO356_22655at 5062.741 kb on - strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.742 kb on + strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.743 kb on - strand, within AO356_22655at 5062.813 kb on + strand, within AO356_22655at 5062.813 kb on + strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.814 kb on - strand, within AO356_22655at 5062.897 kb on + strand, within AO356_22655at 5062.897 kb on + strand, within AO356_22655at 5062.898 kb on - strand, within AO356_22655at 5062.898 kb on - strand, within AO356_22655at 5062.937 kb on + strand, within AO356_22655at 5062.938 kb on - strand, within AO356_22655at 5063.113 kb on - strandat 5063.113 kb on - strandat 5063.588 kb on + strand, within AO356_22660at 5063.589 kb on - strand, within AO356_22660at 5063.599 kb on + strand, within AO356_22660at 5063.599 kb on + strand, within AO356_22660at 5063.599 kb on + strand, within AO356_22660at 5063.600 kb on - strand, within AO356_22660at 5063.600 kb on - strand, within AO356_22660at 5063.600 kb on - strand, within AO356_22660at 5063.672 kb on + strandat 5063.673 kb on - strandat 5063.673 kb on - strandat 5063.744 kb on - strandat 5063.866 kb on + strand, within AO356_22665at 5064.552 kb on - strand, within AO356_22665at 5064.979 kb on + strand, within AO356_22665at 5064.980 kb on - strand, within AO356_22665at 5065.049 kb on - strand, within AO356_22665at 5065.049 kb on - strand, within AO356_22665at 5065.334 kb on + strandat 5065.334 kb on + strandat 5065.335 kb on - strandat 5065.335 kb on - strandat 5065.335 kb on - strandat 5065.335 kb on - strandat 5065.342 kb on + strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.343 kb on - strandat 5065.363 kb on + strandat 5065.363 kb on + strandat 5065.363 kb on + strandat 5065.363 kb on + strandat 5065.364 kb on - strandat 5065.364 kb on - strandat 5065.364 kb on - strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.382 kb on + strandat 5065.410 kb on + strandat 5065.410 kb on + strandat 5065.410 kb on + strandat 5065.411 kb on - strandat 5065.411 kb on - strandat 5065.411 kb on - strandat 5065.411 kb on - strandat 5065.468 kb on - strandat 5065.766 kb on + strand, within AO356_22670at 5065.767 kb on - strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.798 kb on + strand, within AO356_22670at 5065.799 kb on - strand, within AO356_22670at 5066.017 kb on + strand, within AO356_22670at 5066.018 kb on - strand, within AO356_22670at 5066.018 kb on - strand, within AO356_22670at 5066.150 kb on - strand, within AO356_22670at 5066.150 kb on - strand, within AO356_22670at 5066.214 kb on + strand, within AO356_22670at 5066.215 kb on - strand, within AO356_22670at 5066.215 kb on - strand, within AO356_22670

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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5,062,741 - AO356_22655 0.54 +0.8
5,062,741 - AO356_22655 0.54 +0.2
5,062,742 + AO356_22655 0.54 +0.3
5,062,742 + AO356_22655 0.54 +0.4
5,062,742 + AO356_22655 0.54 -0.6
5,062,743 - AO356_22655 0.54 +1.1
5,062,743 - AO356_22655 0.54 -0.6
5,062,743 - AO356_22655 0.54 +0.5
5,062,813 + AO356_22655 0.63 +0.8
5,062,813 + AO356_22655 0.63 -0.3
5,062,814 - AO356_22655 0.63 +1.5
5,062,814 - AO356_22655 0.63 +0.1
5,062,814 - AO356_22655 0.63 -0.9
5,062,814 - AO356_22655 0.63 +0.6
5,062,897 + AO356_22655 0.73 +0.7
5,062,897 + AO356_22655 0.73 +0.4
5,062,898 - AO356_22655 0.73 -0.3
5,062,898 - AO356_22655 0.73 +0.5
5,062,937 + AO356_22655 0.78 +0.7
5,062,938 - AO356_22655 0.78 +1.3
5,063,113 - -0.1
5,063,113 - +0.5
5,063,588 + AO356_22660 0.87 -0.1
5,063,589 - AO356_22660 0.87 -1.0
5,063,599 + AO356_22660 0.89 +0.2
5,063,599 + AO356_22660 0.89 -0.2
5,063,599 + AO356_22660 0.89 +0.1
5,063,600 - AO356_22660 0.89 +0.5
5,063,600 - AO356_22660 0.89 +0.2
5,063,600 - AO356_22660 0.89 +0.6
5,063,672 + -0.2
5,063,673 - -0.3
5,063,673 - -0.2
5,063,744 - +0.6
5,063,866 + AO356_22665 0.10 -1.1
5,064,552 - AO356_22665 0.52 -0.1
5,064,979 + AO356_22665 0.77 -0.1
5,064,980 - AO356_22665 0.77 -3.2
5,065,049 - AO356_22665 0.81 -1.4
5,065,049 - AO356_22665 0.81 +0.2
5,065,334 + +0.1
5,065,334 + +0.7
5,065,335 - -0.1
5,065,335 - +0.1
5,065,335 - -0.1
5,065,335 - +0.5
5,065,342 + +0.4
5,065,343 - +0.4
5,065,343 - -0.5
5,065,343 - +0.5
5,065,343 - -0.4
5,065,343 - -0.3
5,065,363 + +0.3
5,065,363 + -0.8
5,065,363 + +0.3
5,065,363 + -0.1
5,065,364 - -0.7
5,065,364 - -0.5
5,065,364 - -0.3
5,065,382 + +0.1
5,065,382 + +0.4
5,065,382 + -0.3
5,065,382 + -0.0
5,065,382 + +0.6
5,065,410 + -0.5
5,065,410 + -0.0
5,065,410 + -0.2
5,065,411 - +0.4
5,065,411 - -0.8
5,065,411 - -1.4
5,065,411 - +0.8
5,065,468 - -0.5
5,065,766 + AO356_22670 0.18 +0.3
5,065,767 - AO356_22670 0.18 -0.8
5,065,798 + AO356_22670 0.19 -0.1
5,065,798 + AO356_22670 0.19 +0.1
5,065,798 + AO356_22670 0.19 -0.4
5,065,798 + AO356_22670 0.19 -0.3
5,065,798 + AO356_22670 0.19 -0.0
5,065,798 + AO356_22670 0.19 +0.1
5,065,799 - AO356_22670 0.19 +1.1
5,066,017 + AO356_22670 0.30 +0.9
5,066,018 - AO356_22670 0.30 +1.0
5,066,018 - AO356_22670 0.30 -0.7
5,066,150 - AO356_22670 0.36 +1.2
5,066,150 - AO356_22670 0.36 -0.8
5,066,214 + AO356_22670 0.39 +0.9
5,066,215 - AO356_22670 0.39 +0.4
5,066,215 - AO356_22670 0.39 -0.2

Or see this region's nucleotide sequence