Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20340 and AO356_20345 are separated by 200 nucleotides AO356_20345 and AO356_20350 are separated by 85 nucleotides AO356_20350 and AO356_20355 are separated by 149 nucleotides
AO356_20340: AO356_20340 - hypothetical protein, at 4,544,162 to 4,544,971
_20340
AO356_20345: AO356_20345 - GntR family transcriptional regulator, at 4,545,172 to 4,546,614
_20345
AO356_20350: AO356_20350 - translation initiation factor 2, at 4,546,700 to 4,547,179
_20350
AO356_20355: AO356_20355 - hypothetical protein, at 4,547,329 to 4,547,583
_20355
Position (kb) 4545
4546
4547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4544.178 kb on + strand at 4544.178 kb on + strand at 4544.179 kb on - strand at 4544.179 kb on - strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.216 kb on + strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.217 kb on - strand at 4544.298 kb on + strand, within AO356_20340 at 4544.298 kb on + strand, within AO356_20340 at 4544.370 kb on - strand, within AO356_20340 at 4544.399 kb on + strand, within AO356_20340 at 4544.399 kb on + strand, within AO356_20340 at 4544.400 kb on - strand, within AO356_20340 at 4544.405 kb on + strand, within AO356_20340 at 4544.405 kb on + strand, within AO356_20340 at 4544.406 kb on - strand, within AO356_20340 at 4544.421 kb on - strand, within AO356_20340 at 4544.729 kb on - strand, within AO356_20340 at 4544.738 kb on + strand, within AO356_20340 at 4544.738 kb on + strand, within AO356_20340 at 4544.858 kb on + strand, within AO356_20340 at 4544.859 kb on - strand, within AO356_20340 at 4545.048 kb on + strand at 4545.049 kb on - strand at 4545.054 kb on + strand at 4545.054 kb on + strand at 4545.054 kb on + strand at 4545.054 kb on + strand at 4545.073 kb on + strand at 4545.073 kb on + strand at 4545.073 kb on + strand at 4545.074 kb on - strand at 4545.074 kb on - strand at 4545.074 kb on - strand at 4545.104 kb on - strand at 4545.142 kb on + strand at 4545.190 kb on + strand at 4545.190 kb on + strand at 4545.190 kb on + strand at 4545.191 kb on - strand at 4545.191 kb on - strand at 4545.198 kb on + strand at 4545.199 kb on - strand at 4545.199 kb on - strand at 4545.199 kb on - strand at 4545.199 kb on - strand at 4545.199 kb on - strand at 4545.238 kb on + strand at 4545.238 kb on + strand at 4545.238 kb on + strand at 4545.238 kb on + strand at 4545.238 kb on + strand at 4545.239 kb on - strand at 4545.319 kb on + strand, within AO356_20345 at 4545.319 kb on + strand, within AO356_20345 at 4545.320 kb on - strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.373 kb on + strand, within AO356_20345 at 4545.374 kb on - strand, within AO356_20345 at 4545.374 kb on - strand, within AO356_20345 at 4545.374 kb on - strand, within AO356_20345 at 4545.374 kb on - strand, within AO356_20345 at 4545.532 kb on + strand, within AO356_20345 at 4545.604 kb on + strand, within AO356_20345 at 4545.604 kb on + strand, within AO356_20345 at 4545.604 kb on + strand, within AO356_20345 at 4545.604 kb on + strand, within AO356_20345 at 4545.604 kb on + strand, within AO356_20345 at 4545.605 kb on - strand, within AO356_20345 at 4545.605 kb on - strand, within AO356_20345 at 4545.605 kb on - strand, within AO356_20345 at 4545.605 kb on - strand, within AO356_20345 at 4545.605 kb on - strand, within AO356_20345 at 4545.605 kb on - strand, within AO356_20345 at 4545.784 kb on + strand, within AO356_20345 at 4545.784 kb on + strand, within AO356_20345 at 4545.784 kb on + strand, within AO356_20345 at 4545.784 kb on + strand, within AO356_20345 at 4545.785 kb on - strand, within AO356_20345 at 4545.785 kb on - strand, within AO356_20345 at 4545.915 kb on - strand, within AO356_20345 at 4546.023 kb on + strand, within AO356_20345 at 4546.023 kb on + strand, within AO356_20345 at 4546.023 kb on + strand, within AO356_20345 at 4546.023 kb on + strand, within AO356_20345 at 4546.024 kb on - strand, within AO356_20345 at 4546.024 kb on - strand, within AO356_20345 at 4546.027 kb on + strand, within AO356_20345 at 4546.027 kb on + strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.028 kb on - strand, within AO356_20345 at 4546.075 kb on + strand, within AO356_20345 at 4546.075 kb on + strand, within AO356_20345 at 4546.075 kb on + strand, within AO356_20345 at 4546.099 kb on + strand, within AO356_20345 at 4546.099 kb on + strand, within AO356_20345 at 4546.100 kb on - strand, within AO356_20345 at 4546.100 kb on - strand, within AO356_20345 at 4546.100 kb on - strand, within AO356_20345 at 4546.262 kb on - strand, within AO356_20345 at 4546.279 kb on + strand, within AO356_20345 at 4546.279 kb on + strand, within AO356_20345 at 4546.279 kb on + strand, within AO356_20345 at 4546.280 kb on - strand, within AO356_20345 at 4546.280 kb on - strand, within AO356_20345 at 4546.280 kb on - strand, within AO356_20345 at 4546.282 kb on - strand, within AO356_20345 at 4546.480 kb on - strand at 4546.610 kb on + strand at 4546.610 kb on + strand at 4546.628 kb on - strand at 4546.628 kb on - strand at 4546.699 kb on + strand at 4546.700 kb on - strand at 4546.700 kb on - strand at 4546.700 kb on - strand at 4547.008 kb on + strand, within AO356_20350 at 4547.008 kb on + strand, within AO356_20350 at 4547.008 kb on + strand, within AO356_20350 at 4547.008 kb on + strand, within AO356_20350 at 4547.009 kb on - strand, within AO356_20350 at 4547.009 kb on - strand, within AO356_20350 at 4547.013 kb on + strand, within AO356_20350 at 4547.177 kb on + strand at 4547.178 kb on - strand at 4547.178 kb on - strand at 4547.258 kb on + strand at 4547.280 kb on - strand at 4547.294 kb on + strand at 4547.294 kb on + strand at 4547.295 kb on - strand at 4547.295 kb on - strand at 4547.295 kb on - strand at 4547.304 kb on + strand at 4547.385 kb on + strand, within AO356_20355 at 4547.385 kb on + strand, within AO356_20355 at 4547.385 kb on + strand, within AO356_20355 at 4547.385 kb on + strand, within AO356_20355 at 4547.581 kb on + strand at 4547.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 4,544,178 + -1.1 4,544,178 + +1.5 4,544,179 - +0.4 4,544,179 - +1.3 4,544,216 + +2.0 4,544,216 + +1.0 4,544,216 + -0.5 4,544,216 + +0.5 4,544,216 + -0.5 4,544,216 + +0.4 4,544,216 + +1.0 4,544,216 + +0.9 4,544,217 - +0.7 4,544,217 - +0.9 4,544,217 - -0.2 4,544,217 - +1.5 4,544,217 - -0.4 4,544,217 - +0.3 4,544,217 - -0.1 4,544,217 - -0.8 4,544,217 - +1.0 4,544,217 - +0.6 4,544,298 + AO356_20340 0.17 +0.3 4,544,298 + AO356_20340 0.17 +0.7 4,544,370 - AO356_20340 0.26 -0.1 4,544,399 + AO356_20340 0.29 +1.0 4,544,399 + AO356_20340 0.29 +0.8 4,544,400 - AO356_20340 0.29 -0.3 4,544,405 + AO356_20340 0.30 -0.7 4,544,405 + AO356_20340 0.30 +0.6 4,544,406 - AO356_20340 0.30 +0.5 4,544,421 - AO356_20340 0.32 +1.4 4,544,729 - AO356_20340 0.70 +0.4 4,544,738 + AO356_20340 0.71 +0.7 4,544,738 + AO356_20340 0.71 +0.9 4,544,858 + AO356_20340 0.86 +1.1 4,544,859 - AO356_20340 0.86 +1.2 4,545,048 + -1.2 4,545,049 - +0.3 4,545,054 + -2.9 4,545,054 + -1.3 4,545,054 + -1.2 4,545,054 + -2.6 4,545,073 + -0.0 4,545,073 + -1.4 4,545,073 + -0.9 4,545,074 - +1.0 4,545,074 - +0.3 4,545,074 - +0.7 4,545,104 - +0.3 4,545,142 + -1.4 4,545,190 + -0.7 4,545,190 + +1.3 4,545,190 + +0.6 4,545,191 - +0.9 4,545,191 - +1.7 4,545,198 + +0.4 4,545,199 - +1.6 4,545,199 - +0.9 4,545,199 - +0.5 4,545,199 - -2.1 4,545,199 - +0.2 4,545,238 + +1.3 4,545,238 + +1.0 4,545,238 + +0.9 4,545,238 + +0.9 4,545,238 + +0.9 4,545,239 - -0.2 4,545,319 + AO356_20345 0.10 +1.2 4,545,319 + AO356_20345 0.10 +1.1 4,545,320 - AO356_20345 0.10 +1.2 4,545,373 + AO356_20345 0.14 +1.1 4,545,373 + AO356_20345 0.14 +0.6 4,545,373 + AO356_20345 0.14 +0.2 4,545,373 + AO356_20345 0.14 +0.8 4,545,373 + AO356_20345 0.14 +1.3 4,545,373 + AO356_20345 0.14 +0.5 4,545,373 + AO356_20345 0.14 -0.0 4,545,373 + AO356_20345 0.14 +0.7 4,545,374 - AO356_20345 0.14 -0.2 4,545,374 - AO356_20345 0.14 +0.6 4,545,374 - AO356_20345 0.14 +1.0 4,545,374 - AO356_20345 0.14 +1.2 4,545,532 + AO356_20345 0.25 +1.0 4,545,604 + AO356_20345 0.30 +0.7 4,545,604 + AO356_20345 0.30 +0.6 4,545,604 + AO356_20345 0.30 +1.2 4,545,604 + AO356_20345 0.30 +1.3 4,545,604 + AO356_20345 0.30 +0.2 4,545,605 - AO356_20345 0.30 +0.9 4,545,605 - AO356_20345 0.30 +0.5 4,545,605 - AO356_20345 0.30 +0.1 4,545,605 - AO356_20345 0.30 +0.4 4,545,605 - AO356_20345 0.30 +1.5 4,545,605 - AO356_20345 0.30 +0.7 4,545,784 + AO356_20345 0.42 +0.8 4,545,784 + AO356_20345 0.42 +1.5 4,545,784 + AO356_20345 0.42 -0.6 4,545,784 + AO356_20345 0.42 +1.8 4,545,785 - AO356_20345 0.42 +0.7 4,545,785 - AO356_20345 0.42 +0.5 4,545,915 - AO356_20345 0.51 +0.2 4,546,023 + AO356_20345 0.59 +1.3 4,546,023 + AO356_20345 0.59 +0.9 4,546,023 + AO356_20345 0.59 +0.2 4,546,023 + AO356_20345 0.59 +0.9 4,546,024 - AO356_20345 0.59 +0.8 4,546,024 - AO356_20345 0.59 +0.6 4,546,027 + AO356_20345 0.59 +0.4 4,546,027 + AO356_20345 0.59 +0.1 4,546,028 - AO356_20345 0.59 +1.2 4,546,028 - AO356_20345 0.59 +2.2 4,546,028 - AO356_20345 0.59 -0.2 4,546,028 - AO356_20345 0.59 +1.1 4,546,028 - AO356_20345 0.59 -0.3 4,546,028 - AO356_20345 0.59 +0.5 4,546,028 - AO356_20345 0.59 +0.3 4,546,075 + AO356_20345 0.63 +0.5 4,546,075 + AO356_20345 0.63 +1.0 4,546,075 + AO356_20345 0.63 +1.9 4,546,099 + AO356_20345 0.64 +0.3 4,546,099 + AO356_20345 0.64 +0.9 4,546,100 - AO356_20345 0.64 +1.0 4,546,100 - AO356_20345 0.64 +0.6 4,546,100 - AO356_20345 0.64 +0.2 4,546,262 - AO356_20345 0.76 +2.8 4,546,279 + AO356_20345 0.77 +0.4 4,546,279 + AO356_20345 0.77 +1.2 4,546,279 + AO356_20345 0.77 +0.8 4,546,280 - AO356_20345 0.77 +1.0 4,546,280 - AO356_20345 0.77 +0.0 4,546,280 - AO356_20345 0.77 +0.8 4,546,282 - AO356_20345 0.77 +1.5 4,546,480 - +0.9 4,546,610 + +0.9 4,546,610 + +1.4 4,546,628 - -0.8 4,546,628 - +1.3 4,546,699 + -0.1 4,546,700 - -0.3 4,546,700 - +0.8 4,546,700 - +0.7 4,547,008 + AO356_20350 0.64 -0.5 4,547,008 + AO356_20350 0.64 +1.3 4,547,008 + AO356_20350 0.64 -0.2 4,547,008 + AO356_20350 0.64 -0.8 4,547,009 - AO356_20350 0.64 -0.7 4,547,009 - AO356_20350 0.64 +0.2 4,547,013 + AO356_20350 0.65 -0.4 4,547,177 + +1.3 4,547,178 - +0.0 4,547,178 - -1.4 4,547,258 + +0.6 4,547,280 - -0.4 4,547,294 + -0.5 4,547,294 + +0.2 4,547,295 - +0.3 4,547,295 - +0.3 4,547,295 - -0.1 4,547,304 + +0.7 4,547,385 + AO356_20355 0.22 +0.6 4,547,385 + AO356_20355 0.22 -0.3 4,547,385 + AO356_20355 0.22 -0.2 4,547,385 + AO356_20355 0.22 +0.6 4,547,581 + -0.8 4,547,582 - -0.3
Or see this region's nucleotide sequence