Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21510

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21500 and AO356_21505 are separated by 82 nucleotidesAO356_21505 and AO356_21510 are separated by 39 nucleotidesAO356_21510 and AO356_21515 overlap by 11 nucleotidesAO356_21515 and AO356_21520 are separated by 636 nucleotides AO356_21500: AO356_21500 - tRNA-Val, at 4,818,649 to 4,818,725 _21500 AO356_21505: AO356_21505 - hypothetical protein, at 4,818,808 to 4,819,452 _21505 AO356_21510: AO356_21510 - addiction module toxin RelE, at 4,819,492 to 4,819,809 _21510 AO356_21515: AO356_21515 - antitoxin, at 4,819,799 to 4,820,086 _21515 AO356_21520: AO356_21520 - hypothetical protein, at 4,820,723 to 4,821,247 _21520 Position (kb) 4819 4820Strain fitness (log2 ratio) -2 -1 0 1 2at 4818.516 kb on + strandat 4818.517 kb on - strandat 4818.517 kb on - strandat 4818.591 kb on + strandat 4818.656 kb on + strandat 4818.656 kb on + strandat 4818.752 kb on + strandat 4818.752 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.827 kb on + strandat 4818.840 kb on + strandat 4818.840 kb on + strandat 4818.840 kb on + strandat 4818.840 kb on + strandat 4818.841 kb on - strandat 4818.841 kb on - strandat 4818.842 kb on + strandat 4818.843 kb on - strandat 4818.866 kb on + strandat 4818.866 kb on + strandat 4818.867 kb on - strandat 4818.867 kb on - strandat 4818.881 kb on - strand, within AO356_21505at 4818.892 kb on - strand, within AO356_21505at 4818.892 kb on - strand, within AO356_21505at 4818.943 kb on + strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.952 kb on - strand, within AO356_21505at 4818.952 kb on - strand, within AO356_21505at 4818.987 kb on + strand, within AO356_21505at 4818.987 kb on + strand, within AO356_21505at 4818.987 kb on + strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4819.024 kb on - strand, within AO356_21505at 4819.102 kb on - strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.142 kb on - strand, within AO356_21505at 4819.142 kb on - strand, within AO356_21505at 4819.142 kb on - strand, within AO356_21505at 4819.162 kb on + strand, within AO356_21505at 4819.234 kb on + strand, within AO356_21505at 4819.288 kb on + strand, within AO356_21505at 4819.344 kb on + strand, within AO356_21505at 4819.344 kb on + strand, within AO356_21505at 4819.345 kb on - strand, within AO356_21505at 4819.345 kb on - strand, within AO356_21505at 4819.345 kb on - strand, within AO356_21505at 4819.372 kb on - strand, within AO356_21505at 4819.387 kb on - strand, within AO356_21505at 4819.387 kb on - strand, within AO356_21505at 4819.444 kb on - strandat 4819.444 kb on - strandat 4819.488 kb on + strandat 4819.488 kb on + strandat 4819.488 kb on + strandat 4819.488 kb on + strandat 4819.488 kb on + strandat 4819.488 kb on + strandat 4819.489 kb on - strandat 4819.489 kb on - strandat 4819.489 kb on - strandat 4819.489 kb on - strandat 4819.489 kb on - strandat 4819.489 kb on - strandat 4819.493 kb on + strandat 4819.493 kb on + strandat 4819.494 kb on - strandat 4819.545 kb on - strand, within AO356_21510at 4819.613 kb on + strand, within AO356_21510at 4819.652 kb on + strand, within AO356_21510at 4819.652 kb on + strand, within AO356_21510at 4819.653 kb on - strand, within AO356_21510at 4819.796 kb on + strandat 4819.817 kb on - strandat 4819.853 kb on + strand, within AO356_21515at 4819.941 kb on + strand, within AO356_21515at 4820.219 kb on + strandat 4820.219 kb on + strandat 4820.219 kb on + strandat 4820.219 kb on + strandat 4820.219 kb on + strandat 4820.220 kb on - strandat 4820.220 kb on - strandat 4820.220 kb on - strandat 4820.276 kb on + strandat 4820.277 kb on - strandat 4820.499 kb on + strandat 4820.556 kb on + strandat 4820.557 kb on - strandat 4820.566 kb on + strandat 4820.636 kb on + strandat 4820.636 kb on + strandat 4820.636 kb on + strandat 4820.637 kb on - strandat 4820.637 kb on - strandat 4820.639 kb on + strandat 4820.639 kb on + strandat 4820.640 kb on - strandat 4820.640 kb on - strandat 4820.640 kb on - strandat 4820.640 kb on - strandat 4820.656 kb on + strandat 4820.657 kb on - strandat 4820.657 kb on - strandat 4820.659 kb on - strandat 4820.711 kb on - strandat 4820.719 kb on - strandat 4820.733 kb on + strandat 4820.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,818,516 + +0.5
4,818,517 - +0.2
4,818,517 - +0.2
4,818,591 + +0.2
4,818,656 + +0.5
4,818,656 + -1.9
4,818,752 + +0.1
4,818,752 + +0.3
4,818,795 + +0.1
4,818,795 + -0.7
4,818,795 + +0.6
4,818,795 + +0.8
4,818,795 + +0.9
4,818,795 + +0.2
4,818,795 + +1.2
4,818,795 + +1.5
4,818,796 - -0.8
4,818,796 - -0.0
4,818,796 - +0.3
4,818,796 - -0.5
4,818,796 - +0.3
4,818,796 - +0.6
4,818,827 + -0.9
4,818,840 + +0.3
4,818,840 + +0.2
4,818,840 + -0.8
4,818,840 + +0.0
4,818,841 - -0.5
4,818,841 - -0.7
4,818,842 + +0.1
4,818,843 - +0.5
4,818,866 + -0.5
4,818,866 + -0.4
4,818,867 - +0.5
4,818,867 - +0.3
4,818,881 - AO356_21505 0.11 -1.3
4,818,892 - AO356_21505 0.13 +1.7
4,818,892 - AO356_21505 0.13 +0.4
4,818,943 + AO356_21505 0.21 -0.5
4,818,944 - AO356_21505 0.21 -0.7
4,818,944 - AO356_21505 0.21 +0.6
4,818,944 - AO356_21505 0.21 -0.4
4,818,944 - AO356_21505 0.21 -0.6
4,818,951 + AO356_21505 0.22 +0.1
4,818,951 + AO356_21505 0.22 +1.1
4,818,951 + AO356_21505 0.22 -0.1
4,818,951 + AO356_21505 0.22 -2.0
4,818,951 + AO356_21505 0.22 +0.1
4,818,952 - AO356_21505 0.22 +1.6
4,818,952 - AO356_21505 0.22 +0.7
4,818,987 + AO356_21505 0.28 -0.1
4,818,987 + AO356_21505 0.28 -0.9
4,818,987 + AO356_21505 0.28 -0.0
4,818,988 - AO356_21505 0.28 -0.5
4,818,988 - AO356_21505 0.28 -1.0
4,818,988 - AO356_21505 0.28 +0.5
4,818,988 - AO356_21505 0.28 -0.5
4,818,988 - AO356_21505 0.28 -0.4
4,819,024 - AO356_21505 0.33 -0.4
4,819,102 - AO356_21505 0.46 +0.8
4,819,141 + AO356_21505 0.52 +0.2
4,819,141 + AO356_21505 0.52 -0.2
4,819,141 + AO356_21505 0.52 +1.3
4,819,141 + AO356_21505 0.52 +0.2
4,819,142 - AO356_21505 0.52 +0.1
4,819,142 - AO356_21505 0.52 -0.6
4,819,142 - AO356_21505 0.52 +2.4
4,819,162 + AO356_21505 0.55 -0.7
4,819,234 + AO356_21505 0.66 +0.4
4,819,288 + AO356_21505 0.74 -0.1
4,819,344 + AO356_21505 0.83 +0.4
4,819,344 + AO356_21505 0.83 -0.3
4,819,345 - AO356_21505 0.83 -0.3
4,819,345 - AO356_21505 0.83 +0.6
4,819,345 - AO356_21505 0.83 -0.3
4,819,372 - AO356_21505 0.87 +0.5
4,819,387 - AO356_21505 0.90 +0.7
4,819,387 - AO356_21505 0.90 -0.5
4,819,444 - +0.6
4,819,444 - +0.9
4,819,488 + +1.3
4,819,488 + +0.5
4,819,488 + +0.1
4,819,488 + +2.2
4,819,488 + +0.8
4,819,488 + -0.5
4,819,489 - -0.3
4,819,489 - +0.3
4,819,489 - -0.2
4,819,489 - -0.8
4,819,489 - -0.0
4,819,489 - +1.2
4,819,493 + +0.6
4,819,493 + -1.3
4,819,494 - +0.2
4,819,545 - AO356_21510 0.17 -0.5
4,819,613 + AO356_21510 0.38 -0.4
4,819,652 + AO356_21510 0.50 -0.5
4,819,652 + AO356_21510 0.50 -0.3
4,819,653 - AO356_21510 0.51 -1.4
4,819,796 + +0.1
4,819,817 - +1.4
4,819,853 + AO356_21515 0.19 -1.2
4,819,941 + AO356_21515 0.49 +1.4
4,820,219 + -1.0
4,820,219 + +0.2
4,820,219 + +0.2
4,820,219 + -1.7
4,820,219 + -1.2
4,820,220 - -0.4
4,820,220 - -1.1
4,820,220 - -1.5
4,820,276 + +0.2
4,820,277 - -0.6
4,820,499 + +0.0
4,820,556 + -0.6
4,820,557 - +0.8
4,820,566 + +0.5
4,820,636 + +0.4
4,820,636 + +0.2
4,820,636 + -0.3
4,820,637 - -0.4
4,820,637 - -1.7
4,820,639 + -0.8
4,820,639 + +0.8
4,820,640 - -1.8
4,820,640 - -1.2
4,820,640 - -0.9
4,820,640 - -0.8
4,820,656 + +0.6
4,820,657 - -0.3
4,820,657 - +0.1
4,820,659 - -0.1
4,820,711 - -0.8
4,820,719 - +0.3
4,820,733 + -1.8
4,820,734 - -1.3

Or see this region's nucleotide sequence