Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21380

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21370 and AO356_21375 are separated by 85 nucleotidesAO356_21375 and AO356_21380 are separated by 382 nucleotidesAO356_21380 and AO356_21385 are separated by 119 nucleotidesAO356_21385 and AO356_21390 are separated by 62 nucleotides AO356_21370: AO356_21370 - hydrolase, at 4,790,183 to 4,791,016 _21370 AO356_21375: AO356_21375 - 4-hydroxybenzoyl-CoA thioesterase, at 4,791,102 to 4,791,551 _21375 AO356_21380: AO356_21380 - tRNA-dihydrouridine synthase C, at 4,791,934 to 4,792,893 _21380 AO356_21385: AO356_21385 - heat-shock protein, at 4,793,013 to 4,793,465 _21385 AO356_21390: AO356_21390 - histidine kinase, at 4,793,528 to 4,796,806 _21390 Position (kb) 4791 4792 4793Strain fitness (log2 ratio) -1 0 1 2at 4790.970 kb on + strandat 4791.055 kb on + strandat 4791.055 kb on + strandat 4791.055 kb on + strandat 4791.055 kb on + strandat 4791.056 kb on - strandat 4791.190 kb on + strand, within AO356_21375at 4791.192 kb on + strand, within AO356_21375at 4791.192 kb on + strand, within AO356_21375at 4791.192 kb on + strand, within AO356_21375at 4791.192 kb on + strand, within AO356_21375at 4791.193 kb on - strand, within AO356_21375at 4791.193 kb on - strand, within AO356_21375at 4791.193 kb on - strand, within AO356_21375at 4791.193 kb on - strand, within AO356_21375at 4791.193 kb on - strand, within AO356_21375at 4791.259 kb on - strand, within AO356_21375at 4791.306 kb on + strand, within AO356_21375at 4791.321 kb on + strand, within AO356_21375at 4791.322 kb on - strand, within AO356_21375at 4791.603 kb on + strandat 4791.603 kb on + strandat 4791.603 kb on + strandat 4791.604 kb on - strandat 4791.604 kb on - strandat 4791.604 kb on - strandat 4791.604 kb on - strandat 4791.789 kb on - strandat 4791.797 kb on + strandat 4792.066 kb on + strand, within AO356_21380at 4792.067 kb on - strand, within AO356_21380at 4792.067 kb on - strand, within AO356_21380at 4792.074 kb on + strand, within AO356_21380at 4792.074 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.460 kb on - strand, within AO356_21380at 4792.862 kb on + strandat 4792.862 kb on + strandat 4792.863 kb on - strandat 4792.863 kb on - strandat 4792.863 kb on - strandat 4792.936 kb on + strandat 4792.936 kb on + strandat 4792.936 kb on + strandat 4792.941 kb on - strandat 4792.941 kb on - strandat 4792.941 kb on - strandat 4793.018 kb on + strandat 4793.018 kb on + strandat 4793.057 kb on - strandat 4793.118 kb on + strand, within AO356_21385at 4793.118 kb on + strand, within AO356_21385at 4793.118 kb on + strand, within AO356_21385at 4793.119 kb on - strand, within AO356_21385at 4793.119 kb on - strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.333 kb on + strand, within AO356_21385at 4793.492 kb on + strandat 4793.492 kb on + strandat 4793.509 kb on + strandat 4793.581 kb on - strandat 4793.589 kb on + strandat 4793.590 kb on - strandat 4793.657 kb on + strandat 4793.784 kb on + strandat 4793.785 kb on - strandat 4793.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,790,970 + +1.0
4,791,055 + -0.5
4,791,055 + -0.8
4,791,055 + +1.3
4,791,055 + -0.2
4,791,056 - -0.4
4,791,190 + AO356_21375 0.20 +0.1
4,791,192 + AO356_21375 0.20 -0.2
4,791,192 + AO356_21375 0.20 +0.9
4,791,192 + AO356_21375 0.20 -1.3
4,791,192 + AO356_21375 0.20 -0.3
4,791,193 - AO356_21375 0.20 -0.3
4,791,193 - AO356_21375 0.20 +0.4
4,791,193 - AO356_21375 0.20 +0.4
4,791,193 - AO356_21375 0.20 +0.5
4,791,193 - AO356_21375 0.20 +0.6
4,791,259 - AO356_21375 0.35 +0.8
4,791,306 + AO356_21375 0.45 +0.6
4,791,321 + AO356_21375 0.49 +0.3
4,791,322 - AO356_21375 0.49 +0.8
4,791,603 + +0.2
4,791,603 + -0.1
4,791,603 + -0.4
4,791,604 - +0.5
4,791,604 - -0.6
4,791,604 - +0.1
4,791,604 - -0.4
4,791,789 - -0.1
4,791,797 + +0.4
4,792,066 + AO356_21380 0.14 +0.5
4,792,067 - AO356_21380 0.14 -0.3
4,792,067 - AO356_21380 0.14 +0.5
4,792,074 + AO356_21380 0.15 -0.6
4,792,074 + AO356_21380 0.15 +0.1
4,792,459 + AO356_21380 0.55 -1.0
4,792,459 + AO356_21380 0.55 +0.1
4,792,459 + AO356_21380 0.55 +0.3
4,792,459 + AO356_21380 0.55 +1.4
4,792,460 - AO356_21380 0.55 -0.5
4,792,862 + +0.7
4,792,862 + +0.0
4,792,863 - +0.5
4,792,863 - +0.1
4,792,863 - -1.0
4,792,936 + -0.0
4,792,936 + -0.3
4,792,936 + -0.2
4,792,941 - -0.6
4,792,941 - +0.3
4,792,941 - -0.0
4,793,018 + -0.0
4,793,018 + +0.4
4,793,057 - +2.2
4,793,118 + AO356_21385 0.23 -0.5
4,793,118 + AO356_21385 0.23 -0.6
4,793,118 + AO356_21385 0.23 +0.1
4,793,119 - AO356_21385 0.23 +1.4
4,793,119 - AO356_21385 0.23 +0.1
4,793,127 + AO356_21385 0.25 -1.0
4,793,127 + AO356_21385 0.25 +0.2
4,793,127 + AO356_21385 0.25 +1.6
4,793,128 - AO356_21385 0.25 -0.4
4,793,128 - AO356_21385 0.25 +1.0
4,793,128 - AO356_21385 0.25 +0.2
4,793,128 - AO356_21385 0.25 +1.1
4,793,333 + AO356_21385 0.71 -0.9
4,793,492 + +0.4
4,793,492 + -0.5
4,793,509 + +1.1
4,793,581 - -1.1
4,793,589 + -0.4
4,793,590 - +1.3
4,793,657 + +0.4
4,793,784 + +0.5
4,793,785 - +1.4
4,793,785 - +1.1

Or see this region's nucleotide sequence