Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19810

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19795 and AO356_19800 are separated by 30 nucleotidesAO356_19800 and AO356_19805 overlap by 4 nucleotidesAO356_19805 and AO356_19810 are separated by 52 nucleotidesAO356_19810 and AO356_19815 are separated by 276 nucleotides AO356_19795: AO356_19795 - glycerol-3-phosphate dehydrogenase, at 4,440,514 to 4,441,539 _19795 AO356_19800: AO356_19800 - lipase, at 4,441,570 to 4,441,917 _19800 AO356_19805: AO356_19805 - phosphohistidine phosphatase, at 4,441,914 to 4,442,366 _19805 AO356_19810: AO356_19810 - esterase, at 4,442,419 to 4,442,862 _19810 AO356_19815: AO356_19815 - alpha/beta hydrolase, at 4,443,139 to 4,443,933 _19815 Position (kb) 4442 4443Strain fitness (log2 ratio) -2 -1 0 1 2at 4441.598 kb on - strandat 4441.636 kb on + strand, within AO356_19800at 4441.636 kb on + strand, within AO356_19800at 4441.636 kb on + strand, within AO356_19800at 4441.637 kb on - strand, within AO356_19800at 4441.637 kb on - strand, within AO356_19800at 4441.711 kb on + strand, within AO356_19800at 4441.711 kb on + strand, within AO356_19800at 4441.711 kb on + strand, within AO356_19800at 4441.712 kb on - strand, within AO356_19800at 4441.712 kb on - strand, within AO356_19800at 4441.712 kb on - strand, within AO356_19800at 4441.913 kb on + strandat 4441.914 kb on - strandat 4441.914 kb on - strandat 4441.927 kb on + strandat 4441.928 kb on - strandat 4442.055 kb on + strand, within AO356_19805at 4442.055 kb on + strand, within AO356_19805at 4442.055 kb on + strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.176 kb on + strand, within AO356_19805at 4442.177 kb on - strand, within AO356_19805at 4442.220 kb on - strand, within AO356_19805at 4442.220 kb on - strand, within AO356_19805at 4442.220 kb on - strand, within AO356_19805at 4442.249 kb on - strand, within AO356_19805at 4442.249 kb on - strand, within AO356_19805at 4442.249 kb on - strand, within AO356_19805at 4442.369 kb on - strandat 4442.632 kb on + strand, within AO356_19810at 4442.633 kb on - strand, within AO356_19810at 4442.659 kb on + strand, within AO356_19810at 4442.659 kb on + strand, within AO356_19810at 4442.660 kb on - strand, within AO356_19810at 4443.013 kb on + strandat 4443.014 kb on - strandat 4443.017 kb on + strandat 4443.017 kb on + strandat 4443.018 kb on - strandat 4443.018 kb on - strandat 4443.018 kb on - strandat 4443.070 kb on + strandat 4443.071 kb on - strandat 4443.406 kb on + strand, within AO356_19815at 4443.407 kb on - strand, within AO356_19815at 4443.619 kb on + strand, within AO356_19815at 4443.619 kb on + strand, within AO356_19815at 4443.620 kb on - strand, within AO356_19815at 4443.620 kb on - strand, within AO356_19815at 4443.690 kb on + strand, within AO356_19815at 4443.691 kb on - strand, within AO356_19815at 4443.691 kb on - strand, within AO356_19815at 4443.813 kb on + strand, within AO356_19815at 4443.813 kb on + strand, within AO356_19815at 4443.814 kb on - strand, within AO356_19815at 4443.814 kb on - strand, within AO356_19815at 4443.814 kb on - strand, within AO356_19815at 4443.814 kb on - strand, within AO356_19815at 4443.852 kb on + strand, within AO356_19815at 4443.852 kb on + strand, within AO356_19815at 4443.852 kb on + strand, within AO356_19815at 4443.852 kb on + strand, within AO356_19815at 4443.852 kb on + strand, within AO356_19815at 4443.853 kb on - strand, within AO356_19815at 4443.853 kb on - strand, within AO356_19815

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,441,598 - -2.7
4,441,636 + AO356_19800 0.19 +0.3
4,441,636 + AO356_19800 0.19 +0.9
4,441,636 + AO356_19800 0.19 +0.0
4,441,637 - AO356_19800 0.19 +1.4
4,441,637 - AO356_19800 0.19 +0.1
4,441,711 + AO356_19800 0.41 -0.8
4,441,711 + AO356_19800 0.41 -0.1
4,441,711 + AO356_19800 0.41 -1.2
4,441,712 - AO356_19800 0.41 +0.1
4,441,712 - AO356_19800 0.41 -0.1
4,441,712 - AO356_19800 0.41 -1.7
4,441,913 + +0.6
4,441,914 - -1.3
4,441,914 - +0.8
4,441,927 + -0.3
4,441,928 - +0.1
4,442,055 + AO356_19805 0.31 +1.0
4,442,055 + AO356_19805 0.31 -0.0
4,442,055 + AO356_19805 0.31 -0.3
4,442,056 - AO356_19805 0.31 -0.1
4,442,056 - AO356_19805 0.31 -0.2
4,442,056 - AO356_19805 0.31 -0.4
4,442,056 - AO356_19805 0.31 -0.2
4,442,067 + AO356_19805 0.34 +0.9
4,442,067 + AO356_19805 0.34 +1.1
4,442,067 + AO356_19805 0.34 +0.3
4,442,067 + AO356_19805 0.34 +0.0
4,442,068 - AO356_19805 0.34 +0.8
4,442,068 - AO356_19805 0.34 +0.6
4,442,068 - AO356_19805 0.34 +0.5
4,442,068 - AO356_19805 0.34 -0.0
4,442,176 + AO356_19805 0.58 +0.4
4,442,177 - AO356_19805 0.58 +0.2
4,442,220 - AO356_19805 0.68 -0.2
4,442,220 - AO356_19805 0.68 +0.1
4,442,220 - AO356_19805 0.68 -1.9
4,442,249 - AO356_19805 0.74 +0.6
4,442,249 - AO356_19805 0.74 +0.7
4,442,249 - AO356_19805 0.74 -0.2
4,442,369 - +1.8
4,442,632 + AO356_19810 0.48 -0.5
4,442,633 - AO356_19810 0.48 -0.2
4,442,659 + AO356_19810 0.54 -0.4
4,442,659 + AO356_19810 0.54 -0.5
4,442,660 - AO356_19810 0.54 -1.1
4,443,013 + +0.4
4,443,014 - +0.5
4,443,017 + +0.5
4,443,017 + -0.2
4,443,018 - -0.9
4,443,018 - -1.2
4,443,018 - -0.7
4,443,070 + -0.5
4,443,071 - +1.0
4,443,406 + AO356_19815 0.34 +0.3
4,443,407 - AO356_19815 0.34 +0.9
4,443,619 + AO356_19815 0.60 +0.1
4,443,619 + AO356_19815 0.60 +0.2
4,443,620 - AO356_19815 0.61 +0.3
4,443,620 - AO356_19815 0.61 -0.8
4,443,690 + AO356_19815 0.69 +1.3
4,443,691 - AO356_19815 0.69 -0.8
4,443,691 - AO356_19815 0.69 +0.4
4,443,813 + AO356_19815 0.85 -0.4
4,443,813 + AO356_19815 0.85 +0.2
4,443,814 - AO356_19815 0.85 +0.6
4,443,814 - AO356_19815 0.85 +0.3
4,443,814 - AO356_19815 0.85 -0.1
4,443,814 - AO356_19815 0.85 -0.3
4,443,852 + AO356_19815 0.90 +0.1
4,443,852 + AO356_19815 0.90 +0.6
4,443,852 + AO356_19815 0.90 +0.1
4,443,852 + AO356_19815 0.90 -0.1
4,443,852 + AO356_19815 0.90 -1.2
4,443,853 - AO356_19815 0.90 -0.3
4,443,853 - AO356_19815 0.90 +0.4

Or see this region's nucleotide sequence